View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0117E30 (Length: 583)
Name: NF0117E30
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117E30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 525; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 8 - 579
Target Start/End: Complemental strand, 8749912 - 8749340
Alignment:
| Q |
8 |
gccgacgtgattctgtcttctcttcgtcgtcaaactcctctcacgtctacatatctctccttgtttcaactgagatccagcgtgttggtggttcagatcc |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8749912 |
gccggcgtgattctgtcttctcttcgtcgtcaaactcctctcacgtctacatatctctccttgtttcaactgagatccagcgtgttggtggttcagatcc |
8749813 |
T |
|
| Q |
108 |
ggcatgccagaggagaggaggcggtttaagatgaacgatacggaatgggatgtgt-ttgaagaccttgacatgtcgaggaaatgaagaatggaggtggtg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8749812 |
ggcatgccagaggagaggaggcggtttaagatgaacgatacggaatgggatgtgtgttgaagaccttgacatgttgaggaaatgaagaatggaggtggtg |
8749713 |
T |
|
| Q |
207 |
gtggttcagatccggccatggcgccaccggattcagagaaatgttggttgtttattttcaatacatatgcaaattgcaagcgaccaatttccagatactt |
306 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
8749712 |
gtggttcaaatccggccatggcgtcaccggattcagagaaatgttggctgtttattttcaatacatgtgcaaattgcaagcgagcaatttccagatactt |
8749613 |
T |
|
| Q |
307 |
tctctaacatcgctcttggttgaacaatctccctaacctaattcaaatttatttcctccacaacaaaacaaagcattgaatgacttaatttcagtttaag |
406 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8749612 |
tctctaacatctctcttggttgaacaatctccctaacctaattcaaatttatttcctccacaccaaaacaaagcattgaatgatttaatttcagtttaag |
8749513 |
T |
|
| Q |
407 |
aaaagttttgatggaaaggggcaataaaaaatatacatgatttcatcttgtccatctttattctttatcaatggcagagaagagaaaactaacttgacat |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8749512 |
aaaagttttgatggaaaggggcaataaaaaatatacatgatttcatcttgtccatctttattctttatcaatggcagagaagagaaaactaacttgacat |
8749413 |
T |
|
| Q |
507 |
aaattacaaacataaaatttaaccatgttgaattaaattacaaaattgattttccctttaacccagttgaatt |
579 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8749412 |
aaattacaaacataaaatttaaccatgttgaattaaattacaaaattgattttccctttaacccagttgaatt |
8749340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 8 - 579
Target Start/End: Original strand, 38112740 - 38113312
Alignment:
| Q |
8 |
gccgacgtgattctgtcttctcttcgtcgtcaaactcctctcacgtctacatatctctccttgtttcaactgagatccagcgtgttggtggttcagatcc |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38112740 |
gccggcgtgattctgtcttctcttcgtcgtcaaactcctctcacgtctacatatctctccttgtttcaactgagatccagcgtgttggtggttcagatcc |
38112839 |
T |
|
| Q |
108 |
ggcatgccagaggagaggaggcggtttaagatgaacgatacggaatgggatgtgt-ttgaagaccttgacatgtcgaggaaatgaagaatggaggtggtg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38112840 |
ggcatgccagaggagaggaggcggtttaagatgaacgatacggaatgggatgtgtgttgaagaccttgacatgttgaggaaatgaagaatggaggtggtg |
38112939 |
T |
|
| Q |
207 |
gtggttcagatccggccatggcgccaccggattcagagaaatgttggttgtttattttcaatacatatgcaaattgcaagcgaccaatttccagatactt |
306 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
38112940 |
gtggttcaaatccggccatggcgtcaccggattcagagaaatgttggctgtttattttcaatacatgtgcaaattgcaagcgagcaatttccagatactt |
38113039 |
T |
|
| Q |
307 |
tctctaacatcgctcttggttgaacaatctccctaacctaattcaaatttatttcctccacaacaaaacaaagcattgaatgacttaatttcagtttaag |
406 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38113040 |
tctctaacatctctcttggttgaacaatctccctaacctaattcaaatttatttcctccacaccaaaacaaagcattgaatgatttaatttcagtttaag |
38113139 |
T |
|
| Q |
407 |
aaaagttttgatggaaaggggcaataaaaaatatacatgatttcatcttgtccatctttattctttatcaatggcagagaagagaaaactaacttgacat |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38113140 |
aaaagttttgatggaaaggggcaataaaaaatatacatgatttcatcttgtccatctttattctttatcaatggtagagaagagaaaactaacttgacat |
38113239 |
T |
|
| Q |
507 |
aaattacaaacataaaatttaaccatgttgaattaaattacaaaattgattttccctttaacccagttgaatt |
579 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38113240 |
aaattacaaacataaaatttaaccatgttgaattaaattacaaaattgattttccctttaacccagttgaatt |
38113312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 8 - 579
Target Start/End: Original strand, 24963309 - 24963882
Alignment:
| Q |
8 |
gccgacgtgattctgtcttctcttcgtcgtcaaactcctctcacgtctacatatctctccttgtttcaactgagatccagcgtgttggtggttcagatcc |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24963309 |
gccggcgtgattctgtcttctcttcgtcgtcaaactcctctcacgtctacatatctctccttgtttcaactgagatccagcgtgttggtggttcagatcc |
24963408 |
T |
|
| Q |
108 |
ggcatgccagaggagaggaggcggtttaagatgaacgatac-ggaatgggatgtgt-ttgaagaccttgacatgtcgaggaaatgaagaatggaggtggt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24963409 |
ggcatgccagaggagaggaggcggtttaagatgaacgataaaggaatgggatgtgtgttgaagaccttgacatgttgaggaaatgaagaatggaggtggt |
24963508 |
T |
|
| Q |
206 |
ggtggttcagatccggccatggcgccaccggattcagagaaatgttggttgtttattttcaatacatatgcaaattgcaagcgaccaatttccagatact |
305 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
24963509 |
ggtggttcaaatccggccatggcgtcaccggattcagagaaatgttggctgtttattttcaatacatgtgcaaattgcaagcgagcaatttccagatact |
24963608 |
T |
|
| Q |
306 |
ttctctaacatcgctcttggttgaacaatctccctaacctaattcaaatttatttcctccacaacaaaacaaagcattgaatgacttaatttcagtttaa |
405 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24963609 |
ttctctaacatctctcttggttgaacaatctccctaacctaattcaaatttatttcctccacaccaaaacaaagcattgaatgatttaatttcagtttaa |
24963708 |
T |
|
| Q |
406 |
gaaaagttttgatggaaaggggcaataaaaaatatacatgatttcatcttgtccatctttattctttatcaatggcagagaagagaaaactaacttgaca |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24963709 |
gaaaagttttgatggaaaggggcaataaaaaatatacatgatttcatcttgtccatctttattctttatcaatggtagagaagagaaaactaacttgaca |
24963808 |
T |
|
| Q |
506 |
taaattacaaacataaaatttaaccatgttgaattaaattacaaaattgattttccctttaacccagttgaatt |
579 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24963809 |
taaattacaaacataaaatttaaccatgttgaattaaattacaaaattgattttccctttaacccagttgaatt |
24963882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 41648399 - 41648324
Alignment:
| Q |
11 |
gacgtgattctgtcttctcttcgtcgtcaaactcctctcacgtctacatatctctccttgtttcaactgagatcca |
86 |
Q |
| |
|
|||||||||||||||| | |||||||| |||||||||||||||||| || ||||| |||||| ||||||||||| |
|
|
| T |
41648399 |
gacgtgattctgtctttccgtcgtcgtcgaactcctctcacgtctacttagctctcgctgtttcgactgagatcca |
41648324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 8 - 579
Target Start/End: Complemental strand, 40403988 - 40403416
Alignment:
| Q |
8 |
gccgacgtgattctgtcttctcttcgtcgtcaaactcctctcacgtctacatatctctccttgtttcaactgagatccagcgtgttggtggttcagatcc |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40403988 |
gccggcgtgattctgtcttctcttcgtcgtcaaactcctctcacgtctacatatctctccttgtttcaactgagatccagcgtgttggtggttcagatcc |
40403889 |
T |
|
| Q |
108 |
ggcatgccagaggagaggaggcggtttaagatgaacgatacggaatgggatgtgt-ttgaagaccttgacatgtcgaggaaatgaagaatggaggtggtg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40403888 |
ggcatgccagaggagaggaggcggtttaagatgaacgatacggaatgggatgtgtgttgaagaccttgacatgttgaggaaatgaagaatggaggtggtg |
40403789 |
T |
|
| Q |
207 |
gtggttcagatccggccatggcgccaccggattcagagaaatgttggttgtttattttcaatacatatgcaaattgcaagcgaccaatttccagatactt |
306 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
40403788 |
gtggttcaaatccggccatggcgtcaccggattcagagaaatgttggctgtttattttcaatacatgtgcaaattgcaagcgagcaatttccagatactt |
40403689 |
T |
|
| Q |
307 |
tctctaacatcgctcttggttgaacaatctccctaacctaattcaaatttatttcctccacaacaaaacaaagcattgaatgacttaatttcagtttaag |
406 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40403688 |
tctctaacatctctcttggttgaacaatctccctaacctaattcaaatttatttcctccacaccaaaacaaagcattgaatgatttaatttcagtttaag |
40403589 |
T |
|
| Q |
407 |
aaaagttttgatggaaaggggcaataaaaaatatacatgatttcatcttgtccatctttattctttatcaatggcagagaagagaaaactaacttgacat |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40403588 |
aaaagttttgatggaaaggggcaataaaaaatatacatgatttcatcttgtccatctttattctttatcaatggcagagaagagaaaactaacttgacat |
40403489 |
T |
|
| Q |
507 |
aaattacaaacataaaatttaaccatgttgaattaaattacaaaattgattttccctttaacccagttgaatt |
579 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40403488 |
aaattacaaacataaaatttaaccatgttgaattaaattacaaaattgattttccctttaacacagttgaatt |
40403416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 7758880 - 7758965
Alignment:
| Q |
113 |
gccagaggagaggaggcggtttaagatgaacgatacggaatgggatgtgt-ttgaagaccttgacatgtcgaggaaatgaagaatg |
197 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| || || |||| |||||| ||||||||||| |||| ||||||||||| |
|
|
| T |
7758880 |
gccagaggagaggagacggtttaagatgaacgatacggattgagaggtgtgttgaaggccttgacatgttgagggaatgaagaatg |
7758965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1565 times since January 2019
Visitors: 1425