View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117E4 (Length: 486)
Name: NF0117E4
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117E4 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 4 - 478
Target Start/End: Original strand, 26642643 - 26643132
Alignment:
| Q |
4 |
caattgctacatgtttcgccattagaatggttaaattttgtggaagacgctgtgaagaacggttttcatgcagttgcagtaaaggtaacgaactatgagt |
103 |
Q |
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| T |
26642643 |
caattgctacatgtttcgccattagaatggttaaattttgtggaagacgctgtgaagaacggttttcatgcagttgcagtaaaggtaacgaaatatgcgt |
26642742 |
T |
|
| Q |
104 |
gtatcgtgtt-----------------cgagatttagcttagttaatgcattttctgaaatggacctattagttttgaatataattctgtagttttcgtc |
186 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
26642743 |
gtattgtgtttgtgataatgtgcaattcgagatttagcttagttaatgcattttctgaaatggacttattagttttgaataaaattctgtagttttcgtc |
26642842 |
T |
|
| Q |
187 |
acttttagtttttgaaatttgaatttcttgtgtttggatgcttaattagcaattactgtttggtgaataggcatgtgaaaatgcattgaggtgcattgga |
286 |
Q |
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| T |
26642843 |
acttttagttt--gaaatttgaatttcttgtgtttggatgcttaattagcaattactgtttggtgaataggcatgtgaaaatgcattgaggtgcattgga |
26642940 |
T |
|
| Q |
287 |
aacagcgatgttcaaaagcttggaagagacgtgatttctgataatttgaaggctaatactatcagtgagattactaggctcaggaacttttcactggcat |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26642941 |
aacagcgatgttcaaaagcttggaagagacgtgatttctgataatttgaaggctaatactatcagtgagattactaggctcaggaacttttcactggcat |
26643040 |
T |
|
| Q |
387 |
cgattacttcacgttctggtatatcttcattcgtttgcattgaacattcaaatgctgtttattgcactggcaagcatgtttaagtttaacta |
478 |
Q |
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| T |
26643041 |
cgattacttcacgttctggtatatcttcattcgtttgcattgaacattcaaatgctgtttattgcactggcaagcatgtttaagtttaacta |
26643132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 180 - 436
Target Start/End: Original strand, 26656303 - 26656559
Alignment:
| Q |
180 |
tttcgtcacttttagtttttgaaatttgaatttctt--gtgtttggatgcttaattagcaattactgtttggtgaataggcatgtgaaaatgcattgagg |
277 |
Q |
| |
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|||||||||||||||||| ||| ||||| ||| || ||||||| |||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26656303 |
tttcgtcacttttagttt--gaattttgagtttgttttgtgtttgaatgcataattagtaattattgtttggtgaataggcatgtgaaaatgcattgagg |
26656400 |
T |
|
| Q |
278 |
tgcattggaaacagcgatgttcaaaagcttggaagagacgtgatttctgataatttgaaggctaatactatcagtgagattactaggctcaggaactttt |
377 |
Q |
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||||||||||| | | |||||||||||||||||||||||| |||| |||| ||||||||||||||| ||||||| |||||||||||||||||||| ||| |
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| T |
26656401 |
tgcattggaaataacaatgttcaaaagcttggaagagacgcgattcctgaaaatttgaaggctaatgctatcagcgagattactaggctcaggaattttg |
26656500 |
T |
|
| Q |
378 |
cactggcatcgattacttcacgttctggtatatcttcattcgtttgcattgaacattca |
436 |
Q |
| |
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||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26656501 |
cactgacatcaattacttcacgttctggtatatcttcattggtttgcattgaacattca |
26656559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 26656079 - 26656170
Alignment:
| Q |
4 |
caattgctacatgtttcgccattagaatggttaaattttgtggaagacgctgtgaagaacggttttcatgcagttgcagtaaaggtaacgaa |
95 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
26656079 |
caattgcttcaagtttcgccattagaatggttaaattttgtggaagacgctgtgaagaacggttttcatgaagtttcagtaaaggtaacgaa |
26656170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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