View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117_low_21 (Length: 366)
Name: NF0117_low_21
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 31 - 361
Target Start/End: Original strand, 1669690 - 1670020
Alignment:
| Q |
31 |
aaagtgtgtttactgtaatacgacatatgttgctgaaggtaatacacatggaaccacaaatctcaataaacactataagaaatgcccaaagaatccaaac |
130 |
Q |
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||||||| |||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1669690 |
aaagtgtatttactgtaatatgacgtatgctgctgaaggtaatacacatggaaccacaaatctcaataaacactataagaaatgccccaagaatccaaac |
1669789 |
T |
|
| Q |
131 |
agggtaattgacagggcacaaaaaacccttgtacttgggaagcacgtagagggtgatagtaatgtttcttttaagcttgttgaatttaatcaattagagt |
230 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1669790 |
agggtaattgacaaggcacaaaaaacccttgtacttgggaagcaagtagagggtgatagtaatgtctcttttaagcttgttgaatttaatcaattagagt |
1669889 |
T |
|
| Q |
231 |
gtagaatggagcttgccaagatgattatcattgatgaacttccctttaaacatgttgaaggtgttggatttaaaggttttatgagtcgtgctcaacctcg |
330 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1669890 |
gtagaatggagcttgctaagatgattatcattgatgaacttccctttaaacatgttgaaggtgttggatttaaaggttttatgagtcgtgctcaacctcg |
1669989 |
T |
|
| Q |
331 |
tttgaaaattcctagtcgtgtctctgctgct |
361 |
Q |
| |
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|||||||||||||||||||||| ||| |||| |
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| T |
1669990 |
tttgaaaattcctagtcgtgtcactgttgct |
1670020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 31 - 361
Target Start/End: Complemental strand, 44272789 - 44272459
Alignment:
| Q |
31 |
aaagtgtgtttactgtaatacgacatatgttgctgaaggtaatacacatggaaccacaaatctcaataaacactataagaaatgcccaaagaatccaaac |
130 |
Q |
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||||||| |||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44272789 |
aaagtgtatttactgtaatatgacgtatgctgctgaaggtaatacacatggaaccacaaatctcaataaacactataagaaatgccccaagaatccaaac |
44272690 |
T |
|
| Q |
131 |
agggtaattgacagggcacaaaaaacccttgtacttgggaagcacgtagagggtgatagtaatgtttcttttaagcttgttgaatttaatcaattagagt |
230 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44272689 |
agggtaattgacaaggcacaaaaaacccttgtacttgggaagcaagtagagggtgatagtaatgtctcttttaagcttgttgaatttaatcaattagagt |
44272590 |
T |
|
| Q |
231 |
gtagaatggagcttgccaagatgattatcattgatgaacttccctttaaacatgttgaaggtgttggatttaaaggttttatgagtcgtgctcaacctcg |
330 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44272589 |
gtagaatggagcttgctaagatgattatcattgatgaacttccctttaaacatgttgaaggtgttggatttaaaggttttatgagtcgtgctcaacctcg |
44272490 |
T |
|
| Q |
331 |
tttgaaaattcctagtcgtgtctctgctgct |
361 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| |
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| T |
44272489 |
tttgaaaattcctagtcgtgtcactgttgct |
44272459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 31 - 361
Target Start/End: Complemental strand, 26074013 - 26073682
Alignment:
| Q |
31 |
aaagtgtgtttactgtaatacgacatatgttgctgaaggtaatacacatggaaccacaaatctcaataaacactataagaaatgcccaaagaatccaaac |
130 |
Q |
| |
|
||||||| |||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26074013 |
aaagtgtatttactgtaatatgacgtatgctgctgaaggtaatacacatggaaccacaaatctcaataaacactataagaaatgccccaagaatccaaac |
26073914 |
T |
|
| Q |
131 |
agggtaattgacagggcacaaaaaa-cccttgtacttgggaagcacgtagagggtgatagtaatgtttcttttaagcttgttgaatttaatcaattagag |
229 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
26073913 |
agggtaattgacaaggcacaaaaaaacccttgtacttgggaagcaagtagagggtgatagtaatgtctcttttaaacttgttgaatttaatcaattagag |
26073814 |
T |
|
| Q |
230 |
tgtagaatggagcttgccaagatgattatcattgatgaacttccctttaaacatgttgaaggtgttggatttaaaggttttatgagtcgtgctcaacctc |
329 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26073813 |
tgtagaatggagcttgctaagatgattatcattgatgaacttccctttaaacatgttgaaggtgttggatttaaaggttttatgagtcgtgctcaacctc |
26073714 |
T |
|
| Q |
330 |
gtttgaaaattcctagtcgtgtctctgctgct |
361 |
Q |
| |
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||||||||||||||||||||||| ||| |||| |
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| T |
26073713 |
gtttgaaaattcctagtcgtgtcactgttgct |
26073682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 20483728 - 20483785
Alignment:
| Q |
232 |
tagaatggagcttgccaagatgattatcattgatgaacttccctttaaacatgttgaa |
289 |
Q |
| |
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|||| |||| ||||| || |||||||| |||||||| ||||| ||||||||||||||| |
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| T |
20483728 |
tagattggaacttgcaaaaatgattattattgatgagcttccttttaaacatgttgaa |
20483785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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