View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0117_high_42 (Length: 228)

Name: NF0117_high_42
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0117_high_42
NF0117_high_42
[»] chr5 (5 HSPs)
chr5 (79-169)||(32325811-32325901)
chr5 (79-169)||(7992408-7992498)
chr5 (79-169)||(12904980-12905070)
chr5 (170-228)||(26353461-26353519)
chr5 (118-169)||(34641930-34641981)
[»] chr7 (5 HSPs)
chr7 (78-169)||(36167730-36167821)
chr7 (80-169)||(19886572-19886661)
chr7 (80-169)||(32775171-32775260)
chr7 (79-170)||(12859245-12859336)
chr7 (126-171)||(11600122-11600167)
[»] chr8 (8 HSPs)
chr8 (79-167)||(1548139-1548227)
chr8 (79-168)||(34784519-34784608)
chr8 (79-170)||(23033395-23033486)
chr8 (79-165)||(3117707-3117793)
chr8 (84-170)||(3277517-3277603)
chr8 (79-169)||(20900774-20900864)
chr8 (94-141)||(29168561-29168608)
chr8 (133-169)||(15657347-15657383)
[»] chr2 (6 HSPs)
chr2 (79-167)||(44673172-44673260)
chr2 (79-169)||(25438287-25438377)
chr2 (96-165)||(37154903-37154972)
chr2 (118-169)||(6536545-6536596)
chr2 (118-170)||(21006375-21006427)
chr2 (118-170)||(24132210-24132262)
[»] chr6 (1 HSPs)
chr6 (79-171)||(13425676-13425768)
[»] chr3 (7 HSPs)
chr3 (79-174)||(53208685-53208780)
chr3 (79-165)||(32130160-32130246)
chr3 (79-169)||(7322855-7322945)
chr3 (97-169)||(9454604-9454676)
chr3 (170-228)||(26648626-26648684)
chr3 (186-228)||(26654636-26654679)
chr3 (170-228)||(20014736-20014793)
[»] chr4 (5 HSPs)
chr4 (79-169)||(16497910-16498000)
chr4 (79-167)||(2588491-2588579)
chr4 (78-167)||(5650758-5650847)
chr4 (94-169)||(52249500-52249575)
chr4 (118-169)||(28075449-28075500)


Alignment Details
Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 32325811 - 32325901
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  32325811 ggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtacgatcgtgcgatcctacgtgctgggactcgttcctgactaccttg 32325901  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 7992408 - 7992498
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||    
T  7992408 ggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactaccttg 7992498  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 12904980 - 12905070
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    ||||||||||||||||||||||| || ||| ||| ||||||||||| |||||||||||||||| ||| || ||||||||||||||||||||    
T  12904980 ggttcgtaagtaggatcgaagcatggtcgatgtgttgtggcacgtaagatcgtgcgatcctacgtgctggaactcgttcctgactaccttg 12905070  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 26353519 - 26353461
Alignment:
Q  170 accaccatcatcttcttcttaaaactttattttgtttttgaattctcttcatgaaactc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26353519 accaccatcatcttcttcttaaaactttattttgtttttgaattcccttcatgaaactc 26353461  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 34641930 - 34641981
Alignment:
Q  118 gcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    ||||||| |||||||||||||||||||| |||||||| ||||| ||||||||    
T  34641930 gcacgtaagatcgtgcgatcctacatgctgggactcgatcctggctaccttg 34641981  T

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Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 36167730 - 36167821
Alignment:
Q  78 tggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||    
T  36167730 tggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactaccttg 36167821  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 19886661 - 19886572
Alignment:
Q  80 gttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||||||||||    
T  19886661 gttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgtgatcctacgtgctgggactcgttcctgactaccttg 19886572  T

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Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 32775260 - 32775171
Alignment:
Q  80 gttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| | ||||| |||||||||||| |||||||||||||||||||||||    
T  32775260 gttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaaggtcgtgtgatcctacatgctgggactcgttcctgactaccttg 32775171  T

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Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 170
Target Start/End: Original strand, 12859245 - 12859336
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttga 170  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||| ||| ||||||| ||||||||||||||||    
T  12859245 ggttcgtaagtaggaccgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttga 12859336  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 11600122 - 11600167
Alignment:
Q  126 gatcgtgcgatcctacatgccgggactcgttcctgactaccttgac 171  Q
    ||||||||||||||||| || |||||||| ||||| ||||||||||    
T  11600122 gatcgtgcgatcctacaagctgggactcgatcctggctaccttgac 11600167  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 79 - 167
Target Start/End: Complemental strand, 1548227 - 1548139
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactacct 167  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  1548227 ggttcgtaagtaggatcgaagcacgttcgaggtgctgtggcacgtaagatcgtgcgatcctacatgctgggactcgttcctgactacct 1548139  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 168
Target Start/End: Original strand, 34784519 - 34784608
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactacctt 168  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||    
T  34784519 ggtttgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactacctt 34784608  T

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Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 23033486 - 23033395
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttga 170  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||||||||||||||| ||||||||||||||| ||||||||    
T  23033486 ggttcgtaagtaggatcgaagcacggtcgaggtgttgtggcacgtaagatcatgcgatcctacatgctgggactcgttcctgagtaccttga 23033395  T

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Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 165
Target Start/End: Complemental strand, 3117793 - 3117707
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactac 165  Q
    |||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||| ||| ||||||| |||||||||||    
T  3117793 ggttcgtaagtaggatcgaagcacggtcgaggtactgtggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactac 3117707  T

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Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 84 - 170
Target Start/End: Complemental strand, 3277603 - 3277517
Alignment:
Q  84 gtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttga 170  Q
    ||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||    
T  3277603 gtaagtaggattgaagcacggtcgaggtgttgtggcacgtaagatcgtgcgatcctacatgctgggattcgttcctgactaccttga 3277517  T

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Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 169
Target Start/End: Complemental strand, 20900864 - 20900774
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    |||| ||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| ||| |||||| ||||||||||||||||    
T  20900864 ggtttgtaagtaggatcgaagcacagtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggacttgttcctgactaccttg 20900774  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 29168561 - 29168608
Alignment:
Q  94 tcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctac 141  Q
    ||||||||||| ||||||||||||||||||| ||||||| ||||||||    
T  29168561 tcgaagcacggtcgaggtgctgtggcacgtaagatcgtgtgatcctac 29168608  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 15657383 - 15657347
Alignment:
Q  133 cgatcctacatgccgggactcgttcctgactaccttg 169  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  15657383 cgatcctacgtgctgggactcgttcctgactaccttg 15657347  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 79 - 167
Target Start/End: Complemental strand, 44673260 - 44673172
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactacct 167  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||    
T  44673260 ggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactacct 44673172  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 79 - 169
Target Start/End: Complemental strand, 25438377 - 25438287
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||| |||| ||||||||||| ||| |||||||||||||||||||||||    
T  25438377 ggttcgtaagtaggatcaaagcacggtcgaggtgctgtggcacgtaagatcatgcgatcctacgtgctgggactcgttcctgactaccttg 25438287  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 37154903 - 37154972
Alignment:
Q  96 gaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactac 165  Q
    ||||||||| |||| ||  |||||||||| ||||||||||||||||  |||||||||||||| |||||||    
T  37154903 gaagcacggtcgagatgtcgtggcacgtaagatcgtgcgatcctacgagccgggactcgttcttgactac 37154972  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 6536596 - 6536545
Alignment:
Q  118 gcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    ||||||| |||||||||||||||||||| |||||||| ||||| ||||||||    
T  6536596 gcacgtaagatcgtgcgatcctacatgctgggactcgatcctggctaccttg 6536545  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 21006375 - 21006427
Alignment:
Q  118 gcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttga 170  Q
    ||||||| |||||||||||||||| ||| |||||||| ||||| |||||||||    
T  21006375 gcacgtaagatcgtgcgatcctacgtgctgggactcgatcctggctaccttga 21006427  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 24132262 - 24132210
Alignment:
Q  118 gcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttga 170  Q
    ||||||| |||||||||||||||| ||| |||| ||| ||||| |||||||||    
T  24132262 gcacgtaagatcgtgcgatcctacgtgctgggattcgatcctggctaccttga 24132210  T

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Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 13425676 - 13425768
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttgac 171  Q
    |||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||| ||| | |||||||||||||||||||||||    
T  13425676 ggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacataagatcgtgcgatcctacgtgctgcgactcgttcctgactaccttgac 13425768  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 53208685 - 53208780
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttgaccac 174  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  53208685 ggtttgtaagtaggatcgaaacacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactaccttgcccac 53208780  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 79 - 165
Target Start/End: Complemental strand, 32130246 - 32130160
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactac 165  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| | |||||||||||||||||    
T  32130246 ggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgcgactcgttcctgactac 32130160  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 79 - 169
Target Start/End: Complemental strand, 7322945 - 7322855
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    ||||||||||||| |  ||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||| ||||||||    
T  7322945 ggttcgtaagtagaactgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctggctaccttg 7322855  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 9454676 - 9454604
Alignment:
Q  97 aagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||| |||| |||||| |||||||||||    
T  9454676 aagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacatgctgggaatcgttcttgactaccttg 9454604  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 26648626 - 26648684
Alignment:
Q  170 accaccatcatcttcttcttaaaactttattttgtttttgaattctcttcatgaaactc 228  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||||    
T  26648626 accaccatcatctttttcttaaaactttaatttgtttttgaattctcctcctgaaactc 26648684  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 26654636 - 26654679
Alignment:
Q  186 tcttaaaactttat-tttgtttttgaattctcttcatgaaactc 228  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  26654636 tcttaaaactttatatttgtttttgaattctcttcatgaaactc 26654679  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 20014793 - 20014736
Alignment:
Q  170 accaccatcatcttcttcttaaaactttattttgtttttgaattctcttcatgaaactc 228  Q
    ||||||| |||||||||||||||| ||| | ||||||||||||||| ||| ||||||||    
T  20014793 accaccaccatcttcttcttaaaatttt-tgttgtttttgaattctgttcctgaaactc 20014736  T

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Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 16497910 - 16498000
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    ||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||||    
T  16497910 ggttcgtaagtaggaccgaagcacggtcgaggtgctgtggcacatacgatcgtgcgatcctacgtgctgggactcgttcttgactaccttg 16498000  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 167
Target Start/End: Original strand, 2588491 - 2588579
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactacct 167  Q
    ||||||||||||||| ||||| |||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||    
T  2588491 ggttcgtaagtaggaccgaagtacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactacct 2588579  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 78 - 167
Target Start/End: Original strand, 5650758 - 5650847
Alignment:
Q  78 tggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactacct 167  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||  ||| |||||||||||| |||  ||||||||||||||||||||    
T  5650758 tggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtgagattgtgcgatcctacgtgcttggactcgttcctgactacct 5650847  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 52249500 - 52249575
Alignment:
Q  94 tcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    |||||||||||  |||||||||||||||||| |||||||||||||||| | | ||||||| |||||||||||||||    
T  52249500 tcgaagcacggtagaggtgctgtggcacgtaagatcgtgcgatcctacgtactgggactcattcctgactaccttg 52249575  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 28075500 - 28075449
Alignment:
Q  118 gcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    ||||||| ||||||||||||||||| || |||||||| ||||| ||||||||    
T  28075500 gcacgtaagatcgtgcgatcctacaagctgggactcgatcctggctaccttg 28075449  T

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