View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117E29 (Length: 580)
Name: NF0117E29
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117E29 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 9 - 390
Target Start/End: Complemental strand, 25065139 - 25064758
Alignment:
| Q |
9 |
aacctactcgattgcatgattcttggatcctcctcgtgaacacacctccaagaacacattcttatgtcnnnnnnnttgctacaccattagtttacacatc |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25065139 |
aacctactcgattgcatgattcttggatcctcctcgtgaacacacctccaagaacacattcttatgtcaaaaaaattgctacaccattagtttacacatc |
25065040 |
T |
|
| Q |
109 |
tgataccttttcagtgccttgagtatgttaatgattaatccatttatcttccttgaactgatgcagtgcttctcttcaaaacaatacaccatctgatcat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25065039 |
tgataccttttcagtgccttgagtatgttaatgattaatccatttatcttccttgaactgatgcagtgcttctcttcaaaacaatacaccatctgatcat |
25064940 |
T |
|
| Q |
209 |
aacattgagaagatagagaaaattatttcaactcataagttatgggatgcagattatctacctttcaattctctctctttggtaactttctctctatgta |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25064939 |
aacattgagaagatagagaaaattatttcaactcataagttatgggatgcagattatctacctttcaattctctctctttggtaactttctctctatcta |
25064840 |
T |
|
| Q |
309 |
ttttgaacaatcattctctcccatctaattaatttattttaatcatcgaactctctactaaatacacgaaaatcatcaaaat |
390 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
25064839 |
ttttgaacaatcattctctcccatctaattaatttattttaatcatcgaactccctactaaatacacaaaaatcatcaaaat |
25064758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 186 - 577
Target Start/End: Complemental strand, 25086398 - 25086004
Alignment:
| Q |
186 |
aaaacaatacaccatctgatcataacattgagaagatagagaaaattatttcaactcataagttatgggatgcagattatctacctttcaattctctctc |
285 |
Q |
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|
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||| | ||||| |
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| T |
25086398 |
aaaacaagtcaccatctgatcataacattgagaagatagagaaaactatttcaactcagaagttatgggatgcatattatctacctttcaatcccctctc |
25086299 |
T |
|
| Q |
286 |
tttggtaactttctctctatgtattttgaacaatcattctctcccatctaattaatttattttaatcatcgaactctctactaaatacacgaaaatcatc |
385 |
Q |
| |
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| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25086298 |
tctggtaactttttctctatctattttgaacaatcattctctcccatctaattaatttattttcatcatcgaactctctactaaatacacgaaaatcatc |
25086199 |
T |
|
| Q |
386 |
aaaatnnnnnnnnn---gtaaagatagagaatccatttcctttatactagagtgtttatttgtgctgttggttcatccattgttcaatacaatcatatta |
482 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25086198 |
aaaataaaaataaaaaagtaaagatagagaatccatttcctttatactagagtgttgatttgtgctgttggttcatccattgttcaatacaatgatatta |
25086099 |
T |
|
| Q |
483 |
tggtgaaggttggggagcaataaagaaggttcttccattgcagagttggggagcaacaacgaggcctaaatttgtgttgtttggttcaccaattg |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
25086098 |
tggtgaaggttggggagcaataaagaaggttcttccattgcagagttggggagcaacaacgaggcctaaatttgtgttgtttggttcatcaattg |
25086004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 452 - 577
Target Start/End: Complemental strand, 25064696 - 25064571
Alignment:
| Q |
452 |
ggttcatccattgttcaatacaatcatattatggtgaaggttggggagcaataaagaaggttcttccattgcagagttggggagcaacaacgaggcctaa |
551 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
25064696 |
ggttcttccatcgttcaatacaatcatattatggtgaaggttggggagcaataaagaaggttcttccattgcacagttggggagcaacaatgaggcctaa |
25064597 |
T |
|
| Q |
552 |
atttgtgttgtttggttcaccaattg |
577 |
Q |
| |
|
||||||||||||||||||| |||||| |
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|
| T |
25064596 |
atttgtgttgtttggttcatcaattg |
25064571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 25440610 - 25440521
Alignment:
| Q |
142 |
attaatccatttatcttccttgaactgatgcagtgcttctcttc--aaaacaataca-ccatctgatcataacattgagaagatagagaa |
228 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| || | ||||||||||| |||||| ||||||| |
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|
| T |
25440610 |
attaatccatttgtcttccttcaactgatgcagtgcttctcttcaaaaaacaatacacccttttgatcataacagtgagaaactagagaa |
25440521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 450 - 500
Target Start/End: Complemental strand, 25060871 - 25060823
Alignment:
| Q |
450 |
ttggttcatccattgttcaatacaatcatattatggtgaaggttggggagc |
500 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
25060871 |
ttggttcttccattgttcaatacaatc--attatggtgaaggttggggagc |
25060823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 569
Target Start/End: Complemental strand, 25074398 - 25074365
Alignment:
| Q |
536 |
caacaacgaggcctaaatttgtgttgtttggttc |
569 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
25074398 |
caacaatgaggcctaaatttgtgttgtttggttc |
25074365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 354
Target Start/End: Complemental strand, 20896254 - 20896216
Alignment:
| Q |
316 |
caatcattctctcccatctaattaatttattttaatcat |
354 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||| |
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|
| T |
20896254 |
caatcattctctctcatctaaataatttattttaatcat |
20896216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 354
Target Start/End: Complemental strand, 30643659 - 30643621
Alignment:
| Q |
316 |
caatcattctctcccatctaattaatttattttaatcat |
354 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
30643659 |
caatcattctctctcatctaaataatttattttaatcat |
30643621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 354
Target Start/End: Complemental strand, 19431457 - 19431419
Alignment:
| Q |
316 |
caatcattctctcccatctaattaatttattttaatcat |
354 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
19431457 |
caatcattctctctcatctaaataatttattttaatcat |
19431419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 355
Target Start/End: Complemental strand, 19456374 - 19456338
Alignment:
| Q |
319 |
tcattctctcccatctaattaatttattttaatcatc |
355 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||| |
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|
| T |
19456374 |
tcattctctctcatctaaataatttattttaatcatc |
19456338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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