View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0117_low_18 (Length: 384)

Name: NF0117_low_18
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0117_low_18
NF0117_low_18
[»] chr5 (17 HSPs)
chr5 (142-384)||(32927853-32928087)
chr5 (30-79)||(32927818-32927867)
chr5 (281-349)||(11054089-11054157)
chr5 (266-311)||(29845050-29845095)
chr5 (265-312)||(6593171-6593218)
chr5 (274-313)||(10772029-10772068)
chr5 (274-312)||(5559610-5559648)
chr5 (271-305)||(11715018-11715052)
chr5 (269-315)||(38105012-38105058)
chr5 (283-336)||(5390179-5390232)
chr5 (293-349)||(5377299-5377355)
chr5 (269-317)||(26796338-26796386)
chr5 (269-317)||(26799856-26799904)
chr5 (269-317)||(26807406-26807454)
chr5 (317-349)||(36638685-36638717)
chr5 (270-314)||(41059596-41059640)
chr5 (269-317)||(42100195-42100242)
[»] chr1 (18 HSPs)
chr1 (268-344)||(1005137-1005213)
chr1 (273-349)||(34619477-34619553)
chr1 (274-349)||(1725210-1725285)
chr1 (270-349)||(33527246-33527325)
chr1 (270-349)||(36070142-36070221)
chr1 (271-349)||(4700165-4700242)
chr1 (272-349)||(172676-172753)
chr1 (269-314)||(48064184-48064229)
chr1 (266-306)||(1510100-1510140)
chr1 (270-317)||(10744184-10744231)
chr1 (271-317)||(27820487-27820532)
chr1 (281-314)||(6292374-6292407)
chr1 (274-311)||(35925585-35925622)
chr1 (269-305)||(2194486-2194522)
chr1 (274-322)||(4920892-4920940)
chr1 (273-317)||(10280521-10280565)
chr1 (274-306)||(23444782-23444814)
chr1 (301-349)||(45999387-45999435)
[»] chr7 (16 HSPs)
chr7 (269-348)||(6824810-6824888)
chr7 (283-349)||(30535468-30535534)
chr7 (272-314)||(7612337-7612379)
chr7 (272-322)||(31002944-31002994)
chr7 (269-317)||(425968-426016)
chr7 (269-349)||(12110251-12110331)
chr7 (269-312)||(25595981-25596024)
chr7 (269-304)||(40009346-40009381)
chr7 (276-317)||(32156891-32156932)
chr7 (272-349)||(41668209-41668286)
chr7 (272-349)||(41668887-41668964)
chr7 (281-318)||(47302826-47302863)
chr7 (281-313)||(35056975-35057007)
chr7 (270-314)||(35331020-35331064)
chr7 (285-317)||(38600426-38600458)
chr7 (269-317)||(46945770-46945818)
[»] chr8 (11 HSPs)
chr8 (274-343)||(37152995-37153064)
chr8 (270-306)||(31751714-31751750)
chr8 (275-317)||(31916462-31916504)
chr8 (272-349)||(16163377-16163454)
chr8 (265-349)||(33714334-33714419)
chr8 (281-349)||(1929955-1930022)
chr8 (309-349)||(14482133-14482173)
chr8 (309-349)||(26215427-26215467)
chr8 (274-314)||(31118858-31118898)
chr8 (309-349)||(37353347-37353387)
chr8 (272-312)||(43730655-43730695)
[»] chr4 (16 HSPs)
chr4 (266-306)||(19039653-19039693)
chr4 (272-352)||(43824179-43824258)
chr4 (271-317)||(30066913-30066959)
chr4 (266-315)||(47399406-47399455)
chr4 (269-317)||(45214253-45214301)
chr4 (271-306)||(6364021-6364056)
chr4 (274-349)||(23815266-23815341)
chr4 (274-317)||(26883875-26883918)
chr4 (276-343)||(51560392-51560459)
chr4 (273-311)||(54214894-54214932)
chr4 (281-350)||(1408394-1408463)
chr4 (268-313)||(26520380-26520425)
chr4 (281-317)||(9720801-9720837)
chr4 (272-312)||(11877717-11877757)
chr4 (273-349)||(21593110-21593186)
chr4 (269-317)||(47771871-47771919)
[»] chr3 (16 HSPs)
chr3 (281-343)||(33674758-33674820)
chr3 (296-349)||(2128350-2128403)
chr3 (271-348)||(34707547-34707624)
chr3 (273-326)||(37138241-37138294)
chr3 (264-307)||(46434749-46434792)
chr3 (271-317)||(10105721-10105767)
chr3 (272-314)||(30574062-30574104)
chr3 (272-341)||(5430920-5430989)
chr3 (269-350)||(24235781-24235862)
chr3 (272-349)||(44014174-44014251)
chr3 (269-317)||(9995850-9995898)
chr3 (269-317)||(10131536-10131584)
chr3 (269-317)||(10216867-10216915)
chr3 (269-317)||(10220386-10220434)
chr3 (274-306)||(31762206-31762238)
chr3 (269-317)||(48387452-48387500)
[»] chr6 (6 HSPs)
chr6 (264-349)||(9668084-9668169)
chr6 (266-339)||(17241359-17241432)
chr6 (270-318)||(7946019-7946067)
chr6 (273-326)||(20368310-20368363)
chr6 (271-304)||(31776425-31776458)
chr6 (276-320)||(33089374-33089418)
[»] chr2 (8 HSPs)
chr2 (274-327)||(450008-450061)
chr2 (272-316)||(28039464-28039508)
chr2 (266-349)||(7825140-7825223)
chr2 (274-349)||(7936922-7936997)
chr2 (272-311)||(12140444-12140483)
chr2 (271-313)||(40758901-40758943)
chr2 (272-317)||(41880649-41880694)
chr2 (281-317)||(38767655-38767691)


Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 142 - 384
Target Start/End: Original strand, 32927853 - 32928087
Alignment:
Q  142 caaatttcaagcaatatttttagaaattaaaatctgactttgaaatctacaccgatctcaatccaactgtcatcgaagtggtgactggctgactgctaca 241  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||    
T  32927853 caaattttatgcaatatttttagaaattaaaatctgactttgaaatctacaccgatctcaatccaactgtcatcgaagtggtgac--------tgctaca 32927944  T
Q  242 ttgcaggatttcgctatctacctatatggccctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataaca 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32927945 ttgcaggatttcgctatctacctatatggccctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataaca 32928044  T
Q  342 aaagataattattttcacataaatcattttcctaagttatctt 384  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  32928045 aaagataattattttcacataaatcattttcataagttatctt 32928087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 32927818 - 32927867
Alignment:
Q  30 ttcacaccattatttcccgccaattttttcaaattcaaattttatgcaat 79  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32927818 ttcacaccattatttcccgccaattttttaaaattcaaattttatgcaat 32927867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 349
Target Start/End: Original strand, 11054089 - 11054157
Alignment:
Q  281 ataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaaagataa 349  Q
    |||||||||||||||| | ||||||| ||||| |||| ||||||||  ||||||||||| |||||||||    
T  11054089 ataaacaacttaatttccggcttatagcataaacgcttatgtataagctatttctataataaaagataa 11054157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 29845095 - 29845050
Alignment:
Q  266 tatggccctgtttgaataaacaacttaatttgcagcttatatcata 311  Q
    |||||||||||||| ||||||||||||||||||| |||||| ||||    
T  29845095 tatggccctgtttggataaacaacttaatttgcaacttatagcata 29845050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 6593171 - 6593218
Alignment:
Q  265 atatggccctgtttgaataaacaacttaatttgcagcttatatcataa 312  Q
    ||||| ||||||||| |||||||||||||||| ||||||||| |||||    
T  6593171 atatgaccctgtttggataaacaacttaatttacagcttatagcataa 6593218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 313
Target Start/End: Complemental strand, 10772068 - 10772029
Alignment:
Q  274 tgtttgaataaacaacttaatttgcagcttatatcataag 313  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  10772068 tgtttgaatatacaacttaatttgcagcttatagcataag 10772029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 312
Target Start/End: Original strand, 5559610 - 5559648
Alignment:
Q  274 tgtttgaataaacaacttaatttgcagcttatatcataa 312  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  5559610 tgtttggataaacaacttaatttgcagcttatataataa 5559648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 11715052 - 11715018
Alignment:
Q  271 ccctgtttgaataaacaacttaatttgcagcttat 305  Q
    ||||||||| |||||||||||||||||||||||||    
T  11715052 ccctgtttggataaacaacttaatttgcagcttat 11715018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 38105058 - 38105012
Alignment:
Q  269 ggccctgtttgaataaacaacttaatttgcagcttatatcataagcg 315  Q
    ||||||||||| |||||||||||| ||||||||||||| | ||||||    
T  38105058 ggccctgtttggataaacaacttattttgcagcttatagcgtaagcg 38105012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 336
Target Start/End: Complemental strand, 5390232 - 5390179
Alignment:
Q  283 aaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttcta 336  Q
    |||||||||||||||||||||||| ||||| |||  ||| ||||| ||||||||    
T  5390232 aaacaacttaatttgcagcttatagcataaacgcgtatgaataaactatttcta 5390179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 5377355 - 5377299
Alignment:
Q  293 atttgcagcttatatcataagcgctaatgtataaagtatttctataacaaaagataa 349  Q
    |||||||||||||| | |||| ||| ||| ||||| ||||| |||||||||||||||    
T  5377355 atttgcagcttatagcttaagagcttatgcataaactatttatataacaaaagataa 5377299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 26796338 - 26796386
Alignment:
Q  269 ggccctgtttgaataaacaacttaatttgcagcttatatcataagcgct 317  Q
    ||||||||||| |||||||||||| |||||| |||||  ||||||||||    
T  26796338 ggccctgtttggataaacaacttattttgcaccttatcgcataagcgct 26796386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 26799856 - 26799904
Alignment:
Q  269 ggccctgtttgaataaacaacttaatttgcagcttatatcataagcgct 317  Q
    ||||||||||| |||||||||||| |||||| |||||  ||||||||||    
T  26799856 ggccctgtttggataaacaacttattttgcaccttatcgcataagcgct 26799904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 26807406 - 26807454
Alignment:
Q  269 ggccctgtttgaataaacaacttaatttgcagcttatatcataagcgct 317  Q
    ||||||||||| |||||||||||| |||||| |||||  ||||||||||    
T  26807406 ggccctgtttggataaacaacttattttgcaccttatcgcataagcgct 26807454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 349
Target Start/End: Original strand, 36638685 - 36638717
Alignment:
Q  317 taatgtataaagtatttctataacaaaagataa 349  Q
    ||||||||||| |||||||||||||||||||||    
T  36638685 taatgtataaactatttctataacaaaagataa 36638717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 41059596 - 41059640
Alignment:
Q  270 gccctgtttgaataaacaacttaatttgcagcttatatcataagc 314  Q
    ||||||||||  |||||||||||||||| ||||||||| ||||||    
T  41059596 gccctgtttgtctaaacaacttaatttgtagcttatatgataagc 41059640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 42100195 - 42100242
Alignment:
Q  269 ggccctgtttgaataaacaacttaatttgcagcttatatcataagcgct 317  Q
    ||||||||||| ||||| |||||| |||||||||||||||| |||||||    
T  42100195 ggccctgtttggataaataactta-tttgcagcttatatcacaagcgct 42100242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 1005213 - 1005137
Alignment:
Q  268 tggccctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaaa 344  Q
    |||| ||||||| ||||||||| |||||| ||||||||||||||| | || ||||||||| ||||||||||||||||    
T  1005213 tggctctgtttggataaacaacataattttcagcttatatcataaacacttatgtataaactatttctataacaaaa 1005137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 273 - 349
Target Start/End: Complemental strand, 34619553 - 34619477
Alignment:
Q  273 ctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaaagataa 349  Q
    ||||||| ||||||| |||||||||||||||||| |||||  ||| ||||||||   ||||||||||||||||||||    
T  34619553 ctgtttggataaacagcttaatttgcagcttatagcataattgcttatgtataagccatttctataacaaaagataa 34619477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 349
Target Start/End: Complemental strand, 1725285 - 1725210
Alignment:
Q  274 tgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaaagataa 349  Q
    |||||| ||||||||||||||||| |||||||| |||||||    ||||||||| ||||||||||| |||||||||    
T  1725285 tgtttgtataaacaacttaatttggagcttatagcataagcaggtatgtataaactatttctataataaaagataa 1725210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 349
Target Start/End: Complemental strand, 33527325 - 33527246
Alignment:
Q  270 gccctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaaagataa 349  Q
    |||||||||| ||||||| |||| ||||||||||| | |||||||||| ||| ||||  |||||||| ||||||||||||    
T  33527325 gccctgtttggataaacagcttattttgcagcttagagcataagcgcttatgaataagctatttctaaaacaaaagataa 33527246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 349
Target Start/End: Original strand, 36070142 - 36070221
Alignment:
Q  270 gccctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaaagataa 349  Q
    |||||||||| ||||||| | |||||||||||||||| |||||||||| ||||||    ||||| |||||||||||||||    
T  36070142 gccctgtttgtataaacagcctaatttgcagcttatagcataagcgcttatgtatgggctatttttataacaaaagataa 36070221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 271 - 349
Target Start/End: Complemental strand, 4700242 - 4700165
Alignment:
Q  271 ccctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaaagataa 349  Q
    ||||||||| || |||||||||||||||||||| || ||||||| || ||||| ||  |||||||||||||||||||||    
T  4700242 ccctgtttggattaacaacttaatttgcagctttta-cataagcacttatgtacaagctatttctataacaaaagataa 4700165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 349
Target Start/End: Complemental strand, 172753 - 172676
Alignment:
Q  272 cctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaaagataa 349  Q
    |||||||| ||||||| ||||| || || |||||| ||||| | || ||||||||  |||||||||||||||||||||    
T  172753 cctgtttggataaacagcttaaattccaacttataacataaactcttatgtataagctatttctataacaaaagataa 172676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 314
Target Start/End: Original strand, 48064184 - 48064229
Alignment:
Q  269 ggccctgtttgaataaacaacttaatttgcagcttatatcataagc 314  Q
    |||| |||||| |||||||||||||||||||||||||| |||||||    
T  48064184 ggccatgtttggataaacaacttaatttgcagcttatagcataagc 48064229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 1510140 - 1510100
Alignment:
Q  266 tatggccctgtttgaataaacaacttaatttgcagcttata 306  Q
    |||||||||||||| ||||||||||||||||| ||||||||    
T  1510140 tatggccctgtttggataaacaacttaatttgtagcttata 1510100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 317
Target Start/End: Original strand, 10744184 - 10744231
Alignment:
Q  270 gccctgtttgaataaacaacttaatttgcagcttatatcataagcgct 317  Q
    |||||||||| |||||||||||||||  ||||||||| ||||||||||    
T  10744184 gccctgtttgtataaacaacttaattctcagcttatagcataagcgct 10744231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 27820532 - 27820487
Alignment:
Q  271 ccctgtttgaataaacaacttaatttgcagcttatatcataagcgct 317  Q
    ||||||||| |||||||||||| ||||||||||||| ||||||||||    
T  27820532 ccctgtttggataaacaactta-tttgcagcttatagcataagcgct 27820487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 314
Target Start/End: Original strand, 6292374 - 6292407
Alignment:
Q  281 ataaacaacttaatttgcagcttatatcataagc 314  Q
    ||||||||||||||||||||||||||| ||||||    
T  6292374 ataaacaacttaatttgcagcttatattataagc 6292407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 35925585 - 35925622
Alignment:
Q  274 tgtttgaataaacaacttaatttgcagcttatatcata 311  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  35925585 tgtttggataaacaacttaatttgcagcttatgtcata 35925622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 2194522 - 2194486
Alignment:
Q  269 ggccctgtttgaataaacaacttaatttgcagcttat 305  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  2194522 ggccctgtttggataaacagcttaatttgcagcttat 2194486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 4920940 - 4920892
Alignment:
Q  274 tgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgt 322  Q
    |||||| ||||||| |||||||||||||||||| |||||| ||| ||||    
T  4920940 tgtttggataaacagcttaatttgcagcttatagcataagtgcttatgt 4920892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 10280521 - 10280565
Alignment:
Q  273 ctgtttgaataaacaacttaatttgcagcttatatcataagcgct 317  Q
    ||||||| |||||||||||| ||| ||||||||| ||||||||||    
T  10280521 ctgtttggataaacaacttagtttacagcttatagcataagcgct 10280565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 306
Target Start/End: Original strand, 23444782 - 23444814
Alignment:
Q  274 tgtttgaataaacaacttaatttgcagcttata 306  Q
    ||||| |||||||||||||||||||||||||||    
T  23444782 tgtttaaataaacaacttaatttgcagcttata 23444814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 45999435 - 45999387
Alignment:
Q  301 cttatatcataagcgctaatgtataaagtatttctataacaaaagataa 349  Q
    |||||| |||||| ||| ||||||||  |||||||||||||||||||||    
T  45999435 cttatagcataagtgctcatgtataagctatttctataacaaaagataa 45999387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 348
Target Start/End: Original strand, 6824810 - 6824888
Alignment:
Q  269 ggccctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaaagata 348  Q
    ||||||||||| |||||||  |||||||||| |||||| ||||| |||| ||||||||  ||||||||||||||||||||    
T  6824810 ggccctgtttggataaacagtttaatttgcaccttatagcataaacgct-atgtataagctatttctataacaaaagata 6824888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 349
Target Start/End: Original strand, 30535468 - 30535534
Alignment:
Q  283 aaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaaagataa 349  Q
    |||||||||||||||||||||||| ||||||| || | ||||||  || ||||||||||||||||||    
T  30535468 aaacaacttaatttgcagcttatagcataagcacttacgtataagttacttctataacaaaagataa 30535534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 314
Target Start/End: Original strand, 7612337 - 7612379
Alignment:
Q  272 cctgtttgaataaacaacttaatttgcagcttatatcataagc 314  Q
    ||||||| ||||||||||||||||||||||||||| |||||||    
T  7612337 cctgtttcaataaacaacttaatttgcagcttatagcataagc 7612379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 322
Target Start/End: Complemental strand, 31002994 - 31002944
Alignment:
Q  272 cctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgt 322  Q
    |||||||| ||||||||||||||||||| |||||| |||||||||| ||||    
T  31002994 cctgtttggataaacaacttaatttgcatcttatagcataagcgcttatgt 31002944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 426016 - 425968
Alignment:
Q  269 ggccctgtttgaataaacaacttaatttgcagcttatatcataagcgct 317  Q
    ||||||||||| ||||| |||||| ||||||||||||| ||||||||||    
T  426016 ggccctgtttggataaataacttattttgcagcttatagcataagcgct 425968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 349
Target Start/End: Original strand, 12110251 - 12110331
Alignment:
Q  269 ggccctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaaagataa 349  Q
    ||||||||||  ||||||| ||||||||||| |||||| ||||||| || ||| ||||  ||||||||| ||| |||||||    
T  12110251 ggccctgtttcgataaacagcttaatttgcaacttatagcataagcacttatgaataacctatttctattacacaagataa 12110331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 312
Target Start/End: Original strand, 25595981 - 25596024
Alignment:
Q  269 ggccctgtttgaataaacaacttaatttgcagcttatatcataa 312  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||    
T  25595981 ggccctgtttggataaacaacttaacttgcagcttatagcataa 25596024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 304
Target Start/End: Original strand, 40009346 - 40009381
Alignment:
Q  269 ggccctgtttgaataaacaacttaatttgcagctta 304  Q
    |||||||||||||||||||||||||||| |||||||    
T  40009346 ggccctgtttgaataaacaacttaattttcagctta 40009381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 32156891 - 32156932
Alignment:
Q  276 tttgaataaacaacttaatttgcagcttatatcataagcgct 317  Q
    |||| |||||||||||||||||||||||||| ||||| ||||    
T  32156891 tttggataaacaacttaatttgcagcttatagcataaacgct 32156932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 349
Target Start/End: Complemental strand, 41668286 - 41668209
Alignment:
Q  272 cctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaaagataa 349  Q
    |||||||| ||||||| |||| ||||||||  ||| |||||||||| ||| ||||  ||||||||||||  |||||||    
T  41668286 cctgtttggataaacagcttattttgcagccgatagcataagcgcttatgaataagctatttctataacccaagataa 41668209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 349
Target Start/End: Complemental strand, 41668964 - 41668887
Alignment:
Q  272 cctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaaagataa 349  Q
    |||||||| ||||||| |||| ||||||||  ||| |||||||||| ||| ||||  ||||||||||||  |||||||    
T  41668964 cctgtttggataaacagcttattttgcagccgatagcataagcgcttatgaataagctatttctataacccaagataa 41668887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 318
Target Start/End: Original strand, 47302826 - 47302863
Alignment:
Q  281 ataaacaacttaatttgcagcttatatcataagcgcta 318  Q
    ||||||||||||||||||||||| || |||||||||||    
T  47302826 ataaacaacttaatttgcagcttgtagcataagcgcta 47302863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 313
Target Start/End: Complemental strand, 35057007 - 35056975
Alignment:
Q  281 ataaacaacttaatttgcagcttatatcataag 313  Q
    |||||||||||| ||||||||||||||||||||    
T  35057007 ataaacaacttattttgcagcttatatcataag 35056975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 35331020 - 35331064
Alignment:
Q  270 gccctgtttgaataaacaacttaatttgcagcttatatcataagc 314  Q
    |||||||||| | |||||||||||||| ||||||||| |||||||    
T  35331020 gccctgtttggaaaaacaacttaatttacagcttatagcataagc 35331064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 38600458 - 38600426
Alignment:
Q  285 acaacttaatttgcagcttatatcataagcgct 317  Q
    |||||||||||||||||||||| ||||||||||    
T  38600458 acaacttaatttgcagcttatagcataagcgct 38600426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 46945770 - 46945818
Alignment:
Q  269 ggccctgtttgaataaacaacttaatttgcagcttatatcataagcgct 317  Q
    |||| |||||| |||||||||||| ||||||||||||| | ||||||||    
T  46945770 ggccttgtttggataaacaacttagtttgcagcttatagcttaagcgct 46945818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 37153064 - 37152995
Alignment:
Q  274 tgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaa 343  Q
    |||||| || |||||||||||||||| ||||||  ||||||||| ||||||||  |||||||||||||||    
T  37153064 tgtttggattaacaacttaatttgcaacttataggataagcgcttatgtataatatatttctataacaaa 37152995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 306
Target Start/End: Complemental strand, 31751750 - 31751714
Alignment:
Q  270 gccctgtttgaataaacaacttaatttgcagcttata 306  Q
    |||||||||| ||||||||||||||||||||||||||    
T  31751750 gccctgtttggataaacaacttaatttgcagcttata 31751714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 31916462 - 31916504
Alignment:
Q  275 gtttgaataaacaacttaatttgcagcttatatcataagcgct 317  Q
    ||||||||||||||||| |||||||||||||  ||||||||||    
T  31916462 gtttgaataaacaacttcatttgcagcttatggcataagcgct 31916504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 349
Target Start/End: Complemental strand, 16163454 - 16163377
Alignment:
Q  272 cctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaaagataa 349  Q
    |||||||| |||||  ||||| |||||||| |||| ||||| | || ||||||||  |||||||||||| ||||||||    
T  16163454 cctgtttggataaatgacttattttgcagcctatagcataaccacttatgtataagctatttctataactaaagataa 16163377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 349
Target Start/End: Complemental strand, 33714419 - 33714334
Alignment:
Q  265 atatggccctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagta-tttctataacaaaagataa 349  Q
    ||||| |||| |||| |||||||||||| ||||||||||| |  | |||| || ||| |||||||| ||||||||||| |||||||    
T  33714419 atatgaccctatttggataaacaacttattttgcagcttacacaaaaagcacttatgaataaagtattttctataacacaagataa 33714334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 349
Target Start/End: Original strand, 1929955 - 1930022
Alignment:
Q  281 ataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaaagataa 349  Q
    |||||||||||| || |||||||||| || ||||||| ||||||||  ||||||||||  |||||||||    
T  1929955 ataaacaacttactt-gcagcttatagcacaagcgcttatgtataagttatttctatagaaaaagataa 1930022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 14482133 - 14482173
Alignment:
Q  309 ataagcgctaatgtataaagtatttctataacaaaagataa 349  Q
    ||||| ||| ||||||||| |||||||||||||||||||||    
T  14482133 ataagtgcttatgtataaactatttctataacaaaagataa 14482173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 26215427 - 26215467
Alignment:
Q  309 ataagcgctaatgtataaagtatttctataacaaaagataa 349  Q
    ||||||||| ||||||||  |||||||||||||||||||||    
T  26215427 ataagcgcttatgtataagctatttctataacaaaagataa 26215467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 31118898 - 31118858
Alignment:
Q  274 tgtttgaataaacaacttaatttgcagcttatatcataagc 314  Q
    |||||| |||||||||||||| ||||||||||| |||||||    
T  31118898 tgtttggataaacaacttaatgtgcagcttatagcataagc 31118858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 37353387 - 37353347
Alignment:
Q  309 ataagcgctaatgtataaagtatttctataacaaaagataa 349  Q
    ||||||||| ||||| ||| |||||||||||||||||||||    
T  37353387 ataagcgcttatgtacaaactatttctataacaaaagataa 37353347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 43730655 - 43730695
Alignment:
Q  272 cctgtttgaataaacaacttaatttgcagcttatatcataa 312  Q
    |||| ||||||||||||||||||||||||||| || |||||    
T  43730655 cctgattgaataaacaacttaatttgcagcttttagcataa 43730695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 19039653 - 19039693
Alignment:
Q  266 tatggccctgtttgaataaacaacttaatttgcagcttata 306  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  19039653 tatggccctgtttggataaacaacttaatttgcagcttata 19039693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 352
Target Start/End: Original strand, 43824179 - 43824258
Alignment:
Q  272 cctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaaagataatta 352  Q
    ||||||||  ||||||||||||||||||||||||| ||||| |||| || |||||  ||||||| || |||||||||||||    
T  43824179 cctgtttgtttaaacaacttaatttgcagcttatagcataaccgcttat-tataagctatttctttagcaaaagataatta 43824258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 30066959 - 30066913
Alignment:
Q  271 ccctgtttgaataaacaacttaatttgcagcttatatcataagcgct 317  Q
    ||||||||| |||||||| ||||||||||||||||| ||||||||||    
T  30066959 ccctgtttgcataaacaatttaatttgcagcttatagcataagcgct 30066913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 47399406 - 47399455
Alignment:
Q  266 tatggccctgtttgaataaacaacttaatttgcagcttatatcataagcg 315  Q
    |||||||||||||| |||||||||||| |||||||||||||  |||||||    
T  47399406 tatggccctgtttggataaacaacttagtttgcagcttataggataagcg 47399455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 45214253 - 45214301
Alignment:
Q  269 ggccctgtttgaataaacaacttaatttgcagcttatatcataagcgct 317  Q
    |||| ||||||||||||||||||||||||| ||||| | ||||||||||    
T  45214253 ggccatgtttgaataaacaacttaatttgcggcttaaagcataagcgct 45214301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 306
Target Start/End: Original strand, 6364021 - 6364056
Alignment:
Q  271 ccctgtttgaataaacaacttaatttgcagcttata 306  Q
    |||||||||||||||||||||||||| |||||||||    
T  6364021 ccctgtttgaataaacaacttaattttcagcttata 6364056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 349
Target Start/End: Original strand, 23815266 - 23815341
Alignment:
Q  274 tgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaaagataa 349  Q
    |||||| ||||||||||| |||  ||| ||||| |||||  |||||||| |||  |||||||||||||||||||||    
T  23815266 tgtttggataaacaacttcattatcagtttatagcataaatgctaatgtttaagttatttctataacaaaagataa 23815341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 317
Target Start/End: Original strand, 26883875 - 26883918
Alignment:
Q  274 tgtttgaataaacaacttaatttgcagcttatatcataagcgct 317  Q
    |||||| ||||||||||||||||||||| |||| ||||||||||    
T  26883875 tgtttgtataaacaacttaatttgcagcatatagcataagcgct 26883918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 343
Target Start/End: Complemental strand, 51560459 - 51560392
Alignment:
Q  276 tttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaa 343  Q
    |||| |||||||||||||||| ||||||||  |||||||||| |||||| |  ||||| |||||||||    
T  51560459 tttggataaacaacttaatttacagcttattgcataagcgcttatgtatgacctatttgtataacaaa 51560392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 311
Target Start/End: Original strand, 54214894 - 54214932
Alignment:
Q  273 ctgtttgaataaacaacttaatttgcagcttatatcata 311  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  54214894 ctgtttggataaacaacttaatttgcagcttatagcata 54214932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 1408463 - 1408394
Alignment:
Q  281 ataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaaagataat 350  Q
    ||||||| ||| |||||||||||||| ||||| |||| | ||||||  | |||||||||||| |||||||    
T  1408463 ataaacagcttgatttgcagcttatagcataaacgcttacgtataacctgtttctataacaatagataat 1408394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 26520425 - 26520380
Alignment:
Q  268 tggccctgtttgaataaacaacttaatttgcagcttatatcataag 313  Q
    |||||||||||| |||||||||||||||||| |||| || ||||||    
T  26520425 tggccctgtttggataaacaacttaatttgctgcttctagcataag 26520380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 9720837 - 9720801
Alignment:
Q  281 ataaacaacttaatttgcagcttatatcataagcgct 317  Q
    |||||||| | ||||||||||||||||||||||||||    
T  9720837 ataaacaattaaatttgcagcttatatcataagcgct 9720801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 11877717 - 11877757
Alignment:
Q  272 cctgtttgaataaacaacttaatttgcagcttatatcataa 312  Q
    ||||||||||||||||||||| ||||||| ||||| |||||    
T  11877717 cctgtttgaataaacaacttattttgcagattatagcataa 11877757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 349
Target Start/End: Complemental strand, 21593186 - 21593110
Alignment:
Q  273 ctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaaagataa 349  Q
    ||||||| |||| ||||| |||| |  ||||||| | |||| ||| ||||||||| |||||||||||| ||||||||    
T  21593186 ctgtttggataagcaactgaattaggtgcttatagcgtaagtgcttatgtataaactatttctataactaaagataa 21593110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 47771871 - 47771919
Alignment:
Q  269 ggccctgtttgaataaacaacttaatttgcagcttatatcataagcgct 317  Q
    ||||||||||| ||||||| |||| |||| |||||||| ||||||||||    
T  47771871 ggccctgtttggataaacagcttattttggagcttatagcataagcgct 47771919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 343
Target Start/End: Complemental strand, 33674820 - 33674758
Alignment:
Q  281 ataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaa 343  Q
    ||||||| ||||||||||||| |||| |||||||||| || |||||  |||||||||||||||    
T  33674820 ataaacagcttaatttgcagcctatagcataagcgcttatttataagctatttctataacaaa 33674758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 2128403 - 2128350
Alignment:
Q  296 tgcagcttatatcataagcgctaatgtataaagtatttctataacaaaagataa 349  Q
    ||||||||||| |||||||| | ||||||||  |||||||||||||||||||||    
T  2128403 tgcagcttatagcataagcgtttatgtataagctatttctataacaaaagataa 2128350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 34707624 - 34707547
Alignment:
Q  271 ccctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaaagata 348  Q
    |||| |||| |||| |||||||||||  |||||||| |||||||||| | | ||||  ||||||||||||||||||||    
T  34707624 ccctttttggataagcaacttaattttaagcttataacataagcgcttacgcataagctatttctataacaaaagata 34707547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 326
Target Start/End: Original strand, 37138241 - 37138294
Alignment:
Q  273 ctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataa 326  Q
    ||||||| ||||||||||||||||| |||||||| |||||| ||| ||||||||    
T  37138241 ctgtttggataaacaacttaatttgaagcttatagcataagtgcttatgtataa 37138294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 307
Target Start/End: Complemental strand, 46434792 - 46434749
Alignment:
Q  264 tatatggccctgtttgaataaacaacttaatttgcagcttatat 307  Q
    ||||||||| |||||| |||||||||||| ||||||||||||||    
T  46434792 tatatggccttgtttggataaacaacttattttgcagcttatat 46434749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 10105721 - 10105767
Alignment:
Q  271 ccctgtttgaataaacaacttaatttgcagcttatatcataagcgct 317  Q
    ||||||||| |||||||||||| |||||| ||||| |||||||||||    
T  10105721 ccctgtttggataaacaacttattttgcaccttatctcataagcgct 10105767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 30574104 - 30574062
Alignment:
Q  272 cctgtttgaataaacaacttaatttgcagcttatatcataagc 314  Q
    |||||||| ||||||| | ||||||||||||||||||||||||    
T  30574104 cctgtttggataaacaccataatttgcagcttatatcataagc 30574062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 341
Target Start/End: Original strand, 5430920 - 5430989
Alignment:
Q  272 cctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataaca 341  Q
    |||||||| |||| ||||||||||   ||||||||||||||| ||| ||||||||   ||||||||||||    
T  5430920 cctgtttggataagcaacttaattaagagcttatatcataagtgcttatgtataagccatttctataaca 5430989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 350
Target Start/End: Complemental strand, 24235862 - 24235781
Alignment:
Q  269 ggccctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaaagataat 350  Q
    |||| |||||| |||||||||||||||    | ||||| ||||||| ||  |||||||  ||||||||||||||||||||||    
T  24235862 ggccttgtttggataaacaacttaattaagtgtttataacataagcacttgtgtataagttatttctataacaaaagataat 24235781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 349
Target Start/End: Original strand, 44014174 - 44014251
Alignment:
Q  272 cctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaaagataa 349  Q
    |||||||| |||||  ||||| |||||||| |||| ||||| | || ||||||||  |||||||||||| ||||||||    
T  44014174 cctgtttggataaatgacttattttgcagcctatagcataaccacttatgtataagctatttctataactaaagataa 44014251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 9995850 - 9995898
Alignment:
Q  269 ggccctgtttgaataaacaacttaatttgcagcttatatcataagcgct 317  Q
    ||||||||||| |||||||||||| |||||| |||||  ||||||||||    
T  9995850 ggccctgtttggataaacaacttattttgcaccttatcgcataagcgct 9995898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 10131536 - 10131584
Alignment:
Q  269 ggccctgtttgaataaacaacttaatttgcagcttatatcataagcgct 317  Q
    ||||||||||| |||||||||||| |||||| |||||  ||||||||||    
T  10131536 ggccctgtttggataaacaacttattttgcatcttattgcataagcgct 10131584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 10216867 - 10216915
Alignment:
Q  269 ggccctgtttgaataaacaacttaatttgcagcttatatcataagcgct 317  Q
    ||||||||||| |||||||||||| |||||| |||||  ||||||||||    
T  10216867 ggccctgtttggataaacaacttattttgcaccttatcgcataagcgct 10216915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 10220386 - 10220434
Alignment:
Q  269 ggccctgtttgaataaacaacttaatttgcagcttatatcataagcgct 317  Q
    ||||||||||| |||||||||||| |||||| |||||  ||||||||||    
T  10220386 ggccctgtttggataaacaacttattttgcaccttatcgcataagcgct 10220434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 306
Target Start/End: Original strand, 31762206 - 31762238
Alignment:
Q  274 tgtttgaataaacaacttaatttgcagcttata 306  Q
    |||||| ||||||||||||||||||||||||||    
T  31762206 tgtttggataaacaacttaatttgcagcttata 31762238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 48387500 - 48387452
Alignment:
Q  269 ggccctgtttgaataaacaacttaatttgcagcttatatcataagcgct 317  Q
    |||| |||||| |||||||||||| |||||| |||||| ||||||||||    
T  48387500 ggccttgtttggataaacaacttattttgcatcttataacataagcgct 48387452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 349
Target Start/End: Complemental strand, 9668169 - 9668084
Alignment:
Q  264 tatatggccctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaaagataa 349  Q
    |||||||| ||||||| |||||||| ||||||  | ||||||| ||| |||||| || |||||  ||||| |||||||||||||||    
T  9668169 tatatggctctgtttggataaacaatttaattaaccgcttataacatcagcgcttatatataagctatttgtataacaaaagataa 9668084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 339
Target Start/End: Complemental strand, 17241432 - 17241359
Alignment:
Q  266 tatggccctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataa 339  Q
    |||||||||||||| |||| |||| || || |||||||||| |||||||||| ||| ||||  |||||||||||    
T  17241432 tatggccctgtttggataagcaacatatttggcagcttatagcataagcgcttatgcataagctatttctataa 17241359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 7946067 - 7946019
Alignment:
Q  270 gccctgtttgaataaacaacttaatttgcagcttatatcataagcgcta 318  Q
    |||||||||| |||||||||||| |||| |||||||| |||||||||||    
T  7946067 gccctgtttggataaacaacttattttgtagcttatagcataagcgcta 7946019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 326
Target Start/End: Complemental strand, 20368363 - 20368310
Alignment:
Q  273 ctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataa 326  Q
    ||||||| ||||||||||||||| |||||||||| | |||| ||| ||||||||    
T  20368363 ctgtttggataaacaacttaattggcagcttataccctaagtgcttatgtataa 20368310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 31776458 - 31776425
Alignment:
Q  271 ccctgtttgaataaacaacttaatttgcagctta 304  Q
    |||||||||||||||||||||| |||||||||||    
T  31776458 ccctgtttgaataaacaacttattttgcagctta 31776425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 320
Target Start/End: Original strand, 33089374 - 33089418
Alignment:
Q  276 tttgaataaacaacttaatttgcagcttatatcataagcgctaat 320  Q
    |||| ||||||||||||||| ||| |||||| |||||||||||||    
T  33089374 tttggataaacaacttaattagcaacttataccataagcgctaat 33089418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 450061 - 450008
Alignment:
Q  274 tgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaa 327  Q
    |||||| |||||||| |||| |||||||||||| |||||||||| |||||||||    
T  450061 tgtttggataaacaatttaagttgcagcttatagcataagcgcttatgtataaa 450008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 28039508 - 28039464
Alignment:
Q  272 cctgtttgaataaacaacttaatttgcagcttatatcataagcgc 316  Q
    |||||||| |||||||||||||||||||| ||||| |||||||||    
T  28039508 cctgtttggataaacaacttaatttgcagtttatagcataagcgc 28039464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 349
Target Start/End: Original strand, 7825140 - 7825223
Alignment:
Q  266 tatggccctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaaagataa 349  Q
    ||||||| |||||| ||||||| ||||||||| || ||||| |||||| | |  |||||||  ||||| |||||||||||||||    
T  7825140 tatggccatgtttggataaacagcttaatttgaagtttataccataagtgtttctgtataagctatttttataacaaaagataa 7825223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 349
Target Start/End: Original strand, 7936922 - 7936997
Alignment:
Q  274 tgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagtatttctataacaaaagataa 349  Q
    |||||| |||||||||||||||    |||| || |||||| ||| |||||||||  ||||||||||||||||||||    
T  7936922 tgtttggataaacaacttaattaagtgcttttaacataagtgcttatgtataaaccatttctataacaaaagataa 7936997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 272 - 311
Target Start/End: Original strand, 12140444 - 12140483
Alignment:
Q  272 cctgtttgaataaacaacttaatttgcagcttatatcata 311  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  12140444 cctgtttggataaacaacttattttgcagcttatatcata 12140483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 40758901 - 40758943
Alignment:
Q  271 ccctgtttgaataaacaacttaatttgcagcttatatcataag 313  Q
    |||||||||||||| || |||||||||||||||||| ||||||    
T  40758901 ccctgtttgaataaccagcttaatttgcagcttatagcataag 40758943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 41880694 - 41880649
Alignment:
Q  272 cctgtttgaataaacaacttaatttgcagcttatatcataagcgct 317  Q
    |||||||| |||||||||||| ||||||||||||| || |||||||    
T  41880694 cctgtttggataaacaacttactttgcagcttatagcacaagcgct 41880649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 38767691 - 38767655
Alignment:
Q  281 ataaacaacttaatttgcagcttatatcataagcgct 317  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  38767691 ataaacaacttaatttccagcttacatcataagcgct 38767655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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