View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117E2 (Length: 700)
Name: NF0117E2
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117E2 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 253 - 697
Target Start/End: Original strand, 8647472 - 8647930
Alignment:
| Q |
253 |
tgtaatctgaatattgttgtaacaatgaaaccctaatt----ggcagaactgcgtgaacaaagaccgtgtct---------gcgattttagcgtctttta |
339 |
Q |
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| T |
8647472 |
tgtaatctgaatattgttgtaacaatgaaaccctaattaattggcagaactgcgtaaacaaagaccgtgtcttattgtcttgcgattttagtgtctttta |
8647571 |
T |
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| Q |
340 |
tttttctattactagttggtgttctaacacattgattcattcacttt-attgtctttcttatatgtgtggaaaaacctataacaatcatttagaattgga |
438 |
Q |
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| T |
8647572 |
tttttctattactagttggtgttctaacacattgattcattcatttttattgtgtttcttatatgtgtggaaaaacctataacaatcatttagaattgga |
8647671 |
T |
|
| Q |
439 |
gggagtagcatgatgttctactagttacttgtaaatggatggaaatgaaatgaattggagtcggcactataatatttttgacatttttcatttatttaat |
538 |
Q |
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| T |
8647672 |
gggagtagcatgatgttctactagttacttgtaaatggatggaaatgaaatgaattggagtcggcactataatgtttttgatatttttcatttatttaat |
8647771 |
T |
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| Q |
539 |
catctttggtacatctaagcaaattgcagttacaagttctttttattgttgataaccaattttacaaatttattttctggtatgacaggagataatatct |
638 |
Q |
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| T |
8647772 |
catctttggtacatctaagcaaattgcagttacaagttttttttattgttgataaccaattttacaaattta-tttctggtatgacaggagataatatct |
8647870 |
T |
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| Q |
639 |
atggctatgattcctcggattcggct-aatcgatgaacgctacatttgctcctgcaattg |
697 |
Q |
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| T |
8647871 |
atggctatgattcctcggattcggctaaatcgatgaacgctgcatttgctcctgcaattg |
8647930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 8647292 - 8647444
Alignment:
| Q |
11 |
gtggcagatatgcactacgcaaatggaaagaatacactgtgtttggatgtacttccttctcagaaggcttcttgtactgacctcaatactactgctttca |
110 |
Q |
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| T |
8647292 |
gtggcagatatgcactatgcaaatggaaagaccacactgtgtttggatgtacttccttctcagaaggcttcttgtactgacctcaatactactgctttca |
8647391 |
T |
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| Q |
111 |
ttcataggatgatccttgctgagaagcctaatcttattgtcttcactggtatt |
163 |
Q |
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| T |
8647392 |
ttcataggatgatccttgctgagaagcctaatcttattgtcttcactggtatt |
8647444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 10 - 163
Target Start/End: Original strand, 8640982 - 8641135
Alignment:
| Q |
10 |
agtggcagatatgcactacgcaaatggaaagaatacactgtgtttggatgtacttccttctcagaaggcttcttgtactgacctcaatactactgctttc |
109 |
Q |
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| T |
8640982 |
agtggcagatatgcactatgcaaatggaaagaatacactttgcttaaatgtccttccttcacaaaatgcttcttgtactgacctcaatactactgctttc |
8641081 |
T |
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| Q |
110 |
attcataggatgatccttgctgagaagcctaatcttattgtcttcactggtatt |
163 |
Q |
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| T |
8641082 |
attcataggatgatccttgctgagaagcctaatcttattgtcttcactggtatt |
8641135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 589 - 697
Target Start/End: Original strand, 8641241 - 8641350
Alignment:
| Q |
589 |
gataaccaattttacaaatttattttctggtatgacaggagataatatctatggctatgattcctcggattcggct-aatcgatgaacgctacatttgct |
687 |
Q |
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| T |
8641241 |
gataaccaattttgcaaatttattttttggtatgacaggagataacatctatggtcatgattcctcggattcggctaaatcgatggacgctgcatttgct |
8641340 |
T |
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| Q |
688 |
cctgcaattg |
697 |
Q |
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| T |
8641341 |
cctgcaattg |
8641350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 1391699 - 1391625
Alignment:
| Q |
10 |
agtggcagatatgcactacgcaaatggaaagaatacactgtgtttggatgtacttccttctcagaaggcttcttg |
84 |
Q |
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| T |
1391699 |
agtggcagatatgcactatgcaaatggaaagactacactttgcttagatgtttttccttcacaaaatgcttcttg |
1391625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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