View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117_high_3 (Length: 703)
Name: NF0117_high_3
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 12 - 598
Target Start/End: Original strand, 34431421 - 34432007
Alignment:
| Q |
12 |
agctgttgctaactcctatatacctttttggccccacaccccacttaactgattaccagaatcacggtgtcatcataattttatcaaaaactattgaaca |
111 |
Q |
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| T |
34431421 |
agctgttgctaactcctatatacctttttggccccacaccccacttaattgtttaacagaatcacggtgtcatcataattttatcaaaaactataaaaca |
34431520 |
T |
|
| Q |
112 |
aaattataatgttatcgtgattctgtcaaattcaccattcggatgagatatatgatatgatacatacttttcattcaaccttccaagcatatagaaacaa |
211 |
Q |
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| T |
34431521 |
aaattataatgttatcgtgattttgtcaaattcaccattcggatgagatatatgatatgatacatacttttcattcaaccttccaagcatatagaaacaa |
34431620 |
T |
|
| Q |
212 |
gcaatactctgatgaggatgataatgaatcactgacactacggccctccactgaatcacaagtactactccttgtctcatttgataatggagtagtggaa |
311 |
Q |
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| T |
34431621 |
gcaatactctgatgaggatgataatgaatcactgacactacggccctccactgaatcacaagtactactccttgtctcatttgataatggagtagtggaa |
34431720 |
T |
|
| Q |
312 |
gaagatgaacatgacaaagatggtgaaaataaagaaaatggtgacatagaatgacatgtaaaaacaggcttaaaaatgaacaaagcatgttttaaaccag |
411 |
Q |
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| T |
34431721 |
gaagatgaacatgacaaagatggtgaaaataaagaaaatggtgacatagaatgacatgtaaaaacaggcttaaaaatgaacaaagcatgttttaaaccag |
34431820 |
T |
|
| Q |
412 |
gactaaataaccaatcatgaacatcccaatatacctcaactctcattttgttgagatgaatcaattcattccctctaaatttccattgcaagtgcttcac |
511 |
Q |
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| T |
34431821 |
gactaaataaccaatcatgaacatcccaatatacctcaactctcattttgttgagatgaatcaattcattccctctaaatttccattgcaagtgcttcac |
34431920 |
T |
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| Q |
512 |
atgaaccaccaaatgcccatcaaatcttatctccatttctggttgaacttgaacaccaccaccaatcatcacagaatctccatctcc |
598 |
Q |
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| T |
34431921 |
atgaaccaccaaatgcccatcaaatcttatctccatttctggttgaacttgaacaccaccaccaatcatcacagaatctccatctcc |
34432007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 3e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 378 - 560
Target Start/End: Original strand, 43402744 - 43402926
Alignment:
| Q |
378 |
ggcttaaaaatgaacaaagcatgttttaaaccaggactaaataaccaatcatgaacatcccaatatacctcaactctcattttgttgagatgaatcaatt |
477 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||| ||||||||| | ||||||| ||| |
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| T |
43402744 |
ggcttaaaaataaacaaagcatgtttcaaaccaggactaaataaccaatcatgaacatcccaataaacttcaattctcattttactaagatgaactgatt |
43402843 |
T |
|
| Q |
478 |
cattccctctaaatttccattgcaagtgcttcacatgaaccaccaaatgcccatcaaatcttatctccatttctggttgaact |
560 |
Q |
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| T |
43402844 |
cattacctctaaacttccattgcaaatgcttcacatgaatcaccaaatgtccatcaattcttatctccatctctggctgaact |
43402926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 43402602 - 43402649
Alignment:
| Q |
179 |
ttttcattcaaccttccaagcatatagaaacaagcaatactctgatga |
226 |
Q |
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| T |
43402602 |
ttttcattcaaccttccaagcataaagaaacaagcaaaactctgatga |
43402649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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