View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117_high_5 (Length: 525)
Name: NF0117_high_5
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 10 - 496
Target Start/End: Original strand, 30081443 - 30081927
Alignment:
| Q |
10 |
gcataggaattgagtagaagacagccactagaaaagggttatcctgtatttattaatgatatacaatttaatttttatgtattgacgctataagtttaca |
109 |
Q |
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| T |
30081443 |
gcataggaatttagtagaagacagccactagaacagggttatcctgtatttattaatgatatacaatttaatttttatgtattgacgctataagtttaca |
30081542 |
T |
|
| Q |
110 |
acgttggagtatataataaatccttaatgataaatgacaccagtagagatcattggtgttgtatgtgagaaatagaactctacatcccttttagtgggga |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30081543 |
acgttggagtatataataaatccttaatgataaatgacaccagtagagatcattggtgttgtatgtgagaaatagaactcaacatcccttttagtgggga |
30081642 |
T |
|
| Q |
210 |
agtcccttttggatcctagcagggtctagtattcaaaacttgtatcattccaattcgataaaatccggctagagcatctatctagattctagactatttc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30081643 |
agtcccttttggatcctagcagggtctagtattcaaaacttgtatcattccaattcgataaaatccggctagagcatctatctagattctagactatttc |
30081742 |
T |
|
| Q |
310 |
ctcctccattagctagggagatattttactacgataacaggtaaatagccacccacaaataagctcagtaggaaaaacaacagacaaaacatgctcaaag |
409 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
30081743 |
ctcctccattagctagggagatattctactacgataacaggtaaatagccacccacaaataagctcagtagaaaaaacaacagac--aacatgctcaaag |
30081840 |
T |
|
| Q |
410 |
aattgcaatgcagctgcatgtttgtattacaatatttcctaacaaaaactcttgccnnnnnnnaatcataataaaagaaagccgtag |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
30081841 |
aattgcaatgcagctgcatgtttgtattacaatatttcctaacaaaaactcttgcctttttttaatcattataaaagaaagccgtag |
30081927 |
T |
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