View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117_low_14 (Length: 406)
Name: NF0117_low_14
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117_low_14 |
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| [»] scaffold0077 (2 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0077 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 50551 - 50848
Alignment:
| Q |
18 |
gaacctgtgttttcttgtagtagccaaaattgtttgaaatggtcctccacgtgatatccacaaacgtatttcttcttctctcaataatgtttcaaccatt |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50551 |
gaacctgtattttcttgtagtagccaaaattgtttgaaatggtcctccacgtgatatccacaaacgtatttcttcttctctcaataatgtttcaaccatt |
50650 |
T |
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| Q |
118 |
caattgttcaatggatttggttaactttaatttcatttaatttttgtgttggaataaatgatagnnnnnnnngttgaggaagaaacaaatgatggttgta |
217 |
Q |
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| T |
50651 |
caattgttcaatggatttggttaactttaatttcgtttgatttttgttttggaataaatgatagttttttctgttgtggaagaaacaaatgatggttgta |
50750 |
T |
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| Q |
218 |
agttgcaattgtttcaaggtttaaactacctgcaattttctttttcttgcaccagttctcattgtataggtattgattttatttcttttgcagcagtt |
315 |
Q |
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| T |
50751 |
agttgcaattgtttcaaggtttaaactacctgcagttttctttttcttgcaccagttctcattgcataggtattgattttattttttttgcagcagtt |
50848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 60299 - 60596
Alignment:
| Q |
18 |
gaacctgtgttttcttgtagtagccaaaattgtttgaaatggtcctccacgtgatatccacaaacgtatttcttcttctctcaataatgtttcaaccatt |
117 |
Q |
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| T |
60299 |
gaacctgtattttcttgtagtagccaaaattgtttgaaatggtcctccacgtgatatccacaaacgtatttcttcttctctcaataatgtttcaaccatt |
60398 |
T |
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| Q |
118 |
caattgttcaatggatttggttaactttaatttcatttaatttttgtgttggaataaatgatagnnnnnnnngttgaggaagaaacaaatgatggttgta |
217 |
Q |
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| T |
60399 |
caattgttcaatggatttggttaactttaatttcgtttgatttttgttttggaataaatgatagttttttctgttgtggaagaaacaaatgatggttgta |
60498 |
T |
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| Q |
218 |
agttgcaattgtttcaaggtttaaactacctgcaattttctttttcttgcaccagttctcattgtataggtattgattttatttcttttgcagcagtt |
315 |
Q |
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| T |
60499 |
agttgcaattgtttcaaggtttaaactacctgcagttttctttttcttgcaccagttctcattgcataggtattgattttattttttttgcagcagtt |
60596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 41929904 - 41929792
Alignment:
| Q |
17 |
agaacctgtgttttcttgtagtagccaaaattgtttgaaatggtcctccacgtgatatccacaaacgtatttcttcttctctcaataatgtttcaaccat |
116 |
Q |
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||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41929904 |
agaacctgtatcttcttgtagtagccaaaattgtttgaactggtcctccacgtgatatccacaaacgtatttcttcttctctcaacaatgtttcaaccat |
41929805 |
T |
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| Q |
117 |
tcaattgttcaat |
129 |
Q |
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||||||||||||| |
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| T |
41929804 |
tcaattgttcaat |
41929792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 121 - 267
Target Start/End: Original strand, 22377363 - 22377512
Alignment:
| Q |
121 |
ttgttcaatggatttggttaactttaatttcatttaatttttgtgttggaataaatgatagnnnnnnnn---gttgaggaagaaacaaatgatggttgta |
217 |
Q |
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||||||||||||||||||| |||||||||| ||| |||||||| || ||||||||||||| |||||||||| |||||| |||||||||| |
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| T |
22377363 |
ttgttcaatggatttggttc-ctttaatttcgtttgatttttgttttagaataaatgatagttttgttttttgttgaggaaggaacaaaggatggttgta |
22377461 |
T |
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| Q |
218 |
agttgcaattgtttcaaggtttaaac-tacctgcaattttctttttcttgc |
267 |
Q |
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| T |
22377462 |
agttgcaattatttcaaggtttaaacgtacctgcagttttctttttcttgc |
22377512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 9368407 - 9368329
Alignment:
| Q |
190 |
gttgaggaagaaacaaatgatggttgtaagttgcaattgtttcaaggtttaaac-tacctgcaattttctttttcttgc |
267 |
Q |
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| T |
9368407 |
gttgaggaaggaataaaggatggttgtaagttgcaattgtttcaaggtttaaacgtacctgcagttttctttttcttgc |
9368329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 9368482 - 9368423
Alignment:
| Q |
121 |
ttgttcaatggatttggttaactttaatttcatttaatttttgtgttggaataaatgatag |
181 |
Q |
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| T |
9368482 |
ttgttcaatgggtttggttct-tttaatttcgtttgatttttgttttggaataaatgatag |
9368423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 209770 - 209854
Alignment:
| Q |
18 |
gaacctgtgttttcttgtagtagccaaaa-ttgtttgaaatggtcctccacgtgatatccacaaacgtatttcttcttctctcaa |
101 |
Q |
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|||||||| | |||||||||||||||||| ||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||||| |
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| T |
209770 |
gaacctgtatcttcttgtagtagccaaaaattgtttgaaatggtcttccacatgatatcgacaaacgtaattcttcttctctcaa |
209854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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