View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0117_low_2 (Length: 852)
Name: NF0117_low_2
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 664; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 1 - 696
Target Start/End: Original strand, 41122018 - 41122713
Alignment:
| Q |
1 |
aaaccagaaatcttctacaaggctcatcgtttgtttggtgtttccaacatggtgaagatgctaaagactattgatgatgaacatctaaaagatgaagcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41122018 |
aaaccagaaatcttctacaaggctcatcgtttgtttggtgtttccaacatggtgaagatgctaaagaatattgatgatgaacatctaaaagatgaagcaa |
41122117 |
T |
|
| Q |
101 |
tgaaatcaattatttttgagtcggatatgcgtgcaagattccctgctactggatgtctcggtgttattcatatgtacggaggcatgttaaagaagtctgt |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41122118 |
tgaaatcaattatctttgagtcggatatgcgtgcaagattccctgctactggatgtctcggtgttattcatatgtacggaggcatgttaaagaagtctgt |
41122217 |
T |
|
| Q |
201 |
tgatgagttagatcatgtaagaaatctactagcttattgtaaacaacataatctttcttctgcaccttctaatagttctcatttttcaaatactccaatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41122218 |
tgatgagttagatcatgtaagaaatctactagcttattgtaaacaacataatctttcttctgcaccttctactagttctcatttttcaaatactccaatt |
41122317 |
T |
|
| Q |
301 |
ggtgcaaatttgaatacaagttttatggattcaacaaaggaagcacagctgaatggtgacaatggtggtgttgatccacagggaaaaccttaagtgagca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41122318 |
ggtgcaaatttgaatacaagttttatggattcaacaaaggaagcacagctgaatggtgacaatggtggtgttgatccacagggaaaaccttaagtgagca |
41122417 |
T |
|
| Q |
401 |
aattattctatgtttttctggccaattggttaagattacgtgtatcattttatttcaaattcaagaatcaagattattttaattctttaatggtatcttt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41122418 |
aattattctatgtttttctggccaattggttaagatcatgtgtatcattttatttcaaattcaagaatcaagattattttaattctttagtggtatcttt |
41122517 |
T |
|
| Q |
501 |
ctttgttttttggtatattcagctgtatctttctctcagtgtatggtgtatattgcgatataagaaattaaagggaaaccatttttacatcattataagt |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41122518 |
ctttgttttttggtatattcagctgtatctttctctcagtgtatggtgtatattgcgatataagaaattaaagggaaaccattgttacatcattataagt |
41122617 |
T |
|
| Q |
601 |
tgtatagtttagatttggcctcgattttgcaatgccaagttacttgcttatagtgcatgcttacaacgaataaggttgtatgattgtagtagaatt |
696 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41122618 |
tgtatagtttagatttggcctctattttgcaatgccaagttacttgcttatagtgcatgcttacaacgaataaggttgtatgattgtagtagaatt |
41122713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 4e-34; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 325123 - 325009
Alignment:
| Q |
25 |
catcgtttgtttggtgtttccaacatggtgaagatgctaaagactattgatgatgaacatctaaaagatgaagcaatgaaatcaattatttttgagtcgg |
124 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||| |||| ||||||||||||||||| || |||||||||||||| | |
|
|
| T |
325123 |
catcgtttgtttggtatttccaacatggtgaagacgctaaagtctattgatgatgatcatcataaagatgaagcaatgaagtcgattatttttgagtcag |
325024 |
T |
|
| Q |
125 |
atatgcgtgcaagat |
139 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
325023 |
aaatgcgtgcaagat |
325009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 215
Target Start/End: Complemental strand, 3080694 - 3080569
Alignment:
| Q |
90 |
agatgaagcaatgaaatcaattatttttgagtcggatatgcgtgcaagattccctgctactggatgtctcggtgttattcatatgtacggaggcatgtta |
189 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| | || ||||||| ||||| | ||||||||| ||||||||||||||||| | ||| ||| || |
|
|
| T |
3080694 |
agatgaagcaatgaaatcaattattgttgagtcgaaaattcgtgcaaatttcccaattcatggatgtcttggtgttattcatatgtatgcaggtatgata |
3080595 |
T |
|
| Q |
190 |
aagaagtctgttgatgagttagatca |
215 |
Q |
| |
|
|| |||||| | | ||||||||||| |
|
|
| T |
3080594 |
aataagtcttctaaagagttagatca |
3080569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 168
Target Start/End: Complemental strand, 3094017 - 3093939
Alignment:
| Q |
90 |
agatgaagcaatgaaatcaattatttttgagtcggatatgcgtgcaagattccctgctactggatgtctcggtgttatt |
168 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||| |||||||| | ||||||||| | ||||||| |
|
|
| T |
3094017 |
agatgatgcaatgaaatcaattattattgagtcggatatgcgtgctcaattccctgttggtggatgtcttgatgttatt |
3093939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 171
Target Start/End: Original strand, 3104347 - 3104488
Alignment:
| Q |
30 |
tttgtttggtgtttccaacatggtgaagatgctaaagactattgatgatgaacatctaaaagatgaagcaatgaaatcaattatttttgagtcggatatg |
129 |
Q |
| |
|
||||||||||||||||||||| |||||| | ||||||| |||| | || | || ||| || || |||||| | ||||||||||||||||||||||| |
|
|
| T |
3104347 |
tttgtttggtgtttccaacatagtgaagttactaaagaatattaaagacaacgatgtaagagccgatgcaatggattcaattatttttgagtcggatatt |
3104446 |
T |
|
| Q |
130 |
cgtgcaagattccctgctactggatgtctcggtgttattcat |
171 |
Q |
| |
|
|||||| |||||| | | ||||||| | |||||||||||| |
|
|
| T |
3104447 |
cgtgcagaattccccgttcatggatgtgttggtgttattcat |
3104488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 36915077 - 36915318
Alignment:
| Q |
1 |
aaaccagaaatcttctacaaggctcatcgtttgtttggtgtttccaacatggtgaagatgctaaagactattgatgatgaacatctaaaagatgaagcaa |
100 |
Q |
| |
|
|||||| |||| ||| ||| ||||||||||||||||||||||||||||| | ||| ||||| ||| | ||||| ||| |||||||| || | |
|
|
| T |
36915077 |
aaaccaaaaatgttcagcaacgctcatcgtttgtttggtgtttccaacatacaaaggatactaaaagatatcaaggatgatgatcaaaaagatgttgcga |
36915176 |
T |
|
| Q |
101 |
tgaaatcaattatttttgagtcggatatgcgtgcaagattccctgctactggatgtctcggtgttattcatatgtacggaggcatgttaaagaagtctgt |
200 |
Q |
| |
|
||| ||| || ||| ||||||||||||| ||||||| ||| || | | ||||||||| ||||||||| || ||||| ||||||||| ||||| | |
|
|
| T |
36915177 |
tgagatccataattattgagtcggatattcgtgcaaaatttcccgttcatggatgtcttggtgttattatggattatggaggtatgttaaagcagtctat |
36915276 |
T |
|
| Q |
201 |
tgatgagttagatcatgtaagaaatctactagcttattgtaa |
242 |
Q |
| |
|
|| |||||||||||||||| || |||||||||||||||| |
|
|
| T |
36915277 |
ggaagagttagatcatgtaaaaacgttactagcttattgtaa |
36915318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1748 times since January 2019
Visitors: 1427