View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117_low_38 (Length: 264)
Name: NF0117_low_38
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 127 - 253
Target Start/End: Original strand, 41121970 - 41122096
Alignment:
| Q |
127 |
agaaagtgttctccaaattgcgatttagctccttattttccagccgataaaccagaaatcttctacaaggctcatcgtttgtttggtgtttccaacatgg |
226 |
Q |
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| T |
41121970 |
agaaagtgttctccaagttgcgatttagctccttattttccagccgataaaccagaaatcttctacaaggctcatcgtttgtttggtgtttccaacatgg |
41122069 |
T |
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| Q |
227 |
tgaagatgctaaagactattgatgatg |
253 |
Q |
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| T |
41122070 |
tgaagatgctaaagaatattgatgatg |
41122096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 127 - 253
Target Start/End: Complemental strand, 325194 - 325069
Alignment:
| Q |
127 |
agaaagtgttctccaaattgcgatttagctccttattttccagccgataaaccagaaatcttctacaaggctcatcgtttgtttggtgtttccaacatgg |
226 |
Q |
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| T |
325194 |
agaaagtgtactccagattgccctttagctccttattttccagccgataaaccaaaatgcttgc-caatgcacatcgtttgtttggtatttccaacatgg |
325096 |
T |
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| Q |
227 |
tgaagatgctaaagactattgatgatg |
253 |
Q |
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| T |
325095 |
tgaagacgctaaagtctattgatgatg |
325069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 3080808 - 3080734
Alignment:
| Q |
150 |
tttagctccttattttccagccgataaaccagaaatcttctacaaggctcatcgtttgtttggtgtttccaacat |
224 |
Q |
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|||||||||||||||||| |||||| ||||| | || ||| ||| ||||||||||||||||||||||| ||||| |
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| T |
3080808 |
tttagctccttattttccggccgatgaaccaaagatgttcggcaatgctcatcgtttgtttggtgtttcaaacat |
3080734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 3094126 - 3094054
Alignment:
| Q |
152 |
tagctccttattttccagccgataaaccagaaatcttctacaaggctcatcgtttgtttggtgtttccaacat |
224 |
Q |
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|||||||||||||||| || ||||||||| || | ||| ||| |||||||||||||| |||||||||||||| |
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| T |
3094126 |
tagctccttattttcctgctgataaaccacaagtgttcggcaacgctcatcgtttgttcggtgtttccaacat |
3094054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 36915052 - 36915126
Alignment:
| Q |
150 |
tttagctccttattttccagccgataaaccagaaatcttctacaaggctcatcgtttgtttggtgtttccaacat |
224 |
Q |
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||||||||||||||| || |||||||||||| |||| ||| ||| ||||||||||||||||||||||||||||| |
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| T |
36915052 |
tttagctccttatttcccggccgataaaccaaaaatgttcagcaacgctcatcgtttgtttggtgtttccaacat |
36915126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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