View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117E22 (Length: 331)
Name: NF0117E22
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117E22 |
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| [»] scaffold0057 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 10 - 327
Target Start/End: Original strand, 42471456 - 42471773
Alignment:
| Q |
10 |
gtcttcatctgactgcggagcatagtctatgagagcacaaaggttttcataaaatatgaatgcctcggtgttatccgtgtcaaaggcacaatcaactcca |
109 |
Q |
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| T |
42471456 |
gtcttcatctgactgcggagcatagtctatgagagcacaaaggttttcataaaatatgaatgcctaggtgttatccgtgtcaaaggcacaatcaattcca |
42471555 |
T |
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| Q |
110 |
tagcttccaaatacggtatgagcaagtgaacagaacccatcacgaacaaattcaggcccgttcaaaacctcatcgttgggggttcccggagcataatcca |
209 |
Q |
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| T |
42471556 |
tagcttccaaatacggtatgagcaagtgaacggaacccatcacgaacaaattcaggtccgttcaaaacctcatcgttgggggttcccggagcataatcca |
42471655 |
T |
|
| Q |
210 |
atagtacgtatttatcattcatgaaaaagtaagcttcgttgttcctagatgaaggaaatgcagcattaatgtaaccaggttttgtcattttactagacga |
309 |
Q |
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| T |
42471656 |
atagtacgtatttatcattcatgaaaaagtaagcttcgttgttcctagatgaacgaaatgcagcattaatgtaaccaggttttgtcattttactggacga |
42471755 |
T |
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| Q |
310 |
ggaggaattatttgaatt |
327 |
Q |
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| T |
42471756 |
ggaggaattatttgaatt |
42471773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 29 - 297
Target Start/End: Complemental strand, 3352306 - 3352038
Alignment:
| Q |
29 |
gcatagtctatgagagcacaaaggttttcataaaatatgaatgcctcggtgttatccgtgtcaaaggcacaatcaactccatagcttccaaatacggtat |
128 |
Q |
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| T |
3352306 |
gcatagtctatgagagcacaaaagttttcataaaagatgaatgcttcgttgttatcggtgttaaaggaacaatctattccatagcttccaaatatggtat |
3352207 |
T |
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| Q |
129 |
gagcaagtgaacagaacccatcacgaacaa-attcaggcccgttcaaaacctcatcgttgggggttcccggagcataatccaatagtacgtatttatcat |
227 |
Q |
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| T |
3352206 |
gagcaagtgatctaaacccatcgcgaacaagactc-ggcccatacaaaatcttatcgttgccagttcccggtgcatagtccaataggatatacttatcat |
3352108 |
T |
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| Q |
228 |
tcatgaaaaagtaagcttcgttgttcctagatgaaggaaatgcagcattaatgtaaccaggttttgtcat |
297 |
Q |
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| T |
3352107 |
tcatgaaaaagtaagcttcattgttcctagatgaacgaaatgcagcatctatgtaaccagattttgtcat |
3352038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 297
Target Start/End: Original strand, 42046285 - 42046559
Alignment:
| Q |
26 |
ggagcatagtctatgagagcacaaaggttttcataaaatatgaatgcctcggtgttatccgtgtcaaaggcacaatcaactccatagcttccaaatacgg |
125 |
Q |
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| T |
42046285 |
ggagcatagtctattagagcacaaaaattttcatgaaagatgaatgcctggttgttatcggtgtcaaatgcacaatcaattgcatagctttgaaatattg |
42046384 |
T |
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| Q |
126 |
tatgagcaagtgaacagaacccatcacgaacaaattcaggcccgttcaaaacctcatcgttgggggttcccggagcataatccaatagtacgtattt--- |
222 |
Q |
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| T |
42046385 |
taggagcaagtgatttaaacccatcactaacaagagatggcccatgcaaaatcttatcgttggtggttccaggagcataatccaatagcacgtacttatc |
42046484 |
T |
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| Q |
223 |
atcattcatgaaaaagtaagcttcgttgttcctagatgaaggaaatgcagcattaatgtaaccaggttttgtcat |
297 |
Q |
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| T |
42046485 |
atcattgatgaaaatgtaagcttcattgtgcctagatgaacgaaaagcagcccttatgtaaccagattttgtcat |
42046559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 29 - 138
Target Start/End: Complemental strand, 14452587 - 14452478
Alignment:
| Q |
29 |
gcatagtctatgagagcacaaaggttttcataaaatatgaatgcctcggtgttatccgtgtcaaaggcacaatcaactccatagcttccaaatacggtat |
128 |
Q |
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| T |
14452587 |
gcatagtctatgagagcacaaaaattttcataaaagatgaatgcctcgttgttatcggtgtcaaaggcacaatcaattccatagcttccaaatattgtat |
14452488 |
T |
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| Q |
129 |
gagcaagtga |
138 |
Q |
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| T |
14452487 |
gagcatgtga |
14452478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 297
Target Start/End: Complemental strand, 14452394 - 14452313
Alignment:
| Q |
216 |
cgtatttatcattcatgaaaaagtaagcttcgttgttcctagatgaaggaaatgcagcattaatgtaaccaggttttgtcat |
297 |
Q |
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| T |
14452394 |
cgtacttatcattgatgaaaaagtaagcttcattggacttagatgaacgaattacagcatttacataaccagattttgtcat |
14452313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 297
Target Start/End: Original strand, 63535 - 63746
Alignment:
| Q |
86 |
gtgtcaaaggcacaatcaactccatagcttccaaatacggtatgagcaagtgaacagaacccatcacgaacaaattcaggcccgttcaaaacctcatcgt |
185 |
Q |
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| T |
63535 |
gtgtcaaaggcacaatctattccattgcttccaaatttggtattatcaagcgatggaaacccatggcgaacaaaaataggtccatataaaatcttatcgt |
63634 |
T |
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| Q |
186 |
tgggggttcccggagcataatccaatagtacgtatttatcattcatgaaaaagtaagcttcgttgttcctagatgaaggaaatgcagcattaatgtaacc |
285 |
Q |
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| T |
63635 |
tgctggttccgggagcataatccaatagcaagagcttatcattgatgaaaaagtatgcttcattttttctagatgaacgaaatactgcatttatgtaacc |
63734 |
T |
|
| Q |
286 |
aggttttgtcat |
297 |
Q |
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|| ||||||||| |
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| T |
63735 |
agattttgtcat |
63746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 58 - 297
Target Start/End: Original strand, 37451 - 37690
Alignment:
| Q |
58 |
ataaaatatgaatgcctcggtgttatccgtgtcaaaggcacaatcaactccatagcttccaaatacggtatgagcaagtgaacagaacccatcacgaaca |
157 |
Q |
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| T |
37451 |
ataaaagacgaacgcctcgttgtcatcggtgtcaaaggcacaatctattccattgcttccaaattttgtattatcaagcgatggaaacccgtggcgaaca |
37550 |
T |
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| Q |
158 |
aattcaggcccgttcaaaacctcatcgttgggggttcccggagcataatccaatagtacgtatttatcattcatgaaaaagtaagcttcgttgttcctag |
257 |
Q |
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| T |
37551 |
aaaacaggtccatgtaaaatcttatcgttgctggttccgggagcataatccaaaaccaagagcttatcattgatgaaaaagtatgcttcatttttcctag |
37650 |
T |
|
| Q |
258 |
atgaaggaaatgcagcattaatgtaaccaggttttgtcat |
297 |
Q |
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||||| ||||| ||||||| |||||||||| ||| ||||| |
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| T |
37651 |
atgaacgaaatacagcatttatgtaaccagatttcgtcat |
37690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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