View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117_high_6 (Length: 516)
Name: NF0117_high_6
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 30 - 506
Target Start/End: Complemental strand, 32425624 - 32425148
Alignment:
| Q |
30 |
gaaactgctgctggagcttatccagaacttgctgttcgaactatggctaaaatttgtgttgaagctgagagtaccatcaactatggagatgtatttaaaa |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32425624 |
gaaactgctgctggagcttatccagaacttgctgttcgaactatggctaaaatttgtgttgaagctgagagtaccatcaactatggagatgtatttaaaa |
32425525 |
T |
|
| Q |
130 |
ggataatggagcactcaccagtaccgatgggcccattggagagtctagcttcttctgcggttaaaatggcgaactcagctaaagcagcacttatattggt |
229 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32425524 |
ggataatggagcactcaccagtaccgatgggcccattggagagtctagcttcttctgcggttaaaatggcaaactcagctaaagcagcacttatattggt |
32425425 |
T |
|
| Q |
230 |
tttaactagaggagggagtactgcaaaattagtggctaaatatagggcaggcatgccaattctttctgttgtcgttcctgagattaagaccgataccttt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32425424 |
tttaactagaggagggagtactgcaaaattagtggctaaatatagggcaggcatgccaattctttctgttgtcgttcctgagattaagaccgataccttt |
32425325 |
T |
|
| Q |
330 |
gattggtcctgcagtgatgaggtccctgccagacatagcttgatattccgaggattgattccagtactgagtgcgggttctgctagagcttctcatgcag |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32425324 |
gattggtcctgcagtgatgaggtccctgccagacatagcttgatattccgaggattgattccagtactgagtgcgggttctgctagagcttctcatgcag |
32425225 |
T |
|
| Q |
430 |
aaacaactgaagaggcactagacttcgccattcagtatgccaaaacaaaaggtctttgcaataacggggattctgtg |
506 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32425224 |
aaacaacagaagaggcactagacttcgccattcagtatgccaaaacaaaaggtctttgcaataacggggattctgtg |
32425148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 30 - 472
Target Start/End: Complemental strand, 32419346 - 32418904
Alignment:
| Q |
30 |
gaaactgctgctggagcttatccagaacttgctgttcgaactatggctaaaatttgtgttgaagctgagagtaccatcaactatggagatgtatttaaaa |
129 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||||| ||||| |||||||||||||||| |||| |
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|
| T |
32419346 |
gaaactgctgctggagcttatccagaactcgctgttcgtacaatggctaaaatatgtgttgaagctgagagcaccattgactatggagatgtattcaaaa |
32419247 |
T |
|
| Q |
130 |
ggataatggagcactcaccagtaccgatgggcccattggagagtctagcttcttctgcggttaaaatggcgaactcagctaaagcagcacttatattggt |
229 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| |||| || || ||||| |||| |||||| || |||||||| |
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| T |
32419246 |
ggataatggagcactcaccagtacccatgagcccgttggagagtctagcttcttctgctgttagaacagccaactctgctagagcagctctcatattggt |
32419147 |
T |
|
| Q |
230 |
tttaactagaggagggagtactgcaaaattagtggctaaatatagggcaggcatgccaattctttctgttgtcgttcctgagattaagaccgataccttt |
329 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||| ||| |||||| |||||||||||||||||| ||||||||| | | ||| ||||||||| |
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|
| T |
32419146 |
tttaactagaggagggactactgcaaaattggtggctaaatacaggccaggcacgccaattctttctgttgttgttcctgagctaacgactgataccttt |
32419047 |
T |
|
| Q |
330 |
gattggtcctgcagtgatgaggtccctgccagacatagcttgatattccgaggattgattccagtactgagtgcgggttctgctagagcttctcatgcag |
429 |
Q |
| |
|
|||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||| || | ||||| | ||||||||||||||||||||||| |
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|
| T |
32419046 |
gattggtcatgcagtgatgagtcccctgcgagacatagcttgatattccgaggattgattccaatattaagtgcagcttctgctagagcttctcatgcag |
32418947 |
T |
|
| Q |
430 |
aaacaactgaagaggcactagacttcgccattcagtatgccaa |
472 |
Q |
| |
|
||||||| ||||| ||| |||| || ||| |||| | |||||| |
|
|
| T |
32418946 |
aaacaacagaagatgcaatagaatttgcccttcaatgtgccaa |
32418904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 30 - 506
Target Start/End: Complemental strand, 40596330 - 40595854
Alignment:
| Q |
30 |
gaaactgctgctggagcttatccagaacttgctgttcgaactatggctaaaatttgtgttgaagctgagagtaccatcaactatggagatgtatttaaaa |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40596330 |
gaaactgctgctggagcttatccagaacttgctgttcgaactatggctaaaatttgtgttgaagctgagagtaccattaactatggagatgtatttaaaa |
40596231 |
T |
|
| Q |
130 |
ggataatggagcactcaccagtaccgatgggcccattggagagtctagcttcttctgcggttaaaatggcgaactcagctaaagcagcacttatattggt |
229 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40596230 |
ggataatggagcactcaccagtacccatgagcccattggagagtctagcttcttctgcagttaaaatggccaactcagctaaagcagcacttatattggt |
40596131 |
T |
|
| Q |
230 |
tttaactagaggagggagtactgcaaaattagtggctaaatatagggcaggcatgccaattctttctgttgtcgttcctgagattaagaccgataccttt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || || ||| |
|
|
| T |
40596130 |
tttaactagaggagggagtactgcaaaattagtggctaaatacagggctggcatgccaattctttctgttgtcgttcctgagattaagactgacactttt |
40596031 |
T |
|
| Q |
330 |
gattggtcctgcagtgatgaggtccctgccagacatagcttgatattccgaggattgattccagtactgagtgcgggttctgctagagcttctcatgcag |
429 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||| ||| |
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|
| T |
40596030 |
gattggtcctgcagtgatgaggcccctgccagacatagcttgatattccgaggattgattccagtactcagcgcaggttctgctagagcttctcacacag |
40595931 |
T |
|
| Q |
430 |
aaacaactgaagaggcactagacttcgccattcagtatgccaaaacaaaaggtctttgcaataacggggattctgtg |
506 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
40595930 |
aaacaacagaagaggcactagacttcgccattcagtatgccaaaacaaagggtctctgcaataacggggattctgtg |
40595854 |
T |
|
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