View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0117_high_44 (Length: 221)
Name: NF0117_high_44
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117_high_44 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 34431057 - 34431167
Alignment:
| Q |
21 |
acatcatcaccaaacactcgtcctcacttcccgggacaccaactctcattcacatgcatgaactttacattatatggccaaatacagacattcagttcag |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34431057 |
acatcatcaccaaacactcgtcctcacttcccgggacaccaactctcattcacatgcatgaactttatattatatggccaaatacagacattcagttcag |
34431156 |
T |
|
| Q |
121 |
taatctcttgt |
131 |
Q |
| |
|
||||||||||| |
|
|
| T |
34431157 |
taatctcttgt |
34431167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 34431223 - 34431257
Alignment:
| Q |
187 |
gacaacatacacctctggttgatacaaatatagct |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
34431223 |
gacaacatacacctctggttgatacaaatatagct |
34431257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1936 times since January 2019
Visitors: 1435