View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117_low_15 (Length: 405)
Name: NF0117_low_15
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 41124204 - 41123823
Alignment:
| Q |
1 |
tatgaaaatgacagatacaaagataaagaaaagttcaatgacataattaaaagggaatcaaaagagttacagttagaagtgaaggcttacctcaataaag |
100 |
Q |
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| T |
41124204 |
tatgaaaatgacagatacaaagataaagaaaagttcaatgacataattaaaagggaatcaaaagagttacagttagaagtgaaggcttacctcaataaag |
41124105 |
T |
|
| Q |
101 |
ttatttatggtatgtttttaatgagttccaaagttaggagtggaatgttattgtattgatgatgataggagaagttgctttcatgaatatatttttaaat |
200 |
Q |
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| T |
41124104 |
ttatttatggtatgtttttaatgagttccaaagttaggagtggaatgttattgtattgatgat---aggagaagttgctttcatgaatatatttttaaat |
41124008 |
T |
|
| Q |
201 |
acaaaaaatgatgtatggtgtatagtataggaagaaggagaggtaattattggattggactttggaggttattgccgtgtattaatgacagactatatag |
300 |
Q |
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| T |
41124007 |
acaaaaaatgatgtatggtgtatagtataggaagaaggagaggtaattattggattggactttggaggttattgccgtgtattaatgaaagactatatag |
41123908 |
T |
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| Q |
301 |
ttggaatttcatttctttatttttgtgtctgctgtattgtatttgaacgtacgtgaagcctccagtaaaataacaacctcaacga |
385 |
Q |
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| T |
41123907 |
ttggaatttcatttctttatttttgtgtctgctgtattgaatttgaatgtaggtgaagcctcaagtaaaataacaacctcaacga |
41123823 |
T |
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