View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0117E6 (Length: 327)
Name: NF0117E6
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0117E6
Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 4 - 320
Target Start/End: Complemental strand, 19220327 - 19220011
Alignment:
Q
4
caattagaaccaatggttttccaggagttccttgtttttcctcaattcttctaagcaaatttccattatacaattttgcattttgtggtgtagcaccaat
103
Q
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
T
19220327
caattggaaccaatggttttccaggagttccttgtttttcctcaattcttctaagcaaatttccattgtacaattttgcattttgtggtgtagcaccaat
19220228
T
Q
104
ttcatcggcgtcgccatttgaaggccaacctgtctcagaaaccttaacttcaacattggtataccctatcactttgattgcagcataaacagcatcaatt
203
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
19220227
ttcatcggcgtcgccatttgaaggccaacctgtctcagaaaccttaacttcaacattggtataccctatcactttgattgcagcataaacagcatcaatt
19220128
T
Q
204
tgagcatataacatgttatcataatgcaaatttgtgtttggatcaaccaaaccttcatttggttgaaataatgcatagtttaaagatacctcattagggt
303
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
19220127
tgagcatataacatgttatcataatgcaaatttgtgtttggatcaaccaaaccttcatttggttgaaataatgcatagtttaaagatacctcattagggt
19220028
T
Q
304
tatctttatatgcaaaa
320
Q
|||||||||||||||||
T
19220027
tatctttatatgcaaaa
19220011
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 321
Target Start/End: Original strand, 32856516 - 32856631
Alignment:
Q
206
agcatataacatgttatcataatgcaaatttgtgtttggatcaaccaaaccttcatttggttgaaataatgcatagtttaaagatacctcattagggtta
305
Q
|||||| | ||||||||||||||| |||||||| || |||||||||| |||| || || | ||||||| |||||| |||||||| | |||||||| |
T
32856516
agcataaagcatgttatcataatgtaaatttgtattaggatcaaccattccttggttaggattaaataatacatagtctaaagatatttgattagggtca
32856615
T
Q
306
tctttatatgcaaaat
321
Q
| ||||| |||||||
T
32856616
ttcttataagcaaaat
32856631
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 238
Target Start/End: Complemental strand, 36381839 - 36381724
Alignment:
Q
123
gaaggccaacctgtctcagaaaccttaacttcaacattggtataccctatcactttgattgcagcataaacagcatcaatttgagcatataacatgttat
222
Q
|||||||||||||||||||||| |||||| || | || | ||| ||||| | | || || ||||||||||| ||||| ||||||||||| ||||||||||
T
36381839
gaaggccaacctgtctcagaaatcttaacctcgatatcgctatgccctaccgcctttatagcagcataaacggcatcgatttgagcatacaacatgttat
36381740
T
Q
223
cataatgcaaatttgt
238
Q
||||||||||||||||
T
36381739
cataatgcaaatttgt
36381724
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 34869133 - 34869189
Alignment:
Q
215
catgttatcataatgcaaatttgtgtttggatcaaccaaaccttcatttggttgaaa
271
Q
||||||||||||||||| ||||| ||||||||||||| |||| |||||||||||
T
34869133
catgttatcataatgcaggtttgtttttggatcaaccattccttggtttggttgaaa
34869189
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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