View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117_low_42 (Length: 256)
Name: NF0117_low_42
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117_low_42 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 30 - 256
Target Start/End: Complemental strand, 15873576 - 15873350
Alignment:
| Q |
30 |
agatgttcattacaactatgaatgttgctcgttctttagcttcatggattcattggttgacaatgcagaggatgtaaaagagcttagatcagctggtgta |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
15873576 |
agatgttcattacaactatgaatgttgctcgttctttagcttcatggattcattggttgacaatgctgacgatgtaaaagagcttagatcagctggtgta |
15873477 |
T |
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| Q |
130 |
tttcaaaacttgcttgggagcgatgaagaattggcaaaactcttcaatgatttgggtgatgatttgccaacaaaaatgtattgcaacaattcctacacaa |
229 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15873476 |
tttcaaaacttgcttggaagcgacaaagaattggcaaaactcttcaatgatttgggtgatgatttgccaacaaaaatgtattgcaacaattcctacacaa |
15873377 |
T |
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| Q |
230 |
atgcagtagcctatagcaagaaatata |
256 |
Q |
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||||||||||||||||||||||||||| |
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| T |
15873376 |
atgcagtagcctatagcaagaaatata |
15873350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 30 - 256
Target Start/End: Original strand, 15900471 - 15900697
Alignment:
| Q |
30 |
agatgttcattacaactatgaatgttgctcgttctttagcttcatggattcattggttgacaatgcagaggatgtaaaagagcttagatcagctggtgta |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15900471 |
agatgttcattacaactatgaatgttgctcgttctttagcttcatggattcattgattgacaatgcagaggatgtaaaagagcttagatcagctggtgta |
15900570 |
T |
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| Q |
130 |
tttcaaaacttgcttgggagcgatgaagaattggcaaaactcttcaatgatttgggtgatgatttgccaacaaaaatgtattgcaacaattcctacacaa |
229 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||| |
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| T |
15900571 |
tttcaaaacttgcttggaagcgatgaagaattggcaaaactcttcaatgatttgggtgatgatttgccaacaaaaatgtattgccactttgactacacaa |
15900670 |
T |
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| Q |
230 |
atgcagtagcctatagcaagaaatata |
256 |
Q |
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| ||||||||||||||||||||||||| |
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| T |
15900671 |
aagcagtagcctatagcaagaaatata |
15900697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 30 - 256
Target Start/End: Original strand, 15921521 - 15921747
Alignment:
| Q |
30 |
agatgttcattacaactatgaatgttgctcgttctttagcttcatggattcattggttgacaatgcagaggatgtaaaagagcttagatcagctggtgta |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
15921521 |
agatgttcattacaactatgaatgttgctcgttctttagcttcatggattcattgattgacaatgcagaggatgtaaaagagcttagaccagctggtgta |
15921620 |
T |
|
| Q |
130 |
tttcaaaacttgcttgggagcgatgaagaattggcaaaactcttcaatgatttgggtgatgatttgccaacaaaaatgtattgcaacaattcctacacaa |
229 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| |
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| T |
15921621 |
tttcaaaacttgcttgggagcgatgaagatatggcaaaactcttcaatgatttgggtgatgatttgccaacaaaaatgtattgccacattgcctacacaa |
15921720 |
T |
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| Q |
230 |
atgcagtagcctatagcaagaaatata |
256 |
Q |
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| ||||||||||||||||||||||||| |
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| T |
15921721 |
aagcagtagcctatagcaagaaatata |
15921747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 30 - 256
Target Start/End: Complemental strand, 15880387 - 15880161
Alignment:
| Q |
30 |
agatgttcattacaactatgaatgttgctcgttctttagcttcatggattcattggttgacaatgcagaggatgtaaaagagcttagatcagctggtgta |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
15880387 |
agatgttcattacaactatgaatgttgctcgttctttagcttcatggattcattggttgacaatgctgacgatgtaaaagagcttagatcagctggtgta |
15880288 |
T |
|
| Q |
130 |
tttcaaaacttgcttgggagcgatgaagaattggcaaaactcttcaatgatttgggtgatgatttgccaacaaaaatgtattgcaacaattcctacacaa |
229 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | |||||||| |
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| T |
15880287 |
tttcaaaacttgcttggaagcgacaaagaattggcaaaactcttcaatgatttgggtgatgatttgccaataaaaatgtattgccacattgactacacaa |
15880188 |
T |
|
| Q |
230 |
atgcagtagcctatagcaagaaatata |
256 |
Q |
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| ||||||||||||||||||||||||| |
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| T |
15880187 |
aagcagtagcctatagcaagaaatata |
15880161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 31 - 255
Target Start/End: Complemental strand, 14048617 - 14048393
Alignment:
| Q |
31 |
gatgttcattacaactatgaatgttgctcgttctttagcttcatggattcattggttgacaatgcagaggatgtaaaagagcttagatcagctggtgtat |
130 |
Q |
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||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||| || |||||||| || |||||||||| ||||||||||| |
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| T |
14048617 |
gatgttcgctacaactatgaatgttgctcattctttaccttcatggattcattggttgacaacgccgaggatgtgaaggagcttagattagctggtgtat |
14048518 |
T |
|
| Q |
131 |
ttcaaaacttgcttgggagcgatgaagaattggcaaaactcttcaatgatttgggtgatgatttgccaacaaaaatgtattgcaacaattcctacacaaa |
230 |
Q |
| |
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|||||||||||||||| || || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14048517 |
ttcaaaacttgcttggaagtgacgaagaattggcaaagctcttcaatgatttgggtgacgatttgccaacaaaaatgtattgcaacaattcctacacaaa |
14048418 |
T |
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| Q |
231 |
tgcagtagcctatagcaagaaatat |
255 |
Q |
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|||||| || ||||||| ||||||| |
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| T |
14048417 |
tgcagtggcttatagcaggaaatat |
14048393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 30 - 247
Target Start/End: Complemental strand, 14059989 - 14059772
Alignment:
| Q |
30 |
agatgttcattacaactatgaatgttgctcgttctttagcttcatggattcattggttgacaatgcagaggatgtaaaagagcttagatcagctggtgta |
129 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||| || |||||||| || |||||||||| |||||||||| |
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| T |
14059989 |
agatgttcgctacaactacgaatgttgctcgttctttaccttcatggattcattggttgacaacgccgaggatgtgaaggagcttagattagctggtgta |
14059890 |
T |
|
| Q |
130 |
tttcaaaacttgcttgggagcgatgaagaattggcaaaactcttcaatgatttgggtgatgatttgccaacaaaaatgtattgcaacaattcctacacaa |
229 |
Q |
| |
|
||||||||||||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14059889 |
tttcaaaacttgcttggaagtgacgaagaattggcaaaactcttcaatgatttgggtgacgatttgccaacaaaaatgtattgcaacaattcctacacag |
14059790 |
T |
|
| Q |
230 |
atgcagtagcctatagca |
247 |
Q |
| |
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|||| || || ||||||| |
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| T |
14059789 |
atgcggtggcttatagca |
14059772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 15880619 - 15880512
Alignment:
| Q |
73 |
atggattcattggttgacaatgcagaggatgtaaaagagcttagatcagctggtgtatttcaaaacttgcttgggagcgatgaagaattggcaaaactct |
172 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| || ||||||| ||| | |||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15880619 |
atggattcattggttgacactgcagaggatgtaaaggaacttagattagccgatgtacttcaaaacttgcttgggagcgatgaagaattggcaaatctct |
15880520 |
T |
|
| Q |
173 |
tcaatgat |
180 |
Q |
| |
|
|||||||| |
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| T |
15880519 |
tcaatgat |
15880512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 176
Target Start/End: Complemental strand, 44137314 - 44137215
Alignment:
| Q |
77 |
attcattggttgacaatgcagaggatgtaaaagagcttagatcagctggtgtatttcaaaacttgcttgggagcgatgaagaattggcaaaactcttcaa |
176 |
Q |
| |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| || ||| |||||||||||||||| |||||||| |
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| T |
44137314 |
attcattgtttgacaatgcaggggatgtaaaagagcttagatcagctggtgtattttaaaacttgcctgaaagcaatgaagaattggcaaatctcttcaa |
44137215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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