View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117_low_16 (Length: 393)
Name: NF0117_low_16
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 29 - 376
Target Start/End: Original strand, 13269712 - 13270056
Alignment:
| Q |
29 |
attaagctttgtggatttcagtaaaatacatagaaactgtcccctttgttccatggctctttgcaggacctataccttgttttcctctttccccaaaaga |
128 |
Q |
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| T |
13269712 |
attaagctttgtggatttcagtaaaatacatagaaactgtcccctttgttccatggctctttgcaggacctataccttgttttcctctttccccaaaaga |
13269811 |
T |
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| Q |
129 |
ctcaaacccaacttttgttcctcttttggaaggcataaagcaaactactttttcaaccaagaaaaagtatactatactagcattgcatgtaataataaga |
228 |
Q |
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| T |
13269812 |
ctctaacccaacttttgttcctcttttggaaggcataaagcaaactactttttcaaccaagaaaaagtatactatactagcattgcatg---taataaga |
13269908 |
T |
|
| Q |
229 |
gtttgttgatgaatattggagtatactacttaaccttttagtttcatcctatcaagtacggatgcggacttggacaccaagtaagacacgaaaactaaca |
328 |
Q |
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| T |
13269909 |
gtatgttgatgaatattggactatactacttaaacttttagtttcatcctatcaagtacggatacagattcggacatcaagtaagacatgaaaactgaca |
13270008 |
T |
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| Q |
329 |
cgccgacacccataagcatttaagaaaaccacataattcaacattgtc |
376 |
Q |
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| T |
13270009 |
cgccgacatccgtaatcattcaagaaaaccacataattcaacattgtc |
13270056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 369
Target Start/End: Original strand, 13807149 - 13807205
Alignment:
| Q |
313 |
gacacgaaaactaacacgccgacacccataagcatttaagaaaaccacataattcaa |
369 |
Q |
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| T |
13807149 |
gacacgaaaactaacacgccaacactgataacaatttgagaaaatcacataattcaa |
13807205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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