View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117_low_47 (Length: 251)
Name: NF0117_low_47
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 6982316 - 6982559
Alignment:
| Q |
1 |
tgcaccatttatagtaattctttctgtctaggatgggaagatttcctgaaaaattaccattgaacgttgaaaccatcgcaacactaaaatggatcgattc |
100 |
Q |
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| T |
6982316 |
tgcaccatttatcgtaattctttccatctaggatgggaagatttcctgaaaaattaccattgaacgttgaaaccatcgcaacactaaaatggatcgattc |
6982415 |
T |
|
| Q |
101 |
ttgaaccaaaactat----ggttactttatacacattacatcaagtgctactcccacttttaattgtttttataactttcaaactaacttgtttgcaatg |
196 |
Q |
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| T |
6982416 |
ttgaaccaaaactatatatggttactttatacacattacatcaagtgctactcccacttttaattgtttttataactttcaaactaacttgtttgcaatg |
6982515 |
T |
|
| Q |
197 |
caagtaaactagtaaactaatctagcataaattaatatcttcat |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6982516 |
caagtaaactagtaaactaatctagcataaattaatatcttcat |
6982559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 42741560 - 42741626
Alignment:
| Q |
154 |
ttttaattgtttttataactttcaaactaacttgtttgcaatgcaagtaaactagtaaactaatcta |
220 |
Q |
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| T |
42741560 |
ttttaactatttttctaactttctaactaacttgcttgcaaagcaagtaaaacactaaactaatcta |
42741626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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