View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0117_high_32 (Length: 262)
Name: NF0117_high_32
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117_high_32 |
 | |
|
| [»] scaffold1030 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 30 - 241
Target Start/End: Complemental strand, 35138806 - 35138595
Alignment:
| Q |
30 |
aatgatgcttaccatgaatgggagtatcatacaacaaaatataaggaactattagtggatcagaatctgagtgactcattaggaactactagtggtaatt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35138806 |
aatgatgcttaccatgaatgggagtatcatacaacaaaatataaggaactattagtggatcagaatctgagtgactcattaggaactactagtggtaatt |
35138707 |
T |
|
| Q |
130 |
cttcatttcaacgaattcattcttatttgagaatcaatagatccatgactgatttgattaaaaatcattcaaaaatggctctatatatttttcttgagac |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35138706 |
cttcatttcaacgaattcattcttatttgagaatcaatagatccatgactgatttgattaaaaatcattcaaaaatggctctatatatttttcttgagac |
35138607 |
T |
|
| Q |
230 |
tggccgtctctg |
241 |
Q |
| |
|
||||||| |||| |
|
|
| T |
35138606 |
tggccgtttctg |
35138595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 30 - 241
Target Start/End: Complemental strand, 35131498 - 35131287
Alignment:
| Q |
30 |
aatgatgcttaccatgaatgggagtatcatacaacaaaatataaggaactattagtggatcagaatctgagtgactcattaggaactactagtggtaatt |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35131498 |
aatgatgcttaccatgaatgggagtatcatacaacaaaatataaggaactattagtggatcggaatctgagcgactcattaggaactactagtggtaatt |
35131399 |
T |
|
| Q |
130 |
cttcatttcaacgaattcattcttatttgagaatcaatagatccatgactgatttgattaaaaatcattcaaaaatggctctatatatttttcttgagac |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35131398 |
cttcatttcaacgaattcattcttatttgagaatcaatagatccatgactgatttgattaaaaatcattcaaaaatggctctatatatttttcttgagac |
35131299 |
T |
|
| Q |
230 |
tggccgtctctg |
241 |
Q |
| |
|
||||||| |||| |
|
|
| T |
35131298 |
tggccgtttctg |
35131287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 31 - 232
Target Start/End: Complemental strand, 14278546 - 14278345
Alignment:
| Q |
31 |
atgatgcttaccatgaatgggagtatcatacaacaaaatataaggaactattagtggatcagaatctgagtgactcattaggaactactagtggtaattc |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| ||||||| |||| |
|
|
| T |
14278546 |
atgatgcttaccatgaatgggagtatcatacaacaaaatataaggaactattagtggatcaaaatctgagtgaaccatttggaactattagtggtgattc |
14278447 |
T |
|
| Q |
131 |
ttcatttcaacgaattcattcttatttgagaatcaatagatccatgactgatttgattaaaaatcattcaaaaatggctctatatatttttcttgagact |
230 |
Q |
| |
|
| ||| |||||| ||||||||||||||| |||||||||| || ||| || ||||||||||||||| |||||||||||| | ||||| | ||||||||| |
|
|
| T |
14278446 |
tccatctcaacgccttcattcttatttgaaaatcaatagaaccttgattggtttgattaaaaatcactcaaaaatggctttgtatatcctccttgagact |
14278347 |
T |
|
| Q |
231 |
gg |
232 |
Q |
| |
|
|| |
|
|
| T |
14278346 |
gg |
14278345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 14284025 - 14283826
Alignment:
| Q |
30 |
aatgatgcttaccatgaatgggagtatcatacaacaaaatataaggaactattagtggatcagaatctgagtgactcattaggaactactagtggtaatt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||| || | ||||||| ||||||| ||| |
|
|
| T |
14284025 |
aatgatgcttaccatgaatgggagtatcatacaacaaaatataaaggactattagtggatcagaatttgaggagatcttctggaactattagtggtgatt |
14283926 |
T |
|
| Q |
130 |
cttcatttcaacgaattcattcttatttgagaatcaatagatccatgactgatttgattaaaaatcattcaaaaatggctctatatatttttcttgagac |
229 |
Q |
| |
|
| | |||| ||| |||||||||||| | || |||||||||| ||| || ||| |||||||||||||| ||||||||| | |||||||| |||||||| |
|
|
| T |
14283925 |
ccttttttcgacgccatcattcttatttaaaaagcaatagatccttgattgcttttattaaaaatcattc-aaaatggctttgtatattttccttgagac |
14283827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 34 - 232
Target Start/End: Complemental strand, 14258703 - 14258505
Alignment:
| Q |
34 |
atgcttaccatgaatgggagtatcatacaacaaaatataaggaactattagtggatcagaatctgagtgactcattaggaactactagtggtaattcttc |
133 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| | |||||||||||| || ||| ||||| |||| ||||||| ||||| |||||| |
|
|
| T |
14258703 |
atgcttaccatgaatgggagtagcatacaacaaaatataaaggactattagtggagcataatttgagtagatcatgtggaactattagtgacgattcttt |
14258604 |
T |
|
| Q |
134 |
atttcaacgaattcattcttatttgagaatcaatagatccatgactgatttgattaaaaatcattcaaaaatggctctatatatttttcttgagactgg |
232 |
Q |
| |
|
|||| ||| |||||||||||||| || |||||||||| ||| | ||||||||||||||||||||||||| || | |||||||| ||||||||||| |
|
|
| T |
14258603 |
ctttcgacgccatcattcttatttgaaaagcaatagatccttgatttctttgattaaaaatcattcaaaaatgcctttgtatattttccttgagactgg |
14258505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1030 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: scaffold1030
Description:
Target: scaffold1030; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 31 - 232
Target Start/End: Original strand, 2944 - 3145
Alignment:
| Q |
31 |
atgatgcttaccatgaatgggagtatcatacaacaaaatataaggaactattagtggatcagaatctgagtgactcattaggaactactagtggtaattc |
130 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||| ||||||| ||||||| |||| |
|
|
| T |
2944 |
atgatgcttaccatgaatggaagtatcatacaacaaaatgtaaggaactattagtggatcaaaatctgagtgaaccatttggaactattagtggtgattc |
3043 |
T |
|
| Q |
131 |
ttcatttcaacgaattcattcttatttgagaatcaatagatccatgactgatttgattaaaaatcattcaaaaatggctctatatatttttcttgagact |
230 |
Q |
| |
|
| ||| |||||| ||||||||||||||| |||||||||| || ||| || ||||||||||||||| |||||||||||| | ||||| || ||||||||| |
|
|
| T |
3044 |
tccatctcaacgccttcattcttatttgaaaatcaatagaaccttgattggtttgattaaaaatcactcaaaaatggctttgtatatcttccttgagact |
3143 |
T |
|
| Q |
231 |
gg |
232 |
Q |
| |
|
|| |
|
|
| T |
3144 |
gg |
3145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1730 times since January 2019
Visitors: 1426