View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117E9 (Length: 361)
Name: NF0117E9
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117E9 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 4 - 353
Target Start/End: Original strand, 172041 - 172390
Alignment:
| Q |
4 |
caattagatacagatgaaatatgtactaataattcaatggaatttcagagaaagagagaattatatgaacatgcttgcatgagtttgaattttgaactta |
103 |
Q |
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| T |
172041 |
caattggatacggatgaaatatgtactaataattcaatggaatttcagagaaagagaggattatatgaacatgtttgcatgagattgaattttgaactta |
172140 |
T |
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| Q |
104 |
atttacatatacaaaatgtttttaatgtgaagatgaagacctgttatatatcttctaatcaagcttcgtttggtgtggctttaagagaagagcaacattt |
203 |
Q |
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| T |
172141 |
atttacatatacaaaatgtttttaatgtgaagatgaagacctgttatatatcttctaatcaagcttcgtttggtgtggctttaagagaagagcaacattt |
172240 |
T |
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| Q |
204 |
tccttctagaaacttttcctttacacaccccttgcatgtgatgattcatgtcagactttgtttatggtctttatctgagctatttgcttataattcatgt |
303 |
Q |
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| T |
172241 |
tccttctagaaacgtttcctttacacacccgtttcatgtgatgattcatgtcacactttgtttatggtctttatctgagctatttgcttataattcatgt |
172340 |
T |
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| Q |
304 |
cagtaatatttattttgagagcaaaacgagtaggtttcatactcttacct |
353 |
Q |
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| T |
172341 |
cagtaatatttattttgagagcaaaacgagtaggtttcgtactcttacct |
172390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 4 - 352
Target Start/End: Complemental strand, 31045332 - 31045001
Alignment:
| Q |
4 |
caattagatacagatgaaatatgtactaataattcaatggaatttcagagaaagagagaattatatgaacatgcttgcatgagtttgaattttgaa-ctt |
102 |
Q |
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| T |
31045332 |
caattggatacggataaaatatgtactcataattcaatggaattttagagaaagagagggttatatgaacatgtttgcatgagtttaaattttgaatctt |
31045233 |
T |
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| Q |
103 |
aatttacatatacaaaatgtttttaatgtgaagatgaagacctgttatatatcttctaatcaagcttcgtttggtgtggctttaagagaagagcaacatt |
202 |
Q |
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| T |
31045232 |
aatttacatatacaaaaagtttttaatgtgaagatgaagacttgttatatgcc------gcaagcttcgtttggtgaggctttaggagaatagcaac-tt |
31045140 |
T |
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| Q |
203 |
ttccttctagaaacttttcctttacacaccccttgcatgtgatgattcatgtcagactttgtttatggtctttatctgagctatttgcttataattcatg |
302 |
Q |
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| T |
31045139 |
ttcctt-tacatacactgc--tga---ataccttgcatgagatgattcatgtcagac--tgtttatggtctttatctgagctctttgcttatagttcatg |
31045048 |
T |
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| Q |
303 |
tcagtaatatttattttgagagcaaaacgagtaggtttcatactcttacc |
352 |
Q |
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| T |
31045047 |
tcag---ttttgattttgaacgcaaaacgagtaggtttcgtactcttacc |
31045001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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