View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0117_low_11 (Length: 412)
Name: NF0117_low_11
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 10 - 380
Target Start/End: Original strand, 3069908 - 3070278
Alignment:
| Q |
10 |
caatgcctcattgtcaccctcaaccaatgcacctaaagcaccatatttgtagcaatcataagcccaatcagttaagatagctttgtcttcatcttcttca |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3069908 |
caatgcctcattgtcaccctcaaccaatgcacctaaagcaccatatttgtagcaatcataagcccaatcagttaagatagctttgtcttcatcttcttca |
3070007 |
T |
|
| Q |
110 |
tccatttcttcaacacattttctacatgaaattatctcaagtagcactacaccataactatacacatccaccttagctgtgataggcatgtttttaaacc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3070008 |
tccatttcttcaacacattttctacatgaaattatctcaagtagcactacaccataactatacacatcaaccttagctgtgataggcatgtttttaaacc |
3070107 |
T |
|
| Q |
210 |
attcaagtgcaacatacccttttgttccccttatgccagtgttggttttgctttgattcatgttcaacagctttgctaatccaaaatcagaaattcttgc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3070108 |
attcaagtgcaacatacccttttgttcctcttatgccagtgttggttttgctttgattcatgttcaacagctttgctaatccaaaatcagaaattcttgc |
3070207 |
T |
|
| Q |
310 |
attgaagtaatcatcaaggagtatgttctgaggctttatgtcacaatggatgatcctagtgatgcactctt |
380 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3070208 |
attgaagtaatcatcaaggagtatgttctgaggctttatgtcacaatggatgatcctagtgatgcactctt |
3070278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 10 - 380
Target Start/End: Complemental strand, 3036136 - 3035766
Alignment:
| Q |
10 |
caatgcctcattgtcaccctcaaccaatgcacctaaagcaccatatttgtagcaatcataagcccaatcagttaagatagctttgtcttcatcttcttca |
109 |
Q |
| |
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|||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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|
| T |
3036136 |
caatgcttcattgtcaccctcaaccaatgcatctaaagcaccatcattgtagcaatcataagcccaatcagttaaaattgctttgtcttcatcttcttca |
3036037 |
T |
|
| Q |
110 |
tccatttcttcaacacattttctacatgaaattatctcaagtagcactacaccataactatacacatccaccttagctgtgataggcatgtttttaaacc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3036036 |
tccatttcttcaacacattttctacatgaaattatctcaagtagcactacaccataactatacacatccaccttagctgtgataggcatgtttttaaacc |
3035937 |
T |
|
| Q |
210 |
attcaagtgcaacatacccttttgttccccttatgccagtgttggttttgctttgattcatgttcaacagctttgctaatccaaaatcagaaattcttgc |
309 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
3035936 |
attcaagtgcaacatacccttttattcctcttatgccggtgttggttttgctttgattcatgttcaacaactttgctaatccaaaatcagaaattcttgc |
3035837 |
T |
|
| Q |
310 |
attgaagtaatcatcaaggagtatgttctgaggctttatgtcacaatggatgatcctagtgatgcactctt |
380 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
3035836 |
attgaagtaatcatcaaggagtatgttttgaggctttatgtcacaatgaatgatcctagtgatgcactctt |
3035766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 10 - 380
Target Start/End: Complemental strand, 3057004 - 3056634
Alignment:
| Q |
10 |
caatgcctcattgtcaccctcaaccaatgcacctaaagcaccatatttgtagcaatcataagcccaatcagttaagatagctttgtcttcatcttcttca |
109 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
3057004 |
caatgcttcattgtcaccctcaaccaatgcacataaagcaccatctttgtagcaatcataagcccaatcagttaaaattgctttgtcttcatcttcttca |
3056905 |
T |
|
| Q |
110 |
tccatttcttcaacacattttctacatgaaattatctcaagtagcactacaccataactatacacatccaccttagctgtgataggcatgtttttaaacc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3056904 |
tccatttcttcaacacattttctacatgaaattatctcaagtagcactacaccataactatacacatccaccttagctgtgataggcatgtttttaaacc |
3056805 |
T |
|
| Q |
210 |
attcaagtgcaacatacccttttgttccccttatgccagtgttggttttgctttgattcatgttcaacagctttgctaatccaaaatcagaaattcttgc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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|
| T |
3056804 |
attcaagtgcaacatacccttttgttcctcttatgccagtgttggttttgctttgattcatgttcaacaacttggctaatccaaaatcagaaattcttgc |
3056705 |
T |
|
| Q |
310 |
attgaagtaatcatcaaggagtatgttctgaggctttatgtcacaatggatgatcctagtgatgcactctt |
380 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
3056704 |
attgaaataatcatccaggagtatgttttgaggctttatgtcacaatggataatcctagtgatgcactctt |
3056634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 3048946 - 3049081
Alignment:
| Q |
9 |
tcaatgcctcattgtcaccctcaaccaatgcacctaaagcaccatatttgtagcaatcataagcccaatcagttaagatagctttgtcttcatcttcttc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||| | | ||| | ||| | ||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||| |
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|
| T |
3048946 |
tcaatgcctcattgtcaccctcaaccaagggatctagaataccttctttgtagcagtcataagcccattcagttaagatagctttgtattcattttcttg |
3049045 |
T |
|
| Q |
109 |
atccatttcttcaacacattttctacatgaaattat |
144 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
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| T |
3049046 |
atccatttcttcaacacatcttctacatgaaattat |
3049081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 188 - 355
Target Start/End: Complemental strand, 21457736 - 21457568
Alignment:
| Q |
188 |
gtgataggcatgtttttaaa-ccattcaagtgcaacatacccttttgttccccttatgccagtgttggttttgctttgattcatgttcaacagctttgct |
286 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| || ||||| |||| ||||||||||| |||||||||||| ||| |||||||||||||| |||||| |
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|
| T |
21457736 |
gtgatatgcatgtttttaaaaccattcaagtgaaagataccattttcttccccttatggcagtgttggtttcgctcaaattcatgttcaacaattttgct |
21457637 |
T |
|
| Q |
287 |
aatccaaaatcagaaattcttgcattgaagtaatcatcaaggagtatgttctgaggctttatgtcacaa |
355 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||| |
|
|
| T |
21457636 |
aatccaaagtcagaaattcttgcattgaagtaatcatcaatgggtatgttttgaggctttatgtcacaa |
21457568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 216 - 363
Target Start/End: Complemental strand, 28488189 - 28488042
Alignment:
| Q |
216 |
gtgcaacatacccttttgttccccttatgccagtgttggttttgctttgattcatgttcaacagctttgctaatccaaaatcagaaattcttgcattgaa |
315 |
Q |
| |
|
|||||||||||||||||||||| || || ||||| | || | ||||||||| || ||| ||||||| |||||||||||| ||||| ||||||||| | |
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|
| T |
28488189 |
gtgcaacatacccttttgttcctctaattccagtttcagtgtggctttgattaatcaacaatagctttgataatccaaaatctgaaatccttgcattgta |
28488090 |
T |
|
| Q |
316 |
gtaatcatcaaggagtatgttctgaggctttatgtcacaatggatgat |
363 |
Q |
| |
|
| |||||| || ||||| || || |||||||| |||||||||||||| |
|
|
| T |
28488089 |
ttgatcatctagaagtatattttgtggctttatatcacaatggatgat |
28488042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 216 - 363
Target Start/End: Complemental strand, 28445582 - 28445435
Alignment:
| Q |
216 |
gtgcaacatacccttttgttccccttatgccagtgttggttttgctttgattcatgttcaacagctttgctaatccaaaatcagaaattcttgcattgaa |
315 |
Q |
| |
|
|||||||||| || || ||||| ||||| ||||| | ||| | ||||||||| || ||| | |||||||||||||||||| ||||||||||||||| | |
|
|
| T |
28445582 |
gtgcaacatatcccttagttcctcttattccagtttcggtatggctttgattaatcaacaataactttgctaatccaaaatctgaaattcttgcattgta |
28445483 |
T |
|
| Q |
316 |
gtaatcatcaaggagtatgttctgaggctttatgtcacaatggatgat |
363 |
Q |
| |
|
| |||||| || ||||| || || |||||||| || ||||||||||| |
|
|
| T |
28445482 |
ttgatcatctagaagtatattttgtggctttatatcgcaatggatgat |
28445435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 216 - 363
Target Start/End: Complemental strand, 28466428 - 28466281
Alignment:
| Q |
216 |
gtgcaacatacccttttgttccccttatgccagtgttggttttgctttgattcatgttcaacagctttgctaatccaaaatcagaaattcttgcattgaa |
315 |
Q |
| |
|
|||||||||||||||| ||||| || || ||||| | || | ||||||||| || ||| ||||||| |||||||||||| ||||| ||||||||| | |
|
|
| T |
28466428 |
gtgcaacataccctttggttcctctaattccagtttcagtgtggctttgattaatcaacaatagctttgataatccaaaatctgaaatccttgcattgta |
28466329 |
T |
|
| Q |
316 |
gtaatcatcaaggagtatgttctgaggctttatgtcacaatggatgat |
363 |
Q |
| |
|
| |||||| || ||||| || || |||||||| |||||||||||||| |
|
|
| T |
28466328 |
ttgatcatctagaagtatattttgtggctttatatcacaatggatgat |
28466281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 363
Target Start/End: Complemental strand, 28438068 - 28437986
Alignment:
| Q |
281 |
tttgctaatccaaaatcagaaattcttgcattgaagtaatcatcaaggagtatgttctgaggctttatgtcacaatggatgat |
363 |
Q |
| |
|
|||||||| || ||||| ||||| | |||||| | | |||||| || |||||||| || ||||||||||||||||||||||| |
|
|
| T |
28438068 |
tttgctaaaccgaaatcggaaatcttagcattgtaatcatcatctagaagtatgttttgtggctttatgtcacaatggatgat |
28437986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 84
Target Start/End: Complemental strand, 28445739 - 28445711
Alignment:
| Q |
56 |
ttgtagcaatcataagcccaatcagttaa |
84 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
28445739 |
ttgtagcaatcataagcccaatcagttaa |
28445711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 363
Target Start/End: Complemental strand, 4107504 - 4107428
Alignment:
| Q |
287 |
aatccaaaatcagaaattcttgcattgaagtaatcatcaaggagtatgttctgaggctttatgtcacaatggatgat |
363 |
Q |
| |
|
||||| || |||||||| |||| ||||||| ||||| | |||||| || |||||||||||||||||||| ||||| |
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|
| T |
4107504 |
aatccgaagtcagaaatctttgctgtgaagtactcatctatgagtatattttgaggctttatgtcacaatgaatgat |
4107428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 348
Target Start/End: Complemental strand, 11004968 - 11004904
Alignment:
| Q |
284 |
gctaatccaaaatcagaaattcttgcattgaagtaatcatcaaggagtatgttctgaggctttat |
348 |
Q |
| |
|
||||||||||||||||||| | ||| |||||| | |||||||| || ||||| ||||||||||| |
|
|
| T |
11004968 |
gctaatccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttat |
11004904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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