View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117_low_36 (Length: 276)
Name: NF0117_low_36
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 3683355 - 3683605
Alignment:
| Q |
18 |
tcaagaagaagaagaagacccattagtagtaccacaagcagcaacattactcccattattctcattctcacaaccaccaccagaaccaccgtccacggag |
117 |
Q |
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| T |
3683355 |
tcaagaagaagaagaagacccattagtagtaccacaagcagcaacattactcccattattctcattctcacaaccaccaccagaaccaccgtccacggag |
3683454 |
T |
|
| Q |
118 |
gcgttcacggcggcgctgtcaccattaccattaacatgatctaatgataattttcttcccaaagtgttcttattattatgcatccaaactttgagaacac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3683455 |
gcgttcacggcggcgctgtcaccattaccattaacatgatctaatgataattttcttcccaaagtgttcttattattatgcatccaaactttgagaacac |
3683554 |
T |
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| Q |
218 |
ttctatcaacaccaacttcattgcaaaaaccattcaccatttcttcatctc |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3683555 |
ttctatcaacaccaacttcattgcaaaaaccattcaccatttcttcatctc |
3683605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 2494249 - 2494316
Alignment:
| Q |
178 |
aaagtgttcttattattatgcatccaaactttgagaacacttctatcaacaccaacttcattgcaaaa |
245 |
Q |
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||||||||||| || |||||||||||||| || |||||||| | ||||||||||| |||||| ||||| |
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| T |
2494249 |
aaagtgttcttgttgttatgcatccaaaccttaagaacactacgatcaacaccaatttcattacaaaa |
2494316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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