View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117_low_35 (Length: 280)
Name: NF0117_low_35
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 82; Significance: 9e-39; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 19756240 - 19756112
Alignment:
| Q |
1 |
caccacacatacatcataaatgctatacaatcgttagtgttgatcatattggcaaggattcaacacatacatcataatgaagtaagtttggactcttttg |
100 |
Q |
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| T |
19756240 |
caccacacatacatcataaatgctatacaatccttagtgttgatcatattggcaagaattcaacacatacatcataatgaagtgagttcggattcttttg |
19756141 |
T |
|
| Q |
101 |
atg--atgtccatctcattaatacttgaa |
127 |
Q |
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|| ||| |||||||||||||||||| |
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| T |
19756140 |
ttgatatgagaatctcattaatacttgaa |
19756112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 202 - 268
Target Start/End: Complemental strand, 19756050 - 19755984
Alignment:
| Q |
202 |
agtctgtttccttaggcgtgtaagtacatttgtaaatacactttgagacaattaaccacatgatttt |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
19756050 |
agtctgtttccttaggcgtgtaagtacatttgtaaatacactttgagactattaaccacatgatttt |
19755984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 24133999 - 24133916
Alignment:
| Q |
5 |
acacatacatcataaatgctatacaatcgttagtgttgatcatattggcaaggattcaacacatacatcataatgaagtaagtt |
88 |
Q |
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||||| ||||||| |||| |||| || || | |||||||| |||||||||||||||||||||||||||||||| |||| |||| |
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| T |
24133999 |
acacaaacatcatcaatgttataagattgtcaatgttgatcctattggcaaggattcaacacatacatcataattaagtgagtt |
24133916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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