View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117E20 (Length: 351)
Name: NF0117E20
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117E20 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 7 - 347
Target Start/End: Complemental strand, 13325112 - 13324772
Alignment:
| Q |
7 |
aggtatggcagtcgtaaatcaaaccgtggcaacaatcaaaagcttaaaggcgaaattctgcaattttgacaatatgaagaaaatcggtagagaaaagttc |
106 |
Q |
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| T |
13325112 |
aggtatggcagtcgtaaatcaaaccgtggcaacaatcaaaagcttaaaggcgaaattctgcaattttgacaatatgaagaaaatcggtagagaaaagttc |
13325013 |
T |
|
| Q |
107 |
ccaatgatgaaatagcgtgactcaatctttgtaacacacatagtattaacgcgattgcactaattcaatggaaggaaacaagtctgaaacgactacaata |
206 |
Q |
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| T |
13325012 |
ccaatgatgaaatagcgtgactcaatctttgtaacacacatggtattaacgcgattgcactaattcaatggaaggaaacaagtctgaaacgactacaata |
13324913 |
T |
|
| Q |
207 |
tatgaacgaacagcgttgccaaaataattcggttaagacatcagagttgccaaacgaaacagccttgaaaattaagaatagatgaacgaaagtgatccaa |
306 |
Q |
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| T |
13324912 |
tatgaacgaacagtgttgccaaaataattcggttaagatatcagagttgccaaacgaaacagccttgaaaattaagaatagataaacgaaagtggtccaa |
13324813 |
T |
|
| Q |
307 |
tttaataactagcaatttaaaaaccgattggaattggaatt |
347 |
Q |
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| T |
13324812 |
tttaataactagcaatttaaaaaccgattggaattggaatt |
13324772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 100 - 186
Target Start/End: Complemental strand, 20387657 - 20387571
Alignment:
| Q |
100 |
aaagttcccaatgatgaaat-agcgtgactcaatctttgtaacacacatagtattaacgcgattgcactaattcaatggaaggaaaca |
186 |
Q |
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| T |
20387657 |
aaagttcctaatgatgaatttagtgtgattcaatctttgtaacacg-attgtattaacgcgattgcactaattcaatggaaagaaaca |
20387571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 25977387 - 25977435
Alignment:
| Q |
128 |
tcaatctttgtaacacacatagtattaacgcgattgcactaattcaatgg |
177 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
25977387 |
tcaatctttgtaacacaaata-tattaacgcgattgcactaattcaatgg |
25977435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 326
Target Start/End: Complemental strand, 12100396 - 12100353
Alignment:
| Q |
283 |
aatagatgaacgaaagtgatccaatttaataactagcaatttaa |
326 |
Q |
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|||||||| | ||| ||||||||||||||||||||||||||||| |
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| T |
12100396 |
aatagatggaggaacgtgatccaatttaataactagcaatttaa |
12100353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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