View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117_high_14 (Length: 386)
Name: NF0117_high_14
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 30 - 367
Target Start/End: Original strand, 15506359 - 15506697
Alignment:
| Q |
30 |
gaaagacatgccacaagaacttccgtagttggatttggtgaatccaatttctgtaccataagaaaaataaccattacccttgatgaaaaagttgaaataa |
129 |
Q |
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| T |
15506359 |
gaaagacatgccacaagaacttccgtagttggatttggtgaatccattttctgtaccataagaaaaataaccattacccttgatgaaaaagttgaaataa |
15506458 |
T |
|
| Q |
130 |
aactatgcaacagtagtgttcttgaatcatgtcagaatttattctattatttttagaacacgaaagtagatgtaacttcgaaataattcagtttggacaa |
229 |
Q |
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| T |
15506459 |
aactatgcaacagcagtgttcttgaatcatgtcagaatttattctattatctttagaacacgaaagtagatgtaacttcaaaataaatcactttggacaa |
15506558 |
T |
|
| Q |
230 |
actagctacgattagaggtctaataagagctagacaggttttatttgcagccaattggattggatgtagggaacagtttatg-tagttacatgatccgag |
328 |
Q |
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||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
15506559 |
actagttacgattagaggtctaataagagctagacaagttttatttgcagccaattggattggatgtagggaacagtttatgttagttacatgatccgag |
15506658 |
T |
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| Q |
329 |
ttgtgggtgaagtagtctttgtacatctttcattatcta |
367 |
Q |
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||||||| |||||||||||||||||||||||||||||| |
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| T |
15506659 |
ttgtgggataagtagtctttgtacatctttcattatcta |
15506697 |
T |
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