View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0117E24 (Length: 531)

Name: NF0117E24
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0117E24
NF0117E24
[»] chr5 (8 HSPs)
chr5 (321-528)||(38602292-38602499)
chr5 (6-159)||(38603879-38604043)
chr5 (168-288)||(38602532-38602644)
chr5 (42-104)||(4796366-4796429)
chr5 (42-92)||(30587832-30587882)
chr5 (42-104)||(904786-904849)
chr5 (42-104)||(16275249-16275312)
chr5 (42-103)||(31973468-31973530)
[»] chr8 (4 HSPs)
chr8 (42-104)||(30590456-30590519)
chr8 (45-94)||(30602908-30602957)
chr8 (42-94)||(34529995-34530047)
chr8 (49-104)||(39590712-39590768)
[»] chr7 (12 HSPs)
chr7 (42-104)||(16015442-16015505)
chr7 (42-104)||(32000825-32000888)
chr7 (45-104)||(14595914-14595974)
chr7 (42-94)||(30899034-30899086)
chr7 (46-94)||(25589115-25589163)
chr7 (42-90)||(41389314-41389362)
chr7 (42-90)||(46870322-46870370)
chr7 (46-89)||(12840621-12840664)
chr7 (41-87)||(28359091-28359137)
chr7 (54-102)||(10406621-10406670)
chr7 (44-104)||(16015753-16015814)
chr7 (42-104)||(21033863-21033927)
[»] chr1 (6 HSPs)
chr1 (59-104)||(34626807-34626853)
chr1 (42-104)||(12581376-12581439)
chr1 (45-91)||(13653379-13653425)
chr1 (42-87)||(7907895-7907940)
chr1 (42-94)||(19810742-19810794)
chr1 (42-94)||(19810002-19810054)
[»] chr4 (3 HSPs)
chr4 (42-94)||(23311514-23311566)
chr4 (42-93)||(48046365-48046416)
chr4 (42-84)||(19190790-19190832)
[»] chr3 (3 HSPs)
chr3 (42-94)||(351191-351243)
chr3 (42-93)||(51917888-51917939)
chr3 (46-94)||(45016877-45016925)
[»] chr2 (3 HSPs)
chr2 (42-89)||(36901150-36901197)
chr2 (42-87)||(21374000-21374045)
chr2 (59-94)||(18183491-18183526)
[»] scaffold0006 (1 HSPs)
scaffold0006 (45-91)||(143140-143186)
[»] chr6 (1 HSPs)
chr6 (42-104)||(1206212-1206275)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 321 - 528
Target Start/End: Complemental strand, 38602499 - 38602292
Alignment:
Q  321 gtacatagttaaccttggttcctaatttccaacatgatgtttcataatgcagatattgcagtgattggaagttgaagttcaattattgaagannnnnnnc 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||       |    
T  38602499 gtacatagttaaccttggttcctaatttccaacatgatgtttcataatgcagatattgcagtgattggaagttgaagttcaattgttgaagatttttttc 38602400  T
Q  421 tttgattttctcaggtaaacccttccccccaattcatatagtagggaaaatagttatgtgtagtgtttggttttaggttttcatgcc-tttttgtttaac 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||| ||||||    
T  38602399 tttgattttctcaggtaaacccttccccccaattcatatagtagggaaaatagttctgtgtagtgttt-gttttaggttttcatgccttttttttttaac 38602301  T
Q  520 ccctaattg 528  Q
    ||| |||||    
T  38602300 ccccaattg 38602292  T

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Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 6 - 159
Target Start/End: Complemental strand, 38604043 - 38603879
Alignment:
Q  6 cagaagcaggttgttacactgtggtagtgacaaaacagtcccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggcaccctcacc--- 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  38604043 cagaagcaggttgttacactgtggtagtgacaaaacagtcccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggcaccctcacctta 38603944  T
Q  103 --------ttttgtaagtatgagttaaacccaatttaaaatttgatagaatctatattattatta 159  Q
            |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  38603943 caaaccggttttgtaagtatgagttagacccaatttaaaatttgatagaatgtatattattatta 38603879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 168 - 288
Target Start/End: Complemental strand, 38602644 - 38602532
Alignment:
Q  168 ctttcaattttagaacataaataaaacagaaagaaagctttcagagacactataaaacacacccaccccttcattttcttctatctctaaaaacgcaagc 267  Q
    |||||||||||||||||||||||||| |||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38602644 ctttcaattttagaacataaataaaataga--------tttcagagacactataaaacacacccaccccttcattttcttctatctctaaaaacgcaagc 38602553  T
Q  268 aacaccattctttcatgtaag 288  Q
    |||||||||||||||||||||    
T  38602552 aacaccattctttcatgtaag 38602532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 4796366 - 4796429
Alignment:
Q  42 agtcccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggca-ccctcacctt 104  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||    
T  4796366 agtcacacattgcttagagatatggcatgtgtagtgtttataaagcatgggcagccctcacctt 4796429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 30587882 - 30587832
Alignment:
Q  42 agtcccacattgcttaaagatatggcatgtgtagtgtttataaagcttggg 92  Q
    |||||||||||||| | |||||||||||||||||||| |||||||| ||||    
T  30587882 agtcccacattgctcagagatatggcatgtgtagtgtgtataaagcatggg 30587832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 904849 - 904786
Alignment:
Q  42 agtcccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggca-ccctcacctt 104  Q
    |||||||||||||| | | ||||||| ||||||||||||||||| |||| ||| ||||||||||    
T  904849 agtcccacattgctaacatatatggcttgtgtagtgtttataaaacttgagcatccctcacctt 904786  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 16275249 - 16275312
Alignment:
Q  42 agtcccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggca-ccctcacctt 104  Q
    ||||||||||||| || ||||||||| |||||||||| | ||||| ||||||| ||||||||||    
T  16275249 agtcccacattgcctagagatatggcctgtgtagtgtgtgtaaagtttgggcagccctcacctt 16275312  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 31973530 - 31973468
Alignment:
Q  42 agtcccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggca-ccctcacct 103  Q
    ||||||||||||  || ||||||||| | |||||||||||||||| ||||||| |||||||||    
T  31973530 agtcccacattgtctagagatatggcctatgtagtgtttataaagtttgggcagccctcacct 31973468  T

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Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 30590456 - 30590519
Alignment:
Q  42 agtcccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggca-ccctcacctt 104  Q
    ||||||||||||| || | |||||||||||||||||||||||||||||||||| ||||||||||    
T  30590456 agtcccacattgcatagatatatggcatgtgtagtgtttataaagcttgggcagccctcacctt 30590519  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 30602908 - 30602957
Alignment:
Q  45 cccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggca 94  Q
    ||||||||||||| |||| |||||||||||||||||||||| | ||||||    
T  30602908 cccacattgcttagagatgtggcatgtgtagtgtttataaaacatgggca 30602957  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 34529995 - 34530047
Alignment:
Q  42 agtcccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggca 94  Q
    |||||||||||| ||| || |||||  ||||||||||||||||||||||||||    
T  34529995 agtcccacattgattagaggtatggtctgtgtagtgtttataaagcttgggca 34530047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 39590712 - 39590768
Alignment:
Q  49 cattgcttaaagatatggcatgtgtagtgtttataaagcttgggca-ccctcacctt 104  Q
    ||||||||| ||||||||| ||| ||||||||||||||| |||||| ||||||||||    
T  39590712 cattgcttagagatatggcctgtctagtgtttataaagcatgggcagccctcacctt 39590768  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 16015505 - 16015442
Alignment:
Q  42 agtcccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggca-ccctcacctt 104  Q
    |||||||| |||| || |||||||||||||||||||||||||||| ||||||| ||||||||||    
T  16015505 agtcccacgttgcctagagatatggcatgtgtagtgtttataaagtttgggcagccctcacctt 16015442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 32000825 - 32000888
Alignment:
Q  42 agtcccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggca-ccctcacctt 104  Q
    ||||||||| |||||| ||||||| | |||||||||||||||||||||||||| ||||||||||    
T  32000825 agtcccacaatgcttagagatatgtcctgtgtagtgtttataaagcttgggcagccctcacctt 32000888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 14595974 - 14595914
Alignment:
Q  45 cccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggca-ccctcacctt 104  Q
    ||||| |||| || |||||||||||||||||||||||||||| ||||||| ||||||||||    
T  14595974 cccacgttgcctagagatatggcatgtgtagtgtttataaagtttgggcagccctcacctt 14595914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 30899086 - 30899034
Alignment:
Q  42 agtcccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggca 94  Q
    |||||||||||||||| ||||| | |||||||||||| |||||||||||||||    
T  30899086 agtcccacattgcttagagataggtcatgtgtagtgtatataaagcttgggca 30899034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 25589163 - 25589115
Alignment:
Q  46 ccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggca 94  Q
    |||||||||||  | ||||||||||||||||||||||||| ||||||||    
T  25589163 ccacattgcttggatatatggcatgtgtagtgtttataaaacttgggca 25589115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 41389314 - 41389362
Alignment:
Q  42 agtcccacattgcttaaagatatggcatgtgtagtgtttataaagcttg 90  Q
    |||||||||||||||| |||||| || |||||||| |||||||||||||    
T  41389314 agtcccacattgcttagagatatagcctgtgtagtatttataaagcttg 41389362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 46870322 - 46870370
Alignment:
Q  42 agtcccacattgcttaaagatatggcatgtgtagtgtttataaagcttg 90  Q
    ||||||||||||| ||  ||||||||||||||||| |||||||||||||    
T  46870322 agtcccacattgcctagggatatggcatgtgtagtatttataaagcttg 46870370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 12840664 - 12840621
Alignment:
Q  46 ccacattgcttaaagatatggcatgtgtagtgtttataaagctt 89  Q
    ||||||||| || ||||||||| |||||||||||||||||||||    
T  12840664 ccacattgcctagagatatggcttgtgtagtgtttataaagctt 12840621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 28359091 - 28359137
Alignment:
Q  41 cagtcccacattgcttaaagatatggcatgtgtagtgtttataaagc 87  Q
    |||||||||||||| || |||||| || |||||||||||||||||||    
T  28359091 cagtcccacattgcctagagatatagcctgtgtagtgtttataaagc 28359137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 10406670 - 10406621
Alignment:
Q  54 cttaaagatatggcatgtgtagtgtttataaagcttgggca-ccctcacc 102  Q
    |||| ||||||||| ||||||||||||||||||| |||||| ||||||||    
T  10406670 cttagagatatggcctgtgtagtgtttataaagcatgggcagccctcacc 10406621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 16015814 - 16015753
Alignment:
Q  44 tcccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggca-ccctcacctt 104  Q
    ||||||||||| || ||||||||| |  |||||||||| |||||||||||| ||||||||||    
T  16015814 tcccacattgcctagagatatggctttcgtagtgtttagaaagcttgggcagccctcacctt 16015753  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 21033927 - 21033863
Alignment:
Q  42 agtcccacattgcttaaagatatggcatgtgtagtgtttat-aaagcttgggca-ccctcacctt 104  Q
    |||| |||||||| || ||||||||||| ||| |||||||| |||||||||||| ||||||||||    
T  21033927 agtctcacattgcctagagatatggcatttgtggtgtttataaaagcttgggcagccctcacctt 21033863  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 34626853 - 34626807
Alignment:
Q  59 agatatggcatgtgtagtgtttataaagcttgggca-ccctcacctt 104  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  34626853 agatatggcatgtgtagtgtttataaagcttgggcagccctcacctt 34626807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 12581439 - 12581376
Alignment:
Q  42 agtcccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggca-ccctcacctt 104  Q
    |||||||| ||||  ||||||||||||||| ||||||||||||||| |||||| ||||||||||    
T  12581439 agtcccacgttgcccaaagatatggcatgtttagtgtttataaagcatgggcagccctcacctt 12581376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 13653379 - 13653425
Alignment:
Q  45 cccacattgcttaaagatatggcatgtgtagtgtttataaagcttgg 91  Q
    ||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  13653379 cccactttgcttagagatatggcatgtgtagtgtttataaagtttgg 13653425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 7907940 - 7907895
Alignment:
Q  42 agtcccacattgcttaaagatatggcatgtgtagtgtttataaagc 87  Q
    ||||||||||| || | |||||||||||||||||||||||||||||    
T  7907940 agtcccacatttctcagagatatggcatgtgtagtgtttataaagc 7907895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 19810794 - 19810742
Alignment:
Q  42 agtcccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggca 94  Q
    ||||||||||||| || ||||||||| |||| | |||||||||||||||||||    
T  19810794 agtcccacattgcctagagatatggcctgtgcaatgtttataaagcttgggca 19810742  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 19810054 - 19810002
Alignment:
Q  42 agtcccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggca 94  Q
    ||||||||||||| || | ||||||  |||||| |||||||||||||||||||    
T  19810054 agtcccacattgcctagatatatggtctgtgtaatgtttataaagcttgggca 19810002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 23311566 - 23311514
Alignment:
Q  42 agtcccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggca 94  Q
    ||||| |||||| ||| ||||||||||||||||||||||||||||| ||||||    
T  23311566 agtcctacattgtttagagatatggcatgtgtagtgtttataaagcgtgggca 23311514  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 48046365 - 48046416
Alignment:
Q  42 agtcccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggc 93  Q
    ||||||||||||| || ||||||||||||||||||||||| |||| ||||||    
T  48046365 agtcccacattgcctagagatatggcatgtgtagtgtttacaaagtttgggc 48046416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 19190832 - 19190790
Alignment:
Q  42 agtcccacattgcttaaagatatggcatgtgtagtgtttataa 84  Q
    ||||||||||| |||| ||||||||| ||||||||||||||||    
T  19190832 agtcccacattacttatagatatggcctgtgtagtgtttataa 19190790  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 351191 - 351243
Alignment:
Q  42 agtcccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggca 94  Q
    |||||||||||||||| |||| || ||||||||||||||||||||| ||||||    
T  351191 agtcccacattgcttacagatgtgacatgtgtagtgtttataaagcatgggca 351243  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 51917888 - 51917939
Alignment:
Q  42 agtcccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggc 93  Q
    ||||| ||||||| || ||||||||||| |||||||||||||||||||||||    
T  51917888 agtcctacattgcctagagatatggcatatgtagtgtttataaagcttgggc 51917939  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 45016925 - 45016877
Alignment:
Q  46 ccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggca 94  Q
    |||||||||||  ||||||| | ||||||||||||||||||||||||||    
T  45016925 ccacattgcttttagatatgacttgtgtagtgtttataaagcttgggca 45016877  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 36901150 - 36901197
Alignment:
Q  42 agtcccacattgcttaaagatatggcatgtgtagtgtttataaagctt 89  Q
    |||||| ||||||||| ||||||| |||||||||||||||||||||||    
T  36901150 agtcccccattgcttagagatatgacatgtgtagtgtttataaagctt 36901197  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 21374000 - 21374045
Alignment:
Q  42 agtcccacattgcttaaagatatggcatgtgtagtgtttataaagc 87  Q
    ||||||||||||| || ||||||||| |||||||||||||||||||    
T  21374000 agtcccacattgcctagagatatggcctgtgtagtgtttataaagc 21374045  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 94
Target Start/End: Original strand, 18183491 - 18183526
Alignment:
Q  59 agatatggcatgtgtagtgtttataaagcttgggca 94  Q
    ||||||||| ||||||||||||||||||||||||||    
T  18183491 agatatggcttgtgtagtgtttataaagcttgggca 18183526  T

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Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 143140 - 143186
Alignment:
Q  45 cccacattgcttaaagatatggcatgtgtagtgtttataaagcttgg 91  Q
    ||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  143140 cccactttgcttagagatatggcatgtgtagtgtttataaagtttgg 143186  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 1206275 - 1206212
Alignment:
Q  42 agtcccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggca-ccctcacctt 104  Q
    ||||||||||| | || ||||||| | ||||||||||||||||||||| |||| ||||||||||    
T  1206275 agtcccacatttcctagagatatgtcctgtgtagtgtttataaagcttaggcagccctcacctt 1206212  T

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