View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117_low_13 (Length: 407)
Name: NF0117_low_13
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 30 - 383
Target Start/End: Original strand, 9970604 - 9970958
Alignment:
| Q |
30 |
aaaaccaaggcccaatacaagtagtttaagaaaaattagtctaaactacaagaaattcgttaatttctattcaacttcaagcccagcccagttttcacta |
129 |
Q |
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| T |
9970604 |
aaaaccaaggcccaatacaagtagtttaagaaaaattagtctaaactacaagaaattcgttaatttctattcaacttcaagcccagcccagttttcacaa |
9970703 |
T |
|
| Q |
130 |
taatagaagccaaattagtctaaacctgcaaatacgactaataaataattctgttagctttcaaacacatcacgtaactcttcaatcggatattcagaca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9970704 |
taatagaagccaaattagtctaaacctgcaaatacgactaataaataattctgttagctttcaaacacatcacgtaactcttcaatcggatattcagaca |
9970803 |
T |
|
| Q |
230 |
tggttaaaataattaagaaaagtcatcgctcataagtcatttagtgcttattcattctttgttccattagggcctactgggcctcctaggtctccatcag |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9970804 |
tggttaaaataattaagaaaagtcatcgctcataagtcatttagtgcttattcattctttgttccattagggcctactgggcctcctaggtctccatcag |
9970903 |
T |
|
| Q |
330 |
ttaggcatcaata-ttttttcgtagttgcatctgtctcagctgcaatttggtctc |
383 |
Q |
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| T |
9970904 |
ttaggcatcaatatttttttcgtagttgcatctgtctcagctgcaatttggtctc |
9970958 |
T |
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