View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117_low_46 (Length: 251)
Name: NF0117_low_46
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6945534 - 6945313
Alignment:
| Q |
1 |
cttatctccggctattggacctcatttcaatttgggcttaacttgacaagtaataaagctatctttcctgtataaaattcaattaaagttgtcaaactct |
100 |
Q |
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| T |
6945534 |
cttatctccggctattggacctcatttcaatttgggcttaacttgacaagtaataaagctatctttcctgtataaaattcaattaaagttgtcaaactct |
6945435 |
T |
|
| Q |
101 |
tgaattaattcttgaactcttacgttttagatcacaaaaaacgagctaatattcatcataacaatacgaatacaagtatcatatatcctttctaatgtaa |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6945434 |
tgaattaattcttgaactcttacgtttcagatcacaaaaaacgagctaatattcatcataacaatacgaatacaaatatcatatatcctttctaatgtaa |
6945335 |
T |
|
| Q |
201 |
ttgttcacaagttagacataat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
6945334 |
ttgttcacaagttagacataat |
6945313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 30024561 - 30024479
Alignment:
| Q |
59 |
ctatctttcctgtataaaattcaattaaagttgtcaaactcttgaattaattcttgaactcttacg-ttttagatcacaaaaa |
140 |
Q |
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||||| ||||| | ||||| ||||||||| |||||||||||| ||||||||| | |||||||||| ||||||| ||||||| |
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| T |
30024561 |
ctatcattcctatgtaaaagtcaattaaaattgtcaaactctcaaattaattcctaaactcttacgactttagataacaaaaa |
30024479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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