View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0117_high_21 (Length: 355)

Name: NF0117_high_21
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0117_high_21
NF0117_high_21
[»] chr3 (13 HSPs)
chr3 (176-344)||(40419437-40419605)
chr3 (176-233)||(28884591-28884648)
chr3 (202-236)||(12044642-12044676)
chr3 (202-236)||(23906875-23906909)
chr3 (202-236)||(43441819-43441853)
chr3 (202-236)||(53932279-53932313)
chr3 (202-236)||(54233389-54233423)
chr3 (202-235)||(51717590-51717623)
chr3 (176-208)||(13159772-13159804)
chr3 (176-208)||(32931846-32931878)
chr3 (176-208)||(36819067-36819099)
chr3 (29-61)||(40419712-40419744)
chr3 (176-208)||(54233429-54233461)
[»] chr4 (21 HSPs)
chr4 (179-236)||(924962-925019)
chr4 (176-236)||(40721864-40721924)
chr4 (176-212)||(15515895-15515931)
chr4 (179-230)||(31049002-31049053)
chr4 (202-236)||(2193697-2193731)
chr4 (176-206)||(4100684-4100714)
chr4 (176-230)||(8456014-8456068)
chr4 (202-236)||(15638279-15638313)
chr4 (202-236)||(18568703-18568737)
chr4 (202-236)||(20056531-20056565)
chr4 (176-230)||(20956488-20956542)
chr4 (176-230)||(54165065-54165119)
chr4 (203-236)||(20632536-20632569)
chr4 (176-212)||(2193733-2193769)
chr4 (176-208)||(5208255-5208287)
chr4 (176-208)||(9032891-9032923)
chr4 (176-208)||(27001337-27001369)
chr4 (176-208)||(32901440-32901472)
chr4 (176-208)||(47106022-47106054)
chr4 (176-208)||(51377221-51377253)
chr4 (176-208)||(52669537-52669569)
[»] scaffold0332 (1 HSPs)
scaffold0332 (176-236)||(638-698)
[»] chr1 (14 HSPs)
chr1 (176-236)||(5959499-5959559)
chr1 (176-230)||(2257600-2257654)
chr1 (176-230)||(27563595-27563649)
chr1 (176-209)||(25995571-25995604)
chr1 (176-209)||(26501406-26501439)
chr1 (181-230)||(42256576-42256625)
chr1 (179-236)||(43056830-43056887)
chr1 (203-236)||(46902753-46902786)
chr1 (176-208)||(7203772-7203804)
chr1 (176-208)||(13813669-13813701)
chr1 (176-208)||(25130814-25130846)
chr1 (176-208)||(36669298-36669330)
chr1 (176-208)||(36930684-36930716)
chr1 (176-208)||(42843272-42843304)
[»] chr5 (16 HSPs)
chr5 (179-236)||(27005377-27005434)
chr5 (176-236)||(2051037-2051097)
chr5 (179-236)||(14070499-14070556)
chr5 (176-208)||(11464051-11464083)
chr5 (176-207)||(8959271-8959302)
chr5 (202-236)||(8959309-8959343)
chr5 (202-236)||(17489497-17489531)
chr5 (176-230)||(41192698-41192752)
chr5 (179-212)||(36548304-36548337)
chr5 (176-208)||(3263436-3263468)
chr5 (176-208)||(7144686-7144718)
chr5 (176-208)||(10522886-10522918)
chr5 (176-208)||(15622155-15622187)
chr5 (176-208)||(22920420-22920452)
chr5 (176-208)||(28501728-28501760)
chr5 (176-208)||(33823622-33823654)
[»] chr2 (9 HSPs)
chr2 (176-236)||(5954385-5954445)
chr2 (177-236)||(14954499-14954558)
chr2 (176-230)||(6851565-6851619)
chr2 (177-212)||(33030026-33030061)
chr2 (176-208)||(23048011-23048043)
chr2 (176-208)||(36383573-36383605)
chr2 (176-212)||(36909767-36909803)
chr2 (176-208)||(37966467-37966499)
chr2 (176-208)||(38572050-38572082)
[»] chr6 (7 HSPs)
chr6 (176-235)||(24007436-24007495)
chr6 (176-209)||(27334975-27335008)
chr6 (176-209)||(27395715-27395748)
chr6 (176-208)||(3660281-3660313)
chr6 (202-236)||(1804018-1804052)
chr6 (176-208)||(1803980-1804012)
chr6 (176-208)||(3339427-3339459)
[»] chr7 (7 HSPs)
chr7 (176-230)||(38990212-38990266)
chr7 (202-236)||(1838347-1838381)
chr7 (202-236)||(8742532-8742566)
chr7 (202-236)||(10014843-10014877)
chr7 (202-236)||(37385121-37385155)
chr7 (176-236)||(12232904-12232963)
chr7 (176-208)||(42431834-42431866)
[»] chr8 (13 HSPs)
chr8 (176-230)||(29509377-29509431)
chr8 (176-212)||(37562065-37562101)
chr8 (177-212)||(36497773-36497808)
chr8 (202-236)||(2597048-2597082)
chr8 (176-230)||(32185572-32185626)
chr8 (176-209)||(10344439-10344472)
chr8 (181-230)||(20895900-20895949)
chr8 (176-208)||(2597088-2597120)
chr8 (176-212)||(7129644-7129680)
chr8 (176-208)||(30927859-30927891)
chr8 (176-208)||(33817268-33817300)
chr8 (202-234)||(37562031-37562063)
chr8 (176-228)||(39359847-39359899)
[»] scaffold0002 (1 HSPs)
scaffold0002 (176-208)||(147184-147216)


Alignment Details
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 176 - 344
Target Start/End: Complemental strand, 40419605 - 40419437
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatcactactcgtgacaataaggttcaaaagaacattatggttaaaaaat 275  Q
    |||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40419605 gaccaataaaaagatagaaaaacaatgttgtcatcaattggatgtacaaatatcactactcgtgacaataaggttcaaaagaacattatggttaaaaaat 40419506  T
Q  276 taaaggttcagaaatcttcggagtagatttgtgctttgaatgcttattaagacttttgtgtgtgttcat 344  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40419505 taaaggttcagaaatcttcagagtagatctgtgctttgaatgcttattaagacttttgtgtgtgttcat 40419437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 28884591 - 28884648
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatcacta 233  Q
    ||||||||| ||||||||||| ||| ||||| |||||||| |||||||||||||||||    
T  28884591 gaccaataagaagagagaaaatcaaagttgtgatcaattggatgtacaaatatcacta 28884648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 12044676 - 12044642
Alignment:
Q  202 gttgtcatcaattgcatgtacaaatatcactactc 236  Q
    |||||||||||||| ||||||||||||||||||||    
T  12044676 gttgtcatcaattggatgtacaaatatcactactc 12044642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 23906909 - 23906875
Alignment:
Q  202 gttgtcatcaattgcatgtacaaatatcactactc 236  Q
    |||||||||||||| ||||||||||||||||||||    
T  23906909 gttgtcatcaattggatgtacaaatatcactactc 23906875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 43441819 - 43441853
Alignment:
Q  202 gttgtcatcaattgcatgtacaaatatcactactc 236  Q
    |||||||||||||| ||||||||||||||||||||    
T  43441819 gttgtcatcaattggatgtacaaatatcactactc 43441853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 53932313 - 53932279
Alignment:
Q  202 gttgtcatcaattgcatgtacaaatatcactactc 236  Q
    |||||||||||||| ||||||||||||||||||||    
T  53932313 gttgtcatcaattggatgtacaaatatcactactc 53932279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 54233423 - 54233389
Alignment:
Q  202 gttgtcatcaattgcatgtacaaatatcactactc 236  Q
    |||||||||||||| ||||||||||||||||||||    
T  54233423 gttgtcatcaattggatgtacaaatatcactactc 54233389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 51717590 - 51717623
Alignment:
Q  202 gttgtcatcaattgcatgtacaaatatcactact 235  Q
    |||||||||||||| |||||||||||||||||||    
T  51717590 gttgtcatcaattggatgtacaaatatcactact 51717623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 13159772 - 13159804
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  13159772 gaccaataagaagagagaaaaacaaggttgtca 13159804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 32931878 - 32931846
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  32931878 gaccaataagaagagagaaaaacaaggttgtca 32931846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 36819067 - 36819099
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  36819067 gaccaataagaagagagaaaaacaaggttgtca 36819099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 40419744 - 40419712
Alignment:
Q  29 cttctgtaatgctctgtgtttaatatcgtgaca 61  Q
    ||||||||||||| |||||||||||||||||||    
T  40419744 cttctgtaatgctatgtgtttaatatcgtgaca 40419712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 54233461 - 54233429
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  54233461 gaccaataagaagagagaaaaacaaggttgtca 54233429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 925019 - 924962
Alignment:
Q  179 caataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatcactactc 236  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  925019 caataaaaagatagaaaaacaaggttgtcatcaattgaatgtacaaatatcactactc 924962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 40721924 - 40721864
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatcactactc 236  Q
    |||||||||||| ||||||||||||  |||||||||| || ||||||| ||||||||||||    
T  40721924 gaccaataaaaaaagagaaaaacaatattgtcatcaaatggatgtacatatatcactactc 40721864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 15515895 - 15515931
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcatcaa 212  Q
    ||||||||||||| |||||||||||||||||||||||    
T  15515895 gaccaataaaaagtgagaaaaacaaggttgtcatcaa 15515931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 31049002 - 31049053
Alignment:
Q  179 caataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatca 230  Q
    |||| ||||||||||||||||| |||||||| || || ||||||||||||||    
T  31049002 caatcaaaagagagaaaaacaaagttgtcattaaatggatgtacaaatatca 31049053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 2193731 - 2193697
Alignment:
Q  202 gttgtcatcaattgcatgtacaaatatcactactc 236  Q
    |||||||||||||| ||||||||||||||||||||    
T  2193731 gttgtcatcaattggatgtacaaatatcactactc 2193697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 206
Target Start/End: Complemental strand, 4100714 - 4100684
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgt 206  Q
    |||||||||||||||||||||||||||||||    
T  4100714 gaccaataaaaagagagaaaaacaaggttgt 4100684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 8456014 - 8456068
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatca 230  Q
    |||||||||||||||||||||| |||||||||| ||| ||  ||| |||||||||    
T  8456014 gaccaataaaaagagagaaaaagaaggttgtcaccaaatggttgttcaaatatca 8456068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 15638279 - 15638313
Alignment:
Q  202 gttgtcatcaattgcatgtacaaatatcactactc 236  Q
    |||||||||||||| ||||||||||||||||||||    
T  15638279 gttgtcatcaattggatgtacaaatatcactactc 15638313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 18568737 - 18568703
Alignment:
Q  202 gttgtcatcaattgcatgtacaaatatcactactc 236  Q
    |||||||||||||| ||||||||||||||||||||    
T  18568737 gttgtcatcaattggatgtacaaatatcactactc 18568703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 20056531 - 20056565
Alignment:
Q  202 gttgtcatcaattgcatgtacaaatatcactactc 236  Q
    |||||||||||||| ||||||||||||||||||||    
T  20056531 gttgtcatcaattggatgtacaaatatcactactc 20056565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 20956542 - 20956488
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatca 230  Q
    ||||||| ||||||||||||||||| |||||||| || |  ||||||||||||||    
T  20956542 gaccaatcaaaagagagaaaaacaaagttgtcattaaatagatgtacaaatatca 20956488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 54165119 - 54165065
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatca 230  Q
    ||||||| ||||||||| ||||||| |||||||| || || ||||||||||||||    
T  54165119 gaccaatcaaaagagaggaaaacaaagttgtcattaaatggatgtacaaatatca 54165065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 20632569 - 20632536
Alignment:
Q  203 ttgtcatcaattgcatgtacaaatatcactactc 236  Q
    ||||||||||||| ||||||||||||||||||||    
T  20632569 ttgtcatcaattggatgtacaaatatcactactc 20632536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 2193769 - 2193733
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcatcaa 212  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  2193769 gaccaataagaagagagaaaaacaagattgtcatcaa 2193733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 5208287 - 5208255
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  5208287 gaccaataagaagagagaaaaacaaggttgtca 5208255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 9032891 - 9032923
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    |||||||||||| ||||||||||||||||||||    
T  9032891 gaccaataaaaaaagagaaaaacaaggttgtca 9032923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 27001369 - 27001337
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  27001369 gaccaataagaagagagaaaaacaaggttgtca 27001337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 32901440 - 32901472
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    |||||||||||||||||||||||||| ||||||    
T  32901440 gaccaataaaaagagagaaaaacaagattgtca 32901472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 47106022 - 47106054
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  47106022 gaccaataagaagagagaaaaacaaggttgtca 47106054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 51377253 - 51377221
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  51377253 gaccaataagaagagagaaaaacaaggttgtca 51377221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 52669569 - 52669537
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    |||||||||||||||||||||||||| ||||||    
T  52669569 gaccaataaaaagagagaaaaacaagattgtca 52669537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 638 - 698
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatcactactc 236  Q
    ||||||||| |||||||| |||||| |||||||||||||| ||||||||||||||||||||    
T  638 gaccaataagaagagagagaaacaaagttgtcatcaattggatgtacaaatatcactactc 698  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 5959499 - 5959559
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatcactactc 236  Q
    ||||||||| ||||||||||| ||| |||||||||||||| ||||||||||||||||||||    
T  5959499 gaccaataagaagagagaaaatcaaagttgtcatcaattggatgtacaaatatcactactc 5959559  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 2257654 - 2257600
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatca 230  Q
    ||||||| ||||||||| ||||||| ||||||||||| || ||||||||||||||    
T  2257654 gaccaatcaaaagagaggaaaacaaagttgtcatcaaatggatgtacaaatatca 2257600  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 27563595 - 27563649
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatca 230  Q
    ||||||| |||||||||||||||||  ||||||| || || ||||||||||||||    
T  27563595 gaccaatcaaaagagagaaaaacaaaattgtcattaaatggatgtacaaatatca 27563649  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 25995571 - 25995604
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcat 209  Q
    |||||||||||||||||||||| |||||||||||    
T  25995571 gaccaataaaaagagagaaaaataaggttgtcat 25995604  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 26501406 - 26501439
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcat 209  Q
    ||||||||| ||||||||||||||||||||||||    
T  26501406 gaccaataagaagagagaaaaacaaggttgtcat 26501439  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 42256576 - 42256625
Alignment:
Q  181 ataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatca 230  Q
    |||| |||| ||||||||||||||||||| || || ||||||||||||||    
T  42256576 ataagaagaaagaaaaacaaggttgtcatgaaatggatgtacaaatatca 42256625  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 43056830 - 43056887
Alignment:
Q  179 caataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatcactactc 236  Q
    ||||| |||||||||||||||| ||||| |||||||| || |||| |||||| |||||    
T  43056830 caatagaaagagagaaaaacaaagttgttatcaattggatttacatatatcattactc 43056887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 46902753 - 46902786
Alignment:
Q  203 ttgtcatcaattgcatgtacaaatatcactactc 236  Q
    ||||||||||||| ||||||||||||||||||||    
T  46902753 ttgtcatcaattggatgtacaaatatcactactc 46902786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 7203804 - 7203772
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    |||||||| ||||||||||||||||||||||||    
T  7203804 gaccaatagaaagagagaaaaacaaggttgtca 7203772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 13813669 - 13813701
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  13813669 gaccaataagaagagagaaaaacaaggttgtca 13813701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 25130814 - 25130846
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  25130814 gaccaataagaagagagaaaaacaaggttgtca 25130846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 36669330 - 36669298
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  36669330 gaccaataagaagagagaaaaacaaggttgtca 36669298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 36930716 - 36930684
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    |||||||||||||||||||||| ||||||||||    
T  36930716 gaccaataaaaagagagaaaaagaaggttgtca 36930684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 42843304 - 42843272
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  42843304 gaccaataagaagagagaaaaacaaggttgtca 42843272  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 27005434 - 27005377
Alignment:
Q  179 caataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatcactactc 236  Q
    |||||| ||||||||||||||||||| |||||||||| || |||||||||||||||||    
T  27005434 caataagaagagagaaaaacaaggttatcatcaattggatatacaaatatcactactc 27005377  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 2051037 - 2051097
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatcactactc 236  Q
    ||||||||| ||||||||||||||| ||||||||||| |  ||||||||||||||||||||    
T  2051037 gaccaataagaagagagaaaaacaatgttgtcatcaaatagatgtacaaatatcactactc 2051097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 14070556 - 14070499
Alignment:
Q  179 caataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatcactactc 236  Q
    |||||| ||| ||||||||||| ||||||||||| || ||||||||||||||||||||    
T  14070556 caataagaagtgagaaaaacaaagttgtcatcaaatggatgtacaaatatcactactc 14070499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 11464083 - 11464051
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    |||||||||||||||||||||||||||||||||    
T  11464083 gaccaataaaaagagagaaaaacaaggttgtca 11464051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 207
Target Start/End: Original strand, 8959271 - 8959302
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtc 207  Q
    ||||||||||||||||||||||||||||||||    
T  8959271 gaccaataaaaagagagaaaaacaaggttgtc 8959302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 8959309 - 8959343
Alignment:
Q  202 gttgtcatcaattgcatgtacaaatatcactactc 236  Q
    |||||||||||||| ||||||||||||||||||||    
T  8959309 gttgtcatcaattggatgtacaaatatcactactc 8959343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 17489497 - 17489531
Alignment:
Q  202 gttgtcatcaattgcatgtacaaatatcactactc 236  Q
    |||||||||||||| ||||||||||||||||||||    
T  17489497 gttgtcatcaattggatgtacaaatatcactactc 17489531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 41192698 - 41192752
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatca 230  Q
    ||||||| ||||||||||||||||| ||||| || || || ||||||||||||||    
T  41192698 gaccaatcaaaagagagaaaaacaaagttgtaattaaatggatgtacaaatatca 41192752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 36548337 - 36548304
Alignment:
Q  179 caataaaaagagagaaaaacaaggttgtcatcaa 212  Q
    ||||||||| ||||||||||||||||||||||||    
T  36548337 caataaaaatagagaaaaacaaggttgtcatcaa 36548304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 3263468 - 3263436
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  3263468 gaccaataagaagagagaaaaacaaggttgtca 3263436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 7144686 - 7144718
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    |||||||||||||||||||||| ||||||||||    
T  7144686 gaccaataaaaagagagaaaaagaaggttgtca 7144718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 10522886 - 10522918
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  10522886 gaccaataagaagagagaaaaacaaggttgtca 10522918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 15622155 - 15622187
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  15622155 gaccaataagaagagagaaaaacaaggttgtca 15622187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 22920452 - 22920420
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  22920452 gaccaataagaagagagaaaaacaaggttgtca 22920420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 28501728 - 28501760
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  28501728 gaccaataagaagagagaaaaacaaggttgtca 28501760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 33823654 - 33823622
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  33823654 gaccaataagaagagagaaaaacaaggttgtca 33823622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 5954445 - 5954385
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatcactactc 236  Q
    ||||||||| |||||||| ||||||  ||||||||||||| ||||||||||||||||||||    
T  5954445 gaccaataagaagagagagaaacaaaattgtcatcaattggatgtacaaatatcactactc 5954385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 14954558 - 14954499
Alignment:
Q  177 accaataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatcactactc 236  Q
    |||||| |||| |||||||||||||||||||||||| |  ||||||| ||||||||||||    
T  14954558 accaattaaaaaagagaaaaacaaggttgtcatcaaattgatgtacatatatcactactc 14954499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 6851619 - 6851565
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatca 230  Q
    ||||||| ||||||||||||||||| |||||||| || || ||||||||||||||    
T  6851619 gaccaatcaaaagagagaaaaacaaagttgtcattaaatggatgtacaaatatca 6851565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 212
Target Start/End: Complemental strand, 33030061 - 33030026
Alignment:
Q  177 accaataaaaagagagaaaaacaaggttgtcatcaa 212  Q
    ||||||||||| ||||||||||||||||||||||||    
T  33030061 accaataaaaatagagaaaaacaaggttgtcatcaa 33030026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 23048043 - 23048011
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  23048043 gaccaataagaagagagaaaaacaaggttgtca 23048011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 36383573 - 36383605
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  36383573 gaccaataagaagagagaaaaacaaggttgtca 36383605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 36909803 - 36909767
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcatcaa 212  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  36909803 gaccaataagaagagagaaaaacaaagttgtcatcaa 36909767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 37966467 - 37966499
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  37966467 gaccaataagaagagagaaaaacaaggttgtca 37966499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 38572050 - 38572082
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  38572050 gaccaataagaagagagaaaaacaaggttgtca 38572082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 24007495 - 24007436
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatcactact 235  Q
    |||||||| |||||||||||| ||||||||| |||||||| |||||||||||||| ||||    
T  24007495 gaccaatagaaagagagaaaagcaaggttgttatcaattggatgtacaaatatcattact 24007436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 27334975 - 27335008
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcat 209  Q
    ||||||||||||||||||||||||||||||||||    
T  27334975 gaccaataaaaagagagaaaaacaaggttgtcat 27335008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 27395715 - 27395748
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcat 209  Q
    ||||||||||||||||||||||||||||||||||    
T  27395715 gaccaataaaaagagagaaaaacaaggttgtcat 27395748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 3660313 - 3660281
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    |||||||||||||||||||||||||||||||||    
T  3660313 gaccaataaaaagagagaaaaacaaggttgtca 3660281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 1804018 - 1804052
Alignment:
Q  202 gttgtcatcaattgcatgtacaaatatcactactc 236  Q
    |||||||||||||| ||||||||||||||||||||    
T  1804018 gttgtcatcaattggatgtacaaatatcactactc 1804052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 1803980 - 1804012
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  1803980 gaccaataagaagagagaaaaacaaggttgtca 1804012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 3339459 - 3339427
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    |||||||||||||||||||||||||| ||||||    
T  3339459 gaccaataaaaagagagaaaaacaagattgtca 3339427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 38990212 - 38990266
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatca 230  Q
    |||||||||||| |||||||||||||||||||||||| || |||| |||||||||    
T  38990212 gaccaataaaaatagagaaaaacaaggttgtcatcaaatggatgtccaaatatca 38990266  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 1838381 - 1838347
Alignment:
Q  202 gttgtcatcaattgcatgtacaaatatcactactc 236  Q
    |||||||||||||| ||||||||||||||||||||    
T  1838381 gttgtcatcaattggatgtacaaatatcactactc 1838347  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 8742532 - 8742566
Alignment:
Q  202 gttgtcatcaattgcatgtacaaatatcactactc 236  Q
    |||||||||||||| ||||||||||||||||||||    
T  8742532 gttgtcatcaattggatgtacaaatatcactactc 8742566  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 10014877 - 10014843
Alignment:
Q  202 gttgtcatcaattgcatgtacaaatatcactactc 236  Q
    |||||||||||||| ||||||||||||||||||||    
T  10014877 gttgtcatcaattggatgtacaaatatcactactc 10014843  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 37385155 - 37385121
Alignment:
Q  202 gttgtcatcaattgcatgtacaaatatcactactc 236  Q
    |||||||||||||| ||||||||||||||||||||    
T  37385155 gttgtcatcaattggatgtacaaatatcactactc 37385121  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 12232963 - 12232904
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatcactactc 236  Q
    |||||||||| ||||||||||| ||||||||||  |||||  ||||||||||||| |||||    
T  12232963 gaccaataaatagagagaaaaagaaggttgtcacaaattg-ttgtacaaatatcattactc 12232904  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 42431834 - 42431866
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  42431834 gaccaataagaagagagaaaaacaaggttgtca 42431866  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 29509377 - 29509431
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatca 230  Q
    ||||||||||||||||| ||||||| |||||||| || || ||||||||||||||    
T  29509377 gaccaataaaaagagaggaaaacaaagttgtcattaaatgaatgtacaaatatca 29509431  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 37562101 - 37562065
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcatcaa 212  Q
    ||||||||| |||||||||||||||||||||||||||    
T  37562101 gaccaataagaagagagaaaaacaaggttgtcatcaa 37562065  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 212
Target Start/End: Original strand, 36497773 - 36497808
Alignment:
Q  177 accaataaaaagagagaaaaacaaggttgtcatcaa 212  Q
    |||||||||||||||||||||||||||||| |||||    
T  36497773 accaataaaaagagagaaaaacaaggttgttatcaa 36497808  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 2597082 - 2597048
Alignment:
Q  202 gttgtcatcaattgcatgtacaaatatcactactc 236  Q
    |||||||||||||| ||||||||||||||||||||    
T  2597082 gttgtcatcaattgaatgtacaaatatcactactc 2597048  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 32185626 - 32185572
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatca 230  Q
    ||||||||| ||||||||||||||| ||||||||  | || ||||||||||||||    
T  32185626 gaccaataagaagagagaaaaacaaagttgtcatgtaatggatgtacaaatatca 32185572  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 10344439 - 10344472
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcat 209  Q
    |||||||||||||| |||||||||||||||||||    
T  10344439 gaccaataaaaagaaagaaaaacaaggttgtcat 10344472  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 20895949 - 20895900
Alignment:
Q  181 ataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatatca 230  Q
    |||| |||||||||||| ||||||||||| || || ||||||||||||||    
T  20895949 ataagaagagagaaaaataaggttgtcatgaaatggatgtacaaatatca 20895900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 2597120 - 2597088
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  2597120 gaccaataagaagagagaaaaacaaggttgtca 2597088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 7129644 - 7129680
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcatcaa 212  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  7129644 gaccaataagaagagagaaaaacaaagttgtcatcaa 7129680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 30927891 - 30927859
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  30927891 gaccaataagaagagagaaaaacaaggttgtca 30927859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 33817268 - 33817300
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    |||||||||||||||||||||||||| ||||||    
T  33817268 gaccaataaaaagagagaaaaacaagattgtca 33817300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 37562063 - 37562031
Alignment:
Q  202 gttgtcatcaattgcatgtacaaatatcactac 234  Q
    |||||||||||||| ||||||||||||||||||    
T  37562063 gttgtcatcaattggatgtacaaatatcactac 37562031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 39359847 - 39359899
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtcatcaattgcatgtacaaatat 228  Q
    ||||||||| ||| |||||||  ||||||||||||| ||| ||||||||||||    
T  39359847 gaccaataagaagggagaaaagtaaggttgtcatcatttgaatgtacaaatat 39359899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 147216 - 147184
Alignment:
Q  176 gaccaataaaaagagagaaaaacaaggttgtca 208  Q
    ||||||||| |||||||||||||||||||||||    
T  147216 gaccaataagaagagagaaaaacaaggttgtca 147184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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