View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0117_high_8 (Length: 433)
Name: NF0117_high_8
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 27 - 420
Target Start/End: Original strand, 35686015 - 35686410
Alignment:
| Q |
27 |
aggatactaatgagaaagttgcaattaagaagattagcaacatctttgataattgtgttgattcaatgagaagtttaagggagatgatgctgcttagaaa |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
35686015 |
aggatactaatgagaaagttgcaattaagaagattagcaacatctttgataattgtgttgattcaatgaaaactttaagggagatgatgctgcttagaaa |
35686114 |
T |
|
| Q |
127 |
tattcgacatgaaaatgtgatcgttttgaaagatttatgatgccggtgcatagaacaagttttaaggatgtctacttggtttatgaactcatggatacag |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35686115 |
tattcgacatgaaaatgtgatcgttttgaaagatttatgatgccggtacatagaacaagttttaaggatgtctacttggtttatgaactcatggatacag |
35686214 |
T |
|
| Q |
227 |
atcttcatcagattataaagtctgctcagtcactttctaatgatatttgcagata--ttttgtttcgggtactaattagtcttgttatgatatttcaaat |
324 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35686215 |
atcttcatcagattataaagtccgctcagtcactttctaatgatatttgcagatattttttgtttcgggtactaattagtcttgttatgatatttcaaat |
35686314 |
T |
|
| Q |
325 |
atttgcttactttacatatccttgtgattgttactaatcataaactcttattttagctactcctaggtctcaaatatctccactctgcaaatgttc |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35686315 |
atttgcttactttacatatccttgtgattgttactaatcataaactcttattttagctactcctaggtctcaaatatctccactctgcaaatgttc |
35686410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 29 - 303
Target Start/End: Original strand, 35680756 - 35681033
Alignment:
| Q |
29 |
gatactaatgagaaagttgcaattaagaagattagcaacatctttgataattgtgttgattcaatgagaagtttaagggagatgatgctgcttagaaata |
128 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| || |||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35680756 |
gatactgatgagaaagttgcaattaagaagattagcaatatatttgataattgtattgattcagtgagaactttaagggagatgatgctgcttagaaata |
35680855 |
T |
|
| Q |
129 |
ttcgacatgaaaatgtgatcgttttgaaagat-ttatgatgccggtgcatagaacaagttttaaggatgtctacttggtttatgaactcatggatacaga |
227 |
Q |
| |
|
||||||| || |||||||| | |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35680856 |
ttcgacacgagaatgtgattgctttgaaagatgttatgatgccggtacatagaacaagttttaaggatgtctacttggtttatgaactcatggaaacaga |
35680955 |
T |
|
| Q |
228 |
tcttcatcagattataaagtctgctcagtcactttctaatgatatttgcagatatt--ttgtttcgggtactaattag |
303 |
Q |
| |
|
||||||||| ||||| |||||| ||||| |||||||||||||| ||||| ||||| ||||||| |||||||||||| |
|
|
| T |
35680956 |
tcttcatcaaattatcaagtctactcagccactttctaatgatcattgcaaatatttcttgtttcaggtactaattag |
35681033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 28 - 248
Target Start/End: Complemental strand, 23669696 - 23669475
Alignment:
| Q |
28 |
ggatactaatgagaaagttgcaattaagaagattagcaacatctttgataattgtgttgattcaatgagaagtttaagggagatgatgctgcttagaaat |
127 |
Q |
| |
|
|||||| || |||||||| ||||| ||||||||||||||| | |||||| |||||| |||| || | |||| |||||||||||||| | ||||| || || |
|
|
| T |
23669696 |
ggataccaacgagaaagtggcaatcaagaagattagcaacgtatttgatgattgtggtgatgcactcagaactttaagggagatgaagttgcttcgacat |
23669597 |
T |
|
| Q |
128 |
attcgacatgaaaatgtgatcgttttgaaagat-ttatgatgccggtgcatagaacaagttttaaggatgtctacttggtttatgaactcatggatacag |
226 |
Q |
| |
|
|||| ||||| |||||||| | |||||||| ||||||| || | || ||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
23669596 |
gttcggcatgagaatgtgatttctctgaaagatgttatgataccagaccaaagaacaagttttaaggatgtctacttggtctatgaactcatggataaag |
23669497 |
T |
|
| Q |
227 |
atcttcatcagattataaagtc |
248 |
Q |
| |
|
| ||||||| ||||| ||||| |
|
|
| T |
23669496 |
accttcatcgtattatcaagtc |
23669475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 28 - 248
Target Start/End: Complemental strand, 24041972 - 24041751
Alignment:
| Q |
28 |
ggatactaatgagaaagttgcaattaagaagattagcaacatctttgataattgtgttgattcaatgagaagtttaagggagatgatgctgcttagaaat |
127 |
Q |
| |
|
|||||| || |||||||| ||||| ||||||||||||||| | |||||| |||||| |||| || | |||| |||||||||||||| | ||||| || || |
|
|
| T |
24041972 |
ggataccaacgagaaagtggcaatcaagaagattagcaacgtatttgatgattgtggtgatgcactcagaactttaagggagatgaagttgcttcgacat |
24041873 |
T |
|
| Q |
128 |
attcgacatgaaaatgtgatcgttttgaaagat-ttatgatgccggtgcatagaacaagttttaaggatgtctacttggtttatgaactcatggatacag |
226 |
Q |
| |
|
|||| ||||| |||||||| | |||||||| ||||||| || | || ||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
24041872 |
gttcggcatgagaatgtgatttctctgaaagatgttatgataccagaccaaagaacaagttttaaggatgtctacttggtctatgaactcatggataaag |
24041773 |
T |
|
| Q |
227 |
atcttcatcagattataaagtc |
248 |
Q |
| |
|
| ||||||| ||||| ||||| |
|
|
| T |
24041772 |
accttcatcgtattatcaagtc |
24041751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 28 - 235
Target Start/End: Complemental strand, 23685378 - 23685171
Alignment:
| Q |
28 |
ggatactaatgagaaagttgcaattaagaagattagcaacatctttgataattgtgttgattcaatgagaagtttaagggagatgatgctgcttagaaat |
127 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||||||||| | |||||| |||||| ||| || |||||| |||||||||||||| | |||||||| || |
|
|
| T |
23685378 |
ggataccaatgagaaagtggcaatcaagaagattagcaatgtatttgatgattgtggtgacgcactgagaactttaagggagatgaagttgcttagacat |
23685279 |
T |
|
| Q |
128 |
attcgacatgaaaatgtgatcgttttgaaagat-ttatgatgccggtgcatagaacaagttttaaggatgtctacttggtttatgaactcatggatacag |
226 |
Q |
| |
|
| || ||||| |||||||| | | |||||||| ||||||| |||| || |||||||||||||||||| |||||||||| |||||| ||||||||| || |
|
|
| T |
23685278 |
gt-cggcatgagaatgtgattgctctgaaagatgttatgataccggaccaaagaacaagttttaaggatatctacttggtctatgaattcatggataaag |
23685180 |
T |
|
| Q |
227 |
atcttcatc |
235 |
Q |
| |
|
||||||||| |
|
|
| T |
23685179 |
atcttcatc |
23685171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 28 - 235
Target Start/End: Complemental strand, 24057615 - 24057408
Alignment:
| Q |
28 |
ggatactaatgagaaagttgcaattaagaagattagcaacatctttgataattgtgttgattcaatgagaagtttaagggagatgatgctgcttagaaat |
127 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||||||||| | |||||| |||||| ||| || |||||| |||||||||||||| | |||||||| || |
|
|
| T |
24057615 |
ggataccaatgagaaagtggcaatcaagaagattagcaatgtatttgatgattgtggtgacgcactgagaactttaagggagatgaagttgcttagacat |
24057516 |
T |
|
| Q |
128 |
attcgacatgaaaatgtgatcgttttgaaagat-ttatgatgccggtgcatagaacaagttttaaggatgtctacttggtttatgaactcatggatacag |
226 |
Q |
| |
|
| || ||||| |||||||| | | |||||||| ||||||| |||| || |||||||||||||||||| |||||||||| |||||| ||||||||| || |
|
|
| T |
24057515 |
gt-cggcatgagaatgtgattgctctgaaagatgttatgataccggaccaaagaacaagttttaaggatatctacttggtctatgaattcatggataaag |
24057417 |
T |
|
| Q |
227 |
atcttcatc |
235 |
Q |
| |
|
||||||||| |
|
|
| T |
24057416 |
atcttcatc |
24057408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 321 - 416
Target Start/End: Complemental strand, 23669268 - 23669175
Alignment:
| Q |
321 |
aaatatttgcttactttacatatccttgtgattgttactaatcataaactcttattttagctactcctaggtctcaaatatctccactctgcaaat |
416 |
Q |
| |
|
||||||||||||| || |||||||||||| |||||||||||||||||||||||||| || |||| | |||||| || |||||||| ||||||||| |
|
|
| T |
23669268 |
aaatatttgcttatttaacatatccttgt--ttgttactaatcataaactcttatttcagttacttcaaggtcttaattatctccattctgcaaat |
23669175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 321 - 416
Target Start/End: Complemental strand, 24041544 - 24041451
Alignment:
| Q |
321 |
aaatatttgcttactttacatatccttgtgattgttactaatcataaactcttattttagctactcctaggtctcaaatatctccactctgcaaat |
416 |
Q |
| |
|
||||||||||||| || |||||||||||| |||||||||||||||||||||||||| || |||| | |||||| || |||||||| ||||||||| |
|
|
| T |
24041544 |
aaatatttgcttatttaacatatccttgt--ttgttactaatcataaactcttatttcagttacttcaaggtcttaattatctccattctgcaaat |
24041451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 35 - 224
Target Start/End: Complemental strand, 23674420 - 23674227
Alignment:
| Q |
35 |
aatgagaaagttgcaattaagaagattagcaacatctttgataattgtgttgattcaatgagaagtttaagggagatgatgctgcttagaaatattcgac |
134 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| | |||||||||| ||||| || | |||| |||| ||||||||| ||| |||||| || |||| | |
|
|
| T |
23674420 |
aatgagaaagtcgcaatgaagaagattagcaatgtatttgataatttgattgatgcactaagaactttatgggagatgaagcttcttagacatgttcggc |
23674321 |
T |
|
| Q |
135 |
atgaaaatgtgatcgttttgaaagat-ttatgatgccggtgcatagaacaa---gttttaaggatgtctacttggtttatgaactcatggatac |
224 |
Q |
| |
|
| || ||||||||| |||||||||| ||||||| | | || | ||||| |||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
23674320 |
acgagaatgtgatcactttgaaagatgttatgatactagatcaaaaaacaacatgttttaaggatgtctacttggtctatgaactaatggatac |
23674227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 35 - 224
Target Start/End: Complemental strand, 24046696 - 24046503
Alignment:
| Q |
35 |
aatgagaaagttgcaattaagaagattagcaacatctttgataattgtgttgattcaatgagaagtttaagggagatgatgctgcttagaaatattcgac |
134 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| | |||||||||| ||||| || | |||| |||| ||||||||| ||| |||||| || |||| | |
|
|
| T |
24046696 |
aatgagaaagtcgcaatgaagaagattagcaatgtatttgataatttgattgatgcactaagaactttatgggagatgaagcttcttagacatgttcggc |
24046597 |
T |
|
| Q |
135 |
atgaaaatgtgatcgttttgaaagat-ttatgatgccggtgcatagaacaa---gttttaaggatgtctacttggtttatgaactcatggatac |
224 |
Q |
| |
|
| || ||||||||| |||||||||| ||||||| | | || | ||||| |||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
24046596 |
acgagaatgtgatcactttgaaagatgttatgatactagatcaaaaaacaacatgttttaaggatgtctacttggtctatgaactaatggatac |
24046503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 270
Target Start/End: Original strand, 52548627 - 52548711
Alignment:
| Q |
186 |
ttttaaggatgtctacttggtttatgaactcatggatacagatcttcatcagattataaagtctgctcagtcactttctaatgat |
270 |
Q |
| |
|
|||||||||||| || | ||||||||||||||||| || ||| | ||||||||||| |||||| | || |||||||||||||| |
|
|
| T |
52548627 |
ttttaaggatgtttatcttgtttatgaactcatggacaccgatttgcatcagattattaagtcttcccaagcactttctaatgat |
52548711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1428 times since January 2019
Visitors: 1420