View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117_low_22 (Length: 365)
Name: NF0117_low_22
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 111 - 358
Target Start/End: Complemental strand, 36672905 - 36672658
Alignment:
| Q |
111 |
gaaccctaatcctctactgcagatgtagggactattgcgcggcagtcgtaagaactgttaaggttatgttaccaatttttctcttttctttgaagtcttt |
210 |
Q |
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| T |
36672905 |
gaaccctaatcctctactgctgatgtagggactattgcgcggcagtcgtaagaactgttaaggttatgttaccaatttttctcttttctttgaagtcttt |
36672806 |
T |
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| Q |
211 |
acctatttctaatacctaccatagcgaaaacatttttgaaagctcgattaatatgtttttaaaagtcaaagttacttgattctgcaaaatgcacctaaag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36672805 |
acctatttctaatacctaccatagcgaaaacatttttgaaagctcgattaatatgtttttaaaagtcaaagttacttgattctgcaaaatgcacctaaag |
36672706 |
T |
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| Q |
311 |
aatcaattacatggccatcaagacatgctaataacttagttcatctca |
358 |
Q |
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| T |
36672705 |
aatcaattacatggccatcaagacatgctaattacttatttcatctca |
36672658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 312
Target Start/End: Complemental strand, 36683224 - 36683155
Alignment:
| Q |
243 |
tttttgaaagctcgattaatatgtttttaaaagtcaaagttacttgattctgcaaaatgcacctaaagaa |
312 |
Q |
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| T |
36683224 |
tttttcaaagctcgtttaatatatttttgaaagtcagagttacttacttttgcaaaatgcacctaaagaa |
36683155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 287
Target Start/End: Complemental strand, 56462414 - 56462376
Alignment:
| Q |
249 |
aaagctcgattaatatgtttttaaaagtcaaagttactt |
287 |
Q |
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| T |
56462414 |
aaagctcgattaatatatttttaaaagtcaaagttactt |
56462376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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