View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117E6 (Length: 327)
Name: NF0117E6
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117E6 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 4 - 320
Target Start/End: Complemental strand, 19220327 - 19220011
Alignment:
| Q |
4 |
caattagaaccaatggttttccaggagttccttgtttttcctcaattcttctaagcaaatttccattatacaattttgcattttgtggtgtagcaccaat |
103 |
Q |
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| T |
19220327 |
caattggaaccaatggttttccaggagttccttgtttttcctcaattcttctaagcaaatttccattgtacaattttgcattttgtggtgtagcaccaat |
19220228 |
T |
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| Q |
104 |
ttcatcggcgtcgccatttgaaggccaacctgtctcagaaaccttaacttcaacattggtataccctatcactttgattgcagcataaacagcatcaatt |
203 |
Q |
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| T |
19220227 |
ttcatcggcgtcgccatttgaaggccaacctgtctcagaaaccttaacttcaacattggtataccctatcactttgattgcagcataaacagcatcaatt |
19220128 |
T |
|
| Q |
204 |
tgagcatataacatgttatcataatgcaaatttgtgtttggatcaaccaaaccttcatttggttgaaataatgcatagtttaaagatacctcattagggt |
303 |
Q |
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| T |
19220127 |
tgagcatataacatgttatcataatgcaaatttgtgtttggatcaaccaaaccttcatttggttgaaataatgcatagtttaaagatacctcattagggt |
19220028 |
T |
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| Q |
304 |
tatctttatatgcaaaa |
320 |
Q |
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| T |
19220027 |
tatctttatatgcaaaa |
19220011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 321
Target Start/End: Original strand, 32856516 - 32856631
Alignment:
| Q |
206 |
agcatataacatgttatcataatgcaaatttgtgtttggatcaaccaaaccttcatttggttgaaataatgcatagtttaaagatacctcattagggtta |
305 |
Q |
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| T |
32856516 |
agcataaagcatgttatcataatgtaaatttgtattaggatcaaccattccttggttaggattaaataatacatagtctaaagatatttgattagggtca |
32856615 |
T |
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| Q |
306 |
tctttatatgcaaaat |
321 |
Q |
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| T |
32856616 |
ttcttataagcaaaat |
32856631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 238
Target Start/End: Complemental strand, 36381839 - 36381724
Alignment:
| Q |
123 |
gaaggccaacctgtctcagaaaccttaacttcaacattggtataccctatcactttgattgcagcataaacagcatcaatttgagcatataacatgttat |
222 |
Q |
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|||||||||||||||||||||| |||||| || | || | ||| ||||| | | || || ||||||||||| ||||| ||||||||||| |||||||||| |
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| T |
36381839 |
gaaggccaacctgtctcagaaatcttaacctcgatatcgctatgccctaccgcctttatagcagcataaacggcatcgatttgagcatacaacatgttat |
36381740 |
T |
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| Q |
223 |
cataatgcaaatttgt |
238 |
Q |
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| T |
36381739 |
cataatgcaaatttgt |
36381724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 34869133 - 34869189
Alignment:
| Q |
215 |
catgttatcataatgcaaatttgtgtttggatcaaccaaaccttcatttggttgaaa |
271 |
Q |
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||||||||||||||||| ||||| ||||||||||||| |||| ||||||||||| |
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| T |
34869133 |
catgttatcataatgcaggtttgtttttggatcaaccattccttggtttggttgaaa |
34869189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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