View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117_high_2 (Length: 768)
Name: NF0117_high_2
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 497; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 92 - 612
Target Start/End: Original strand, 41122193 - 41122713
Alignment:
| Q |
92 |
acggaggcatgttaaagaagtctgttgatgagttagatcatgtaagaaatctactagcttattgtaaacaacataatctttcttctgcaccttctaatag |
191 |
Q |
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| T |
41122193 |
acggaggcatgttaaagaagtctgttgatgagttagatcatgtaagaaatctactagcttattgtaaacaacataatctttcttctgcaccttctactag |
41122292 |
T |
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| Q |
192 |
ttctcatttttcaaatactccaattggtgcaaatttgaatacaagttttatggattcaacaaaggaagcacagctgaatggtgacaatggtggtgttgat |
291 |
Q |
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| T |
41122293 |
ttctcatttttcaaatactccaattggtgcaaatttgaatacaagttttatggattcaacaaaggaagcacagctgaatggtgacaatggtggtgttgat |
41122392 |
T |
|
| Q |
292 |
ccacagggaaaaccttaagtgagcaaattattctatgtttttctggccaattggttaagattacgtgtatcattttatttcaaattcaagaatcaagatt |
391 |
Q |
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| T |
41122393 |
ccacagggaaaaccttaagtgagcaaattattctatgtttttctggccaattggttaagatcatgtgtatcattttatttcaaattcaagaatcaagatt |
41122492 |
T |
|
| Q |
392 |
attttaattctttaatggtatctttctttgttttttggtatattcagctgtatctttctctcagtgtatggtgtatattgcgatataagaaattaaaggg |
491 |
Q |
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| T |
41122493 |
attttaattctttagtggtatctttctttgttttttggtatattcagctgtatctttctctcagtgtatggtgtatattgcgatataagaaattaaaggg |
41122592 |
T |
|
| Q |
492 |
aaaccatttttacatcattataagttgtatagtttagatttggcctcgattttgcaatgccaagttacttgcttatagtgcatgcttacaacgaataagg |
591 |
Q |
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| T |
41122593 |
aaaccattgttacatcattataagttgtatagtttagatttggcctctattttgcaatgccaagttacttgcttatagtgcatgcttacaacgaataagg |
41122692 |
T |
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| Q |
592 |
ttgtatgattgtagtagaatt |
612 |
Q |
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| T |
41122693 |
ttgtatgattgtagtagaatt |
41122713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 41122018 - 41122096
Alignment:
| Q |
1 |
aaaccagaaatcttctacaaggctcatcgtttgtttggtgtttccaacatggtgaagatgctaaagactattgatgatg |
79 |
Q |
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| T |
41122018 |
aaaccagaaatcttctacaaggctcatcgtttgtttggtgtttccaacatggtgaagatgctaaagaatattgatgatg |
41122096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 325123 - 325069
Alignment:
| Q |
25 |
catcgtttgtttggtgtttccaacatggtgaagatgctaaagactattgatgatg |
79 |
Q |
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| T |
325123 |
catcgtttgtttggtatttccaacatggtgaagacgctaaagtctattgatgatg |
325069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 36915077 - 36915126
Alignment:
| Q |
1 |
aaaccagaaatcttctacaaggctcatcgtttgtttggtgtttccaacat |
50 |
Q |
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| T |
36915077 |
aaaccaaaaatgttcagcaacgctcatcgtttgtttggtgtttccaacat |
36915126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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