View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117_high_27 (Length: 287)
Name: NF0117_high_27
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 26 - 265
Target Start/End: Original strand, 5266653 - 5266892
Alignment:
| Q |
26 |
atatatcatgttgataaggtgcttattcctttggacttctctaagcctaaggctctagctcccgctccttctacggcgaaggcacctaaagctgataagg |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5266653 |
atatatcatgttgataaggtgcttattcctttggacttctctaagcctaaggctctagctcccgctccttctacggcgaaggcacctaaagctgataagg |
5266752 |
T |
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| Q |
126 |
atagttcatctgaagatggtgatcagggtgagacaactaaggctacttctggtgccaacaatttgattagccatcaaggaacaatgtttgtgtctctttt |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5266753 |
atagttcatctgaagatggtgatcagggtgagacaactaaggctacttctggtgccaacaatttgattagccatcaaggaacaatgtttgtgtctctttt |
5266852 |
T |
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| Q |
226 |
tgttggtttagttgcagctataactatctccatttgatga |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
5266853 |
tgttggtttagttgcagctataactatctccatttgatga |
5266892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 26 - 230
Target Start/End: Original strand, 5269546 - 5269750
Alignment:
| Q |
26 |
atatatcatgttgataaggtgcttattcctttggacttctctaagcctaaggctctagctcccgctccttctacggcgaaggcacctaaagctgataagg |
125 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||| |
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| T |
5269546 |
atatatcatgttgataaggtgcttattccattggacttctctaagcctaaggctctagctcctgctccttctacggcaaaggcgcctaaagcagataagg |
5269645 |
T |
|
| Q |
126 |
atagttcatctgaagatggtgatcagggtgagacaactaaggctacttctggtgccaacaatttgattagccatcaaggaacaatgtttgtgtctctttt |
225 |
Q |
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||||||||||||||||||||||||| || ||| ||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
5269646 |
atagttcatctgaagatggtgatcaaggagagtcaactaaagctacttctggtgcaaacaatttgattagccttcaaggaacaatgtttgtgtccctttt |
5269745 |
T |
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| Q |
226 |
tgttg |
230 |
Q |
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|||| |
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| T |
5269746 |
ggttg |
5269750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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