View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117E8 (Length: 683)
Name: NF0117E8
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117E8 |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 10 - 461
Target Start/End: Complemental strand, 2628849 - 2628398
Alignment:
| Q |
10 |
tagtactaatcaacgatggatacttcgtaagaataacatgattaacaaaatagagtattgttggatttttcatacaaaaactctagattggattattaaa |
109 |
Q |
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| T |
2628849 |
tagtactaaacaacgatggatacttcgtaagaataacatgattaacaaaatagattattgttggatttttcatacaaaaactctagattggattattaaa |
2628750 |
T |
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| Q |
110 |
aagcaatattaaaagatcttataagttgaacgatattaccattattatgtgtgacagtattgtaaaagtcttataaatacatgaatgtccagaacacaag |
209 |
Q |
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| T |
2628749 |
aagtaatattaaaagatcttataagttgaacgatattaccattgttaagtgtgacagtattgtaaaagtcttataaatacatgaatgtccagaacacaag |
2628650 |
T |
|
| Q |
210 |
ttcattacctgacaacacttaaaagcaagagctgaatacctatgaaaaattaaattacagaaccaaaatatatacctatgcatacacaaagatagctttt |
309 |
Q |
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| T |
2628649 |
ttcattacctgacaacacttaaaagcaagagctgaatacctatgaaaaattaaattacagaaccaaaatatatacctatgcatacacaaagatagctttt |
2628550 |
T |
|
| Q |
310 |
gcgggggtctggtatgggatgaataattgttcgggactgatttaggtaatccaatcagatttatgcacaatggtagaattagagggaggaaataaaagcg |
409 |
Q |
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| T |
2628549 |
gcaggggtctggtatgggatgaataattgttcgggactgatttaggtaatccaatcagatttatgcacaatggtagaattagagggaggaaataaaagcg |
2628450 |
T |
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| Q |
410 |
ttagaaaaagttagctccgaatttggcacgtggtaatttgggtgatatggaa |
461 |
Q |
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| T |
2628449 |
ttagaaaaagttagctccgaatttggcacgtggtaatttgggtgatatggaa |
2628398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 481 - 666
Target Start/End: Complemental strand, 2628358 - 2628173
Alignment:
| Q |
481 |
ttctctaatgtgaactgctgtgcggctgaagtggatgagattaagatgatttcactgaaatggctcctgagtaaactatgcaaaaactcatggcttactt |
580 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
2628358 |
ttctctaatgtgaactgctgtgcggctgaagtggatgagattaagatgatttcactgaaatggctcctgagtaaactacgcaaaaactcatgtcttactt |
2628259 |
T |
|
| Q |
581 |
tgaatggtgttggaacccttcactgtgtatgcttatgtattggggtctgctgtgaggtcgggtgctgattggtggctgngntttgg |
666 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
2628258 |
tgaatagtgttggaacccttcactgtgtatgcttatgtattggggtctgctgtgaggtcgggtgctgattggtggctgtgttttgg |
2628173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 413 - 446
Target Start/End: Complemental strand, 2628400 - 2628367
Alignment:
| Q |
413 |
gaaaaagttagctccgaatttggcacgtggtaat |
446 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
2628400 |
gaaaaagttagctccgaatttggcacgtggtaat |
2628367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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