View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0117_low_31 (Length: 327)

Name: NF0117_low_31
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0117_low_31
NF0117_low_31
[»] chr3 (5 HSPs)
chr3 (30-134)||(32622219-32622323)
chr3 (247-320)||(32622460-32622533)
chr3 (72-137)||(37073769-37073834)
chr3 (201-238)||(37117853-37117890)
chr3 (69-137)||(11225022-11225090)
[»] chr7 (3 HSPs)
chr7 (64-137)||(22588848-22588921)
chr7 (205-234)||(27473104-27473133)
chr7 (72-137)||(48395353-48395418)
[»] chr5 (3 HSPs)
chr5 (69-137)||(844144-844212)
chr5 (69-130)||(38097899-38097960)
chr5 (207-235)||(41931493-41931521)
[»] chr4 (3 HSPs)
chr4 (69-137)||(961387-961455)
chr4 (69-121)||(2667806-2667858)
chr4 (72-136)||(45652750-45652814)
[»] chr2 (2 HSPs)
chr2 (207-238)||(39377092-39377123)
chr2 (207-239)||(30415008-30415040)
[»] chr1 (1 HSPs)
chr1 (62-137)||(3904293-3904368)
[»] chr6 (1 HSPs)
chr6 (208-241)||(28875081-28875114)
[»] chr8 (1 HSPs)
chr8 (69-137)||(30170624-30170692)


Alignment Details
Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 32622219 - 32622323
Alignment:
Q  30 aatggaaccctctaatcttaggttgtgaaaaatttagacgagtgatatttgtacgattaatatcagataattttgatgataatcacttttcttcttttgt 129  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||| | |||||| |||||||    
T  32622219 aatggaaccctctaatcttaggttgtgaaaaatttagatgagtgatatttgtacaattaatatcagataattttggtgataattatttttctccttttgt 32622318  T
Q  130 gattg 134  Q
    |||||    
T  32622319 gattg 32622323  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 247 - 320
Target Start/End: Original strand, 32622460 - 32622533
Alignment:
Q  247 ggaaaactcagtggccacttgactgaattgagatgcgcaccatgcatgacgcgtccacccacatacctatgcta 320  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32622460 ggaaaacttagtggccacttgactgaattgagatgcgcaccatgcatgacgcgtccacccacatacgtatgcta 32622533  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 37073834 - 37073769
Alignment:
Q  72 tgatatttgtacgattaatatcagataattttgatgataatcacttttcttcttttgtgattggac 137  Q
    |||||||||||| | |||||| ||||||||||| |||| ||||||||||| || |||| |||||||    
T  37073834 tgatatttgtacaactaatattagataattttggtgatcatcacttttctgctcttgttattggac 37073769  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 37117890 - 37117853
Alignment:
Q  201 tgtttcaaaaataattgtataaatatcatttctcaaaa 238  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  37117890 tgtttaaaaaataattgtataaatatcatttcttaaaa 37117853  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 11225022 - 11225090
Alignment:
Q  69 gagtgatatttgtacgattaatatcagataattttgatgataatcacttttcttcttttgtgattggac 137  Q
    ||||||||||||||| ||||| || ||| |||||| |||| |  ||||||||| || ||||||||||||    
T  11225022 gagtgatatttgtaccattaacattagacaattttaatgacagccacttttctcctcttgtgattggac 11225090  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 22588848 - 22588921
Alignment:
Q  64 tagacgagtgatatttgtacgattaatatcagataattttgatgataatcacttttcttcttttgtgattggac 137  Q
    |||| ||||||||||||||| | |||||| ||| || |||| ||| || |||||||||||||||||||||||||    
T  22588848 tagaggagtgatatttgtacaactaatattagacaactttggtgacaaccacttttcttcttttgtgattggac 22588921  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 234
Target Start/End: Complemental strand, 27473133 - 27473104
Alignment:
Q  205 tcaaaaataattgtataaatatcatttctc 234  Q
    ||||||||||||||||||||||||||||||    
T  27473133 tcaaaaataattgtataaatatcatttctc 27473104  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 48395418 - 48395353
Alignment:
Q  72 tgatatttgtacgattaatatcagataattttgatgataatcacttttcttcttttgtgattggac 137  Q
    |||||||||||| | |||||| ||| ||| ||| ||| || |||||||||||||||| ||||||||    
T  48395418 tgatatttgtacaactaatattagacaatcttggtgacaaccacttttcttcttttgagattggac 48395353  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 844212 - 844144
Alignment:
Q  69 gagtgatatttgtacgattaatatcagataattttgatgataatcacttttcttcttttgtgattggac 137  Q
    ||||||||||||||| | |||||| ||| || |||| ||| |||||||||||| |||||||||||||||    
T  844212 gagtgatatttgtacaactaatattagacaactttggtgacaatcacttttctccttttgtgattggac 844144  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 38097960 - 38097899
Alignment:
Q  69 gagtgatatttgtacgattaatatcagataattttgatgataatcacttttcttcttttgtg 130  Q
    |||||||||||||||||||| ||| | |||| |||| ||| || |||||||||||| |||||    
T  38097960 gagtgatatttgtacgattattattatataactttggtgacaaccacttttcttctgttgtg 38097899  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 41931521 - 41931493
Alignment:
Q  207 aaaaataattgtataaatatcatttctca 235  Q
    |||||||||||||||||||||||||||||    
T  41931521 aaaaataattgtataaatatcatttctca 41931493  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 961455 - 961387
Alignment:
Q  69 gagtgatatttgtacgattaatatcagataattttgatgataatcacttttcttcttttgtgattggac 137  Q
    ||||||||||||||| | |||||| | | ||||||| |||||||||||||| | |||||||||||||||    
T  961455 gagtgatatttgtacaactaatattaaacaattttggtgataatcacttttttccttttgtgattggac 961387  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 2667806 - 2667858
Alignment:
Q  69 gagtgatatttgtacgattaatatcagataattttgatgataatcacttttct 121  Q
    ||||||||||||||| |||| | | ||||||||||||||| || |||||||||    
T  2667806 gagtgatatttgtacaattagttttagataattttgatgacaaccacttttct 2667858  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 45652814 - 45652750
Alignment:
Q  72 tgatatttgtacgattaatatcagataattttgatgataatcacttttcttcttttgtgattgga 136  Q
    ||||||||||||   |||||| ||| || ||||||||||| ||||||||||| ||| ||||||||    
T  45652814 tgatatttgtacatctaatattagacaactttgatgataaccacttttcttcctttttgattgga 45652750  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 238
Target Start/End: Complemental strand, 39377123 - 39377092
Alignment:
Q  207 aaaaataattgtataaatatcatttctcaaaa 238  Q
    ||||||||||||||||||||||||||||||||    
T  39377123 aaaaataattgtataaatatcatttctcaaaa 39377092  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 30415040 - 30415008
Alignment:
Q  207 aaaaataattgtataaatatcatttctcaaaat 239  Q
    ||||||||||||| |||||||||||||||||||    
T  30415040 aaaaataattgtacaaatatcatttctcaaaat 30415008  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 3904368 - 3904293
Alignment:
Q  62 tttagacgagtgatatttgtacgattaatatcagataattttgatgataatcacttttcttcttttgtgattggac 137  Q
    |||||| ||||||||||||||| | ||| || ||| ||||||||||| || || |||||| || ||||||||||||    
T  3904368 tttagaggagtgatatttgtacaactaaaattagacaattttgatgacaaccaattttctcctcttgtgattggac 3904293  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 28875114 - 28875081
Alignment:
Q  208 aaaataattgtataaatatcatttctcaaaatta 241  Q
    |||||| |||||||||||||||||||||||||||    
T  28875114 aaaatatttgtataaatatcatttctcaaaatta 28875081  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 30170624 - 30170692
Alignment:
Q  69 gagtgatatttgtacgattaatatcagataattttgatgataatcacttttcttcttttgtgattggac 137  Q
    ||||||||||||||| | |||| | ||| ||||||| ||| || || |||||| |||||||||||||||    
T  30170624 gagtgatatttgtacaactaattttagacaattttggtgacaaccatttttctccttttgtgattggac 30170692  T

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