View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0117_low_49 (Length: 232)

Name: NF0117_low_49
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0117_low_49
NF0117_low_49
[»] chr4 (26 HSPs)
chr4 (2-191)||(54823147-54823336)
chr4 (8-191)||(54822416-54822599)
chr4 (2-191)||(31204592-31204779)
chr4 (10-191)||(31205606-31205787)
chr4 (10-191)||(21570321-21570501)
chr4 (35-191)||(21569288-21569444)
chr4 (75-179)||(47243002-47243105)
chr4 (75-191)||(44218990-44219106)
chr4 (75-179)||(47573607-47573710)
chr4 (75-179)||(50497045-50497148)
chr4 (40-151)||(5418157-5418268)
chr4 (75-179)||(43709837-43709940)
chr4 (75-151)||(47243953-47244029)
chr4 (75-175)||(50497935-50498034)
chr4 (33-179)||(42713513-42713658)
chr4 (31-188)||(54372787-54372944)
chr4 (50-151)||(26059723-26059824)
chr4 (75-151)||(43708913-43708989)
chr4 (75-151)||(47572663-47572739)
chr4 (112-175)||(44217627-44217690)
chr4 (101-151)||(5417381-5417431)
chr4 (104-175)||(42698652-42698723)
chr4 (101-151)||(26045209-26045259)
chr4 (4-97)||(17521946-17522040)
chr4 (31-133)||(46425725-46425826)
chr4 (75-121)||(48413526-48413572)
[»] chr1 (13 HSPs)
chr1 (2-191)||(9850007-9850196)
chr1 (17-182)||(18655494-18655659)
chr1 (22-134)||(18656608-18656720)
chr1 (40-188)||(21246403-21246550)
chr1 (75-179)||(43808484-43808587)
chr1 (35-179)||(9822701-9822844)
chr1 (36-151)||(43807512-43807627)
chr1 (75-151)||(30743164-30743240)
chr1 (77-181)||(40779607-40779711)
chr1 (32-188)||(52439204-52439360)
chr1 (31-133)||(40721881-40721982)
chr1 (105-158)||(49784979-49785032)
chr1 (31-179)||(45042659-45042807)
[»] chr8 (21 HSPs)
chr8 (3-191)||(44770504-44770692)
chr8 (5-191)||(43415860-43416046)
chr8 (10-191)||(41767061-41767242)
chr8 (10-159)||(44769749-44769897)
chr8 (10-190)||(41766161-41766341)
chr8 (40-151)||(4534957-4535068)
chr8 (31-179)||(12820017-12820164)
chr8 (10-120)||(43414682-43414792)
chr8 (31-188)||(12818795-12818951)
chr8 (40-188)||(16346140-16346287)
chr8 (75-179)||(9189444-9189547)
chr8 (75-151)||(9190405-9190481)
chr8 (40-179)||(22914118-22914256)
chr8 (75-188)||(4534075-4534187)
chr8 (102-177)||(23768475-23768549)
chr8 (112-191)||(43414419-43414498)
chr8 (75-151)||(22913269-22913345)
chr8 (40-151)||(23767954-23768065)
chr8 (31-190)||(20066116-20066276)
chr8 (31-131)||(35462907-35463007)
chr8 (49-131)||(35462765-35462847)
[»] chr7 (33 HSPs)
chr7 (10-191)||(35045791-35045972)
chr7 (2-191)||(43704341-43704530)
chr7 (2-191)||(36584794-36584983)
chr7 (17-179)||(40321119-40321281)
chr7 (10-191)||(43703091-43703272)
chr7 (8-180)||(42521153-42521325)
chr7 (10-172)||(40322132-40322295)
chr7 (19-190)||(35044658-35044830)
chr7 (10-191)||(42520260-42520440)
chr7 (2-191)||(36583894-36584085)
chr7 (75-188)||(33070646-33070758)
chr7 (35-188)||(23153552-23153705)
chr7 (10-191)||(47536748-47536928)
chr7 (40-179)||(29344214-29344352)
chr7 (56-190)||(47535698-47535832)
chr7 (75-175)||(37783610-37783709)
chr7 (76-151)||(40881168-40881243)
chr7 (75-175)||(29103272-29103374)
chr7 (78-151)||(33071604-33071677)
chr7 (101-179)||(29345068-29345144)
chr7 (75-151)||(47928393-47928469)
chr7 (66-133)||(25742926-25742993)
chr7 (77-188)||(37781998-37782108)
chr7 (101-188)||(47537029-47537115)
chr7 (76-185)||(29658577-29658685)
chr7 (105-190)||(46196895-46196980)
chr7 (145-184)||(32894829-32894868)
chr7 (4-97)||(19218874-19218965)
chr7 (31-97)||(24653585-24653651)
chr7 (107-190)||(16955731-16955814)
chr7 (31-131)||(29409156-29409256)
chr7 (105-133)||(29657085-29657113)
chr7 (75-151)||(47927456-47927532)
[»] chr5 (19 HSPs)
chr5 (10-191)||(8359311-8359492)
chr5 (16-191)||(8358206-8358381)
chr5 (10-191)||(5163698-5163879)
chr5 (10-179)||(38603647-38603816)
chr5 (10-191)||(42962061-42962241)
chr5 (66-190)||(42963168-42963292)
chr5 (29-179)||(39051589-39051738)
chr5 (104-191)||(301398-301485)
chr5 (19-179)||(38602712-38602873)
chr5 (104-190)||(39050727-39050813)
chr5 (75-179)||(39135611-39135714)
chr5 (75-188)||(11907124-11907236)
chr5 (75-151)||(23679224-23679300)
chr5 (75-151)||(23855512-23855588)
chr5 (75-151)||(24071406-24071482)
chr5 (40-188)||(39134708-39134855)
chr5 (75-151)||(4904280-4904356)
chr5 (76-133)||(14357845-14357902)
chr5 (31-97)||(30674748-30674814)
[»] chr3 (29 HSPs)
chr3 (11-191)||(50003121-50003301)
chr3 (10-180)||(21248154-21248324)
chr3 (10-189)||(50002453-50002632)
chr3 (5-190)||(21247275-21247460)
chr3 (17-190)||(55387550-55387723)
chr3 (70-191)||(5409376-5409497)
chr3 (19-179)||(27225483-27225643)
chr3 (40-179)||(33000728-33000866)
chr3 (56-172)||(27226482-27226598)
chr3 (75-179)||(53901619-53901722)
chr3 (75-151)||(39530872-39530948)
chr3 (40-188)||(45730678-45730825)
chr3 (31-151)||(46688484-46688603)
chr3 (75-179)||(50765737-50765840)
chr3 (75-151)||(39531779-39531855)
chr3 (104-179)||(5411230-5411305)
chr3 (76-190)||(5384460-5384574)
chr3 (101-151)||(32999874-32999924)
chr3 (10-188)||(14206677-14206855)
chr3 (10-188)||(14214425-14214603)
chr3 (31-179)||(46690212-46690360)
chr3 (76-148)||(50150801-50150873)
chr3 (101-151)||(2088919-2088969)
chr3 (40-188)||(48336388-48336536)
chr3 (75-179)||(4067976-4068079)
chr3 (75-146)||(53902599-53902670)
chr3 (31-190)||(8895195-8895354)
chr3 (31-97)||(2764004-2764070)
chr3 (75-120)||(1032826-1032871)
[»] chr2 (14 HSPs)
chr2 (2-190)||(10330745-10330932)
chr2 (19-179)||(38593081-38593240)
chr2 (19-179)||(38596677-38596836)
chr2 (19-179)||(38593957-38594113)
chr2 (19-179)||(38597553-38597709)
chr2 (40-173)||(30179480-30179612)
chr2 (10-190)||(370806-370985)
chr2 (35-190)||(371889-372044)
chr2 (40-188)||(39272138-39272285)
chr2 (10-181)||(12364238-12364409)
chr2 (75-179)||(20630634-20630737)
chr2 (75-151)||(30178622-30178698)
chr2 (75-179)||(33553328-33553431)
chr2 (31-133)||(40542331-40542433)
[»] scaffold0013 (3 HSPs)
scaffold0013 (10-189)||(27871-28051)
scaffold0013 (16-173)||(32158-32314)
scaffold0013 (10-173)||(24650-24812)
[»] chr6 (19 HSPs)
chr6 (19-179)||(13561328-13561488)
chr6 (19-190)||(13562202-13562373)
chr6 (40-188)||(1757422-1757569)
chr6 (19-191)||(10673647-10673819)
chr6 (75-179)||(11724259-11724362)
chr6 (19-184)||(24317094-24317256)
chr6 (10-179)||(25437833-25438001)
chr6 (70-190)||(25439064-25439184)
chr6 (75-188)||(1692944-1693056)
chr6 (40-188)||(14174144-14174291)
chr6 (40-188)||(14178680-14178827)
chr6 (40-188)||(27108102-27108249)
chr6 (40-188)||(27149899-27150046)
chr6 (108-191)||(24318059-24318142)
chr6 (76-151)||(27107258-27107333)
chr6 (76-151)||(27149064-27149139)
chr6 (77-152)||(1692150-1692224)
chr6 (31-188)||(682306-682463)
chr6 (139-190)||(18230361-18230412)
[»] scaffold0009 (2 HSPs)
scaffold0009 (75-151)||(204615-204691)
scaffold0009 (40-188)||(205480-205627)
[»] scaffold0041 (1 HSPs)
scaffold0041 (76-151)||(85040-85115)
[»] scaffold0065 (1 HSPs)
scaffold0065 (4-188)||(35404-35588)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 2 - 191
Target Start/End: Original strand, 54823147 - 54823336
Alignment:
Q  2 aagaagatgaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattg 101  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  54823147 aagaagatgaagatgaggaagaaatcaatataaattatgtgttggtaatacatggttagatccaatggacctccattatccaacggtcttctttttattg 54823246  T
Q  102 gatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaattc 191  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||    
T  54823247 gatttaaaattaataaaatatgatcaaattgatgactaaaacaaagataaaggaccattttaaaacgtttaatagttatgggaccaattc 54823336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 8 - 191
Target Start/End: Complemental strand, 54822599 - 54822416
Alignment:
Q  8 atgaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggattta 107  Q
    ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||    
T  54822599 atgaagatgaggaagaaagtaatttaaattatgtgttggtgatacatggttagatccaatggacctcctttatccaacagtcttctttttgttggattta 54822500  T
Q  108 aaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaattc 191  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||||||||  ||||||||||    
T  54822499 aaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttatgggaccaattc 54822416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 191
Target Start/End: Complemental strand, 31204779 - 31204592
Alignment:
Q  2 aagaagatgaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattg 101  Q
    ||||||| ||||| ||||||||  | |||||||||||||||||||| |||||  ||||||||  |||||| | ||||||||||||||||||||||||  |    
T  31204779 aagaagaagaagaagaggaaga--ggaatataaattatgtgttggtgatacactgttagatctgatggacatcctttatccaacggtcttctttttaagg 31204682  T
Q  102 gatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaattc 191  Q
      ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  31204681 agtttaaaattaataaaataggaccaaattgatgattaaaataaagataaatgaccattttgaaacgtttaatagttaggggaccaattc 31204592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 31205606 - 31205787
Alignment:
Q  10 gaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaa 109  Q
    ||||| ||||||||||||| |||||||||||||||||| |||||  ||||||||  ||||| || ||||||||||  ||||||||||||  |  ||||||    
T  31205606 gaagaagaggaagaaagcagtataaattatgtgttggtgatacaccgttagatctgatggatctcctttatccaaatgtcttctttttaaggagtttaaa 31205705  T
Q  110 attaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaattc 191  Q
    |||||||||||| || |||||| || | ||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||    
T  31205706 attaataaaatatgaccaaattaataattaaaacaaagataaaggaccattttgaaacgtttaatagttaggggaccaattc 31205787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 21570321 - 21570501
Alignment:
Q  10 gaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaa 109  Q
    ||||| || |||||||| ||||||| ||| | | |||| ||||| | |||||||  || ||||| |||||||||||||||||||||||    | ||||||    
T  21570321 gaagaagatgaagaaagtaatataa-ttaggcgctggtgatacacgattagatctgatagacctcctttatccaacggtcttctttttgagaggtttaaa 21570419  T
Q  110 attaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaattc 191  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||  || ||||||||||||||||| ||||||||||    
T  21570420 attaataaaataggatcaaattgatgatgaaaacaaagataaatgaccaaattgaaacgtttaatagttaggggaccaattc 21570501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 191
Target Start/End: Complemental strand, 21569444 - 21569288
Alignment:
Q  35 attatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgat 134  Q
    |||| ||||| || |||||  ||||||||  |||||||| |||||||||||||||||||||||    | |||||||||||||||||| ||| |||| |||    
T  21569444 attaggtgttagtgatacactgttagatctgatggacctcctttatccaacggtcttctttttgagaggtttaaaattaataaaatatgattaaatagat 21569345  T
Q  135 gactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaattc 191  Q
    ||  ||||||||||||||||||||  || ||||||||||||||||| ||||||||||    
T  21569344 gatgaaaacaaagataaatgaccaaattgaaacgtttaatagttaggggaccaattc 21569288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 47243105 - 47243002
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaat 174  Q
    |||||||||||||||||||||||   |||||||||||||||||||| ||| ||||| |||||| |||||||||||||| |||||  ||||||| ||||||    
T  47243105 ctttatccaacggtcttcttttttagggatttaaaattaataaaattggaccaaatcgatgacgaaaacaaagataaa-gaccaaattaaaacatttaat 47243007  T
Q  175 agtta 179  Q
    |||||    
T  47243006 agtta 47243002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 75 - 191
Target Start/End: Original strand, 44218990 - 44219106
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaat 174  Q
    |||||| ||||||||||| ||||    | |||||||| |||||||||||| |||||||||||  |||||||||||||| ||||| ||||||  |||||||    
T  44218990 ctttattcaacggtcttcattttgagaggtttaaaatcaataaaataggaccaaattgatgataaaaacaaagataaaggaccaatttaaagtgtttaat 44219089  T
Q  175 agttagaggaccaattc 191  Q
    |||||| ||||||||||    
T  44219090 agttaggggaccaattc 44219106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 47573607 - 47573710
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaat 174  Q
    |||||||||||||||||||||||    |||||||||||||||||||| || ||||| |||||| ||||||||||| || |||||  ||||||||||||||    
T  47573607 ctttatccaacggtcttctttttcagagatttaaaattaataaaatatgaccaaatcgatgacaaaaacaaagat-aaggaccaaattaaaacgtttaat 47573705  T
Q  175 agtta 179  Q
    |||||    
T  47573706 agtta 47573710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 50497148 - 50497045
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaat 174  Q
    |||||||||||||||||||||||   |||||||||||||||||||| ||| ||||| |||||| ||||||||||| || |||||  ||||||| ||||||    
T  50497148 ctttatccaacggtcttcttttttagggatttaaaattaataaaattggaccaaatcgatgacgaaaacaaagat-aaggaccaaattaaaacatttaat 50497050  T
Q  175 agtta 179  Q
    |||||    
T  50497049 agtta 50497045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 5418157 - 5418268
Alignment:
Q  40 gtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgacta 139  Q
    |||||||| ||||| ||||||||   ||| || | |||||||||||||||||||||||  ||||||| ||||||||||||||||| |||||  ||||| |    
T  5418157 gtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggatttcaaattaataaaataggaccaaatcaatgacga 5418256  T
Q  140 aaacaaagataa 151  Q
    ||||||||||||    
T  5418257 aaacaaagataa 5418268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 43709837 - 43709940
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaat 174  Q
    ||||||||||||||||| |||||   |||||||||||||||||||| ||  ||||| |||||| |||||||||||||| |||||  || |||||||||||    
T  43709837 ctttatccaacggtcttgttttttggggatttaaaattaataaaattggtccaaatcgatgacgaaaacaaagataaa-gaccaaattgaaacgtttaat 43709935  T
Q  175 agtta 179  Q
    |||||    
T  43709936 agtta 43709940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 47243953 - 47244029
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataa 151  Q
    |||||||||||||||||||||||   ||||||||||||||||||||| || ||||| |||||| |||||||||||||    
T  47243953 ctttatccaacggtcttcttttttagggatttaaaattaataaaatatgaccaaatcgatgacgaaaacaaagataa 47244029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 50497935 - 50498034
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaat 174  Q
    ||||||||||||||| ||||||| | ||||||||||||||||||||| |  ||||| |||||| ||||||||||| ||||||||  || |||||||||||    
T  50497935 ctttatccaacggtcatctttttttgggatttaaaattaataaaatatggccaaatcgatgacaaaaacaaagat-aatgaccaaattgaaacgtttaat 50498033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 179
Target Start/End: Complemental strand, 42713658 - 42713513
Alignment:
Q  33 aaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattg 132  Q
    |||||| |||||||| ||| |  ||||||| | |||||||| ||||||||||| ||||||||||||   | |||||| |||||||||||| | |||||||    
T  42713658 aaattaggtgttggtgatataccgttagatacgatggacctcctttatccaacagtcttctttttaaaaggtttaaa-ttaataaaatagaaccaaattg 42713560  T
Q  133 atgactaaaacaaagataaatgaccattttaaaacgtttaatagtta 179  Q
    ||| | ||||||||||||||  ||||  || ||||| ||||||||||    
T  42713559 atggcaaaaacaaagataaaaaaccaaattgaaacgcttaatagtta 42713513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 188
Target Start/End: Complemental strand, 54372944 - 54372787
Alignment:
Q  31 ataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaat 130  Q
    |||||| | |||||||| |||||  |||||||| ||| |||||  ||||||||||||||| |||||  | ||  ||||||| |||||||||||| |||||    
T  54372944 ataaatcaggtgttggtgatacacagttagatctaatagacctcatttatccaacggtctccttttcttgggggttaaaatgaataaaataggaccaaat 54372845  T
Q  131 tg-atgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaa 188  Q
    || |||| |  ||  |||||||| ||||| |||  ||||||||||||||||||||||||    
T  54372844 tgaatga-tggaaagaagataaaggaccaatttggaacgtttaatagttagaggaccaa 54372787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 151
Target Start/End: Original strand, 26059723 - 26059824
Alignment:
Q  50 tacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagat 149  Q
    |||||||||||||   ||| || | ||||||||||||||||| |||||   |||||||||||||||||||| ||| ||||| |||||  |||||||||||    
T  26059723 tacatggttagatatgatgaacttcctttatccaacggtcttgttttttagggatttaaaattaataaaattggaccaaatcgatgaagaaaacaaagat 26059822  T
Q  150 aa 151  Q
    ||    
T  26059823 aa 26059824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 43708989 - 43708913
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataa 151  Q
    ||||||||||||||||| |||||   |||||||||||||||||| | ||| ||||| |||||| |||||||||||||    
T  43708989 ctttatccaacggtcttgttttttagggatttaaaattaataaatttggaccaaatcgatgacgaaaacaaagataa 43708913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 47572739 - 47572663
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataa 151  Q
    |||||||||||||||||||||||   |||||||||||||||||||| ||| ||||| ||  || |||||||||||||    
T  47572739 ctttatccaacggtcttcttttttagggatttaaaattaataaaattggaccaaatcgacaacgaaaacaaagataa 47572663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 44217690 - 44217627
Alignment:
Q  112 taataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaata 175  Q
    ||||||||||||| |||||||||||  |||||||||||||| |||||  |||||||||||||||    
T  44217690 taataaaataggaccaaattgatgatgaaaacaaagataaaagaccaaattaaaacgtttaata 44217627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 5417431 - 5417381
Alignment:
Q  101 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataa 151  Q
    ||||||||||||||||||||| || |||||||||||| |||||||||||||    
T  5417431 ggatttaaaattaataaaatatgaccaaattgatgacgaaaacaaagataa 5417381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 175
Target Start/End: Original strand, 42698652 - 42698723
Alignment:
Q  104 tttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaata 175  Q
    |||||||| |||||||| |||  ||||||||||  ||||||||||||||||||||  || ||||||||||||    
T  42698652 tttaaaataaataaaatgggactaaattgatgatgaaaacaaagataaatgaccaaattgaaacgtttaata 42698723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 26045259 - 26045209
Alignment:
Q  101 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataa 151  Q
    |||||||||||||||||||| ||| ||||| |||||| |||||||||||||    
T  26045259 ggatttaaaattaataaaattggaccaaatcgatgacgaaaacaaagataa 26045209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 17522040 - 17521946
Alignment:
Q  4 gaagatgaagatgaggaagaaagcaata-taaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttcttttt 97  Q
    |||||||||||||| |||||||   ||| ||||||| |||||||| |||||  ||||||||  || |||||  ||||||||| ||||||||||||    
T  17522040 gaagatgaagatgatgaagaaaagtataataaattaagtgttggtgatacactgttagatctcatagaccttgtttatccaatggtcttcttttt 17521946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 46425826 - 46425725
Alignment:
Q  31 ataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaat 130  Q
    |||||||| |||||||| ||||| | ||| |||  || ||||| |||||||||||| |||| |||||  |||| ||||||||||| ||| ||||| ||||    
T  46425826 ataaattaggtgttggtgatacacg-ttaaatctgattgacctcctttatccaacgatctttttttttatggagttaaaattaatgaaacaggattaaat 46425728  T
Q  131 tga 133  Q
    |||    
T  46425727 tga 46425725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 48413526 - 48413572
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaata 121  Q
    |||||||||||||||||||||||    ||||||||||||||||||||    
T  48413526 ctttatccaacggtcttcttttttagagatttaaaattaataaaata 48413572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 191
Target Start/End: Complemental strand, 9850196 - 9850007
Alignment:
Q  2 aagaagatgaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattg 101  Q
    ||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||| |||| | |||||||||||||||| |||    
T  9850196 aagaatatgaagatgaggaagaaagtaatttaaattatgtgttggtgatacatggttagatccaattgacctccttttttcaacggtcttctttttgttg 9850097  T
Q  102 gatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaattc 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||||||||  ||||||||||    
T  9850096 gatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttatgggaccaattc 9850007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 18655659 - 18655494
Alignment:
Q  17 aggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaata 116  Q
    ||||||||||| ||||||||||||||||||| |||||   ||||||| ||||||||| ||||||||||||||||||||||||  |  |||||||||||||    
T  18655659 aggaagaaagcgatataaattatgtgttggttatacactattagatctaatggacctcctttatccaacggtcttctttttaaggattttaaaattaata 18655560  T
Q  117 aaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagag 182  Q
    ||| ||||  |||||||| | |||||||||||||||| | |||||| |||||||||||||||||||    
T  18655559 aaaaaggactaaattgatcattaaaacaaagataaataaacattttgaaacgtttaatagttagag 18655494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 18656608 - 18656720
Alignment:
Q  22 gaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaata 121  Q
    |||| ||||||||||||||||||| | |||||| ||||||||| |||||||| ||||||||||| ||||||||||||  |  ||||||||||||||||||    
T  18656608 gaaaacaatataaattatgtgttgatgatacatcgttagatccgatggacctcctttatccaacagtcttctttttaaggagtttaaaattaataaaata 18656707  T
Q  122 ggatcaaattgat 134  Q
    |||||||||||||    
T  18656708 ggatcaaattgat 18656720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 40 - 188
Target Start/End: Original strand, 21246403 - 21246550
Alignment:
Q  40 gtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgacta 139  Q
    |||||||| ||||| ||||||||   ||| || | |||||||||||||||||||||||  ||||||| ||||||||||||||||| ||||| |||||| |    
T  21246403 gtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggattttaaattaataaaataggaccaaatcgatgacga 21246502  T
Q  140 aaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaa 188  Q
    |||||||||| |||||||   || ||||||||||||||||  |||||||    
T  21246503 aaacaaagat-aatgaccgaattgaaacgtttaatagttaagggaccaa 21246550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 43808484 - 43808587
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaat 174  Q
    ||||||| |||||||||||||||   ||||||||||||||||||||| || ||||| |||||| ||||||||||| ||||||||  || |||||||||||    
T  43808484 ctttatctaacggtcttcttttttagggatttaaaattaataaaatatgaccaaatcgatgacgaaaacaaagat-aatgaccaaattgaaacgtttaat 43808582  T
Q  175 agtta 179  Q
    |||||    
T  43808583 agtta 43808587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 179
Target Start/End: Complemental strand, 9822844 - 9822701
Alignment:
Q  35 attatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgat 134  Q
    |||| |||||||  ||||| ||||||||   ||| |||| ||||||||||| |||||||||||   |||||||||||||||||||||| | |||||  ||    
T  9822844 attaggtgttggggatacacggttagatatgatgaacctcctttatccaacagtcttcttttttagggatttaaaattaataaaatagaaccaaatcaat 9822745  T
Q  135 gactaaaacaaagataaatgaccattttaaaacgtttaatagtta 179  Q
    ||| ||||||||||| || |||||  || ||||||||||||||||    
T  9822744 gacgaaaacaaagat-aaggaccaaattgaaacgtttaatagtta 9822701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 36 - 151
Target Start/End: Complemental strand, 43807627 - 43807512
Alignment:
Q  36 ttatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatg 135  Q
    ||||||||||||  |||| ||||||||   ||| || | |||||||||||||||||||||||   |||||||| ||||||||||| ||||||||| ||||    
T  43807627 ttatgtgttggtggtacacggttagatatgatgaacttcctttatccaacggtcttcttttttagggatttaatattaataaaattggatcaaatcgatg 43807528  T
Q  136 actaaaacaaagataa 151  Q
    |  |||||||||||||    
T  43807527 atgaaaacaaagataa 43807512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 30743240 - 30743164
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataa 151  Q
    ||||||||||||||||| |||||   |||||||||||||||||||| ||| ||||| |||||| |||||||||||||    
T  30743240 ctttatccaacggtcttgttttttagggatttaaaattaataaaattggaccaaatcgatgacgaaaacaaagataa 30743164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 181
Target Start/End: Original strand, 40779607 - 40779711
Alignment:
Q  77 ttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatag 176  Q
    |||||||||||||| |||||| | ||  ||||||| |||||||||||| ||| ||||  | | |||  |||||||||||||| ||||||||||||||||     
T  40779607 ttatccaacggtctcctttttttgggggttaaaatgaataaaataggaccaacttgaataatgaaaataagataaatgaccaatttaaaacgtttaataa 40779706  T
Q  177 ttaga 181  Q
    |||||    
T  40779707 ttaga 40779711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 188
Target Start/End: Original strand, 52439204 - 52439360
Alignment:
Q  32 taaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaatt 131  Q
    ||||||| |||||||| |||||  ||||||||  || ||| |  ||||||||||| ||| |||||||| ||  ||||||| |||||||||| | ||||||    
T  52439204 taaattaggtgttggtgatacacagttagatctgatagacttcatttatccaacgatctcctttttatgggtgttaaaatgaataaaatagaaccaaatt 52439303  T
Q  132 g-atgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaa 188  Q
    | |||| |  ||  |||||||| || || ||| |||||||||||||||||||||||||    
T  52439304 gaatga-tggaaagaagataaaggatcaatttgaaacgtttaatagttagaggaccaa 52439360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 40721982 - 40721881
Alignment:
Q  31 ataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaat 130  Q
    |||||||| |||||| | |||||  |||| ||| ||||||||| |||||||||||| ||| |||||||  | | ||||||||||  |||||||| |||||    
T  40721982 ataaattaggtgttgatgatacaccgttaaatctaatggacctcctttatccaacgatctccttttta-ggaagttaaaattaacgaaataggaccaaat 40721884  T
Q  131 tga 133  Q
    |||    
T  40721883 tga 40721881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 49784979 - 49785032
Alignment:
Q  105 ttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgacca 158  Q
    ||||||||| |||||| |||||||||||  ||| |||||||||||||| |||||    
T  49784979 ttaaaattattaaaattggatcaaattgcggacgaaaacaaagataaaggacca 49785032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 179
Target Start/End: Complemental strand, 45042807 - 45042659
Alignment:
Q  31 ataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaat 130  Q
    ||||||||  ||||| | ||||| |||||||||  ||  ||||  ||||||||||||||| |||||||   || |||||||||| |||||| || |||||    
T  45042807 ataaattagatgttgatgatacacggttagatctgatatacctcatttatccaacggtctcctttttaaatgagttaaaattaacaaaatatgaccaaat 45042708  T
Q  131 tgatgactaaaacaaagataaatgaccattttaaaacgtttaatagtta 179  Q
    | |  |  |||||| ||||||| ||||| ||| |||| ||||| |||||    
T  45042707 ttactaacaaaacatagataaaagaccaatttgaaacatttaacagtta 45042659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 3 - 191
Target Start/End: Original strand, 44770504 - 44770692
Alignment:
Q  3 agaagatgaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattgg 102  Q
    |||||||||||| |||||||| || |||||||||||||||| ||| |||||  ||||||||| || |||||  |||||||||||||||||||||||  ||    
T  44770504 agaagatgaagaagaggaagagagaaatataaattatgtgtcggttatacactgttagatccgatagacctcatttatccaacggtcttctttttaaggg 44770603  T
Q  103 atttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaattc 191  Q
     |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||    
T  44770604 gtttaaaattaataaaataggatcaaattgatgactaaaacaaagctaaaggaccattttaaaacatttaatagttagaggaccaattc 44770692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 5 - 191
Target Start/End: Original strand, 43415860 - 43416046
Alignment:
Q  5 aagatgaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggat 104  Q
    |||||||| ||||||||||||||||||||||||| |||||| | |||||  || |||||| ||||| || ||||||||||| ||||||||||||  || |    
T  43415860 aagatgaaaatgaggaagaaagcaatataaattacgtgttgctgatacaccgtaagatccgatggatctcctttatccaacagtcttctttttaaggggt 43415959  T
Q  105 ttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaattc 191  Q
    |||||||||||||||| |||  ||| |||||||||||||||||||||| ||||||||| ||||||||||||||||  ||||||||||    
T  43415960 ttaaaattaataaaatcggactaaaatgatgactaaaacaaagataaaagaccattttgaaacgtttaatagttaagggaccaattc 43416046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 41767061 - 41767242
Alignment:
Q  10 gaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaa 109  Q
    ||||| || ||| ||| ||||||||||||||||||||| |||||  ||||||||| |||||||| ||| ||||||| ||||||||||||   | ||||||    
T  41767061 gaagaagaagaaaaaaccaatataaattatgtgttggtgatacaccgttagatccgatggacctccttaatccaacagtcttctttttaagaggtttaaa 41767160  T
Q  110 attaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaattc 191  Q
    ||||||||||||||| |||| | |||||||||| ||||||||  ||||||||| ||||||||||||||||| ||||||||||    
T  41767161 attaataaaataggaccaaaataatgactaaaataaagataagggaccattttgaaacgtttaatagttaggggaccaattc 41767242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 159
Target Start/End: Complemental strand, 44769897 - 44769749
Alignment:
Q  10 gaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaa 109  Q
    ||||| ||||||||||  |||||||||||||||||||| |||||  |||||||   |||||||| ||| ||||||| |||||| |||||  || ||||||    
T  44769897 gaagaagaggaagaaaataatataaattatgtgttggtgatacactgttagatatgatggacctcctt-atccaacagtcttcattttaagggttttaaa 44769799  T
Q  110 attaataaaataggatcaaattgatgactaaaacaaagataaatgaccat 159  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44769798 attaataaaatatgatcaaattgatgactaaaacaaagataaatgaccat 44769749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 190
Target Start/End: Complemental strand, 41766341 - 41766161
Alignment:
Q  10 gaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaa 109  Q
    ||||| |||||| |||||| ||||||||| |||||| | ||| |   |||||| | ||||| || ||| ||||||||||||||||||||  |  ||||||    
T  41766341 gaagaagaggaataaagcagtataaattacgtgttgatgatataccattagattcgatggatctccttaatccaacggtcttctttttaaagagtttaaa 41766242  T
Q  110 attaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaatt 190  Q
    ||||||||||||| | ||||   ||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||    
T  41766241 attaataaaatagaaccaaaactatgactaaaacaaagataaatgaccattttaaaacctttaatagttagggtaccaatt 41766161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 4534957 - 4535068
Alignment:
Q  40 gtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgacta 139  Q
    |||||||| ||||| ||||||||   ||| || | |||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||| |    
T  4534957 gtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggatttcaaattaataaaataggatcaaattgatgacga 4535056  T
Q  140 aaacaaagataa 151  Q
    ||||||||||||    
T  4535057 aaacaaagataa 4535068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 31 - 179
Target Start/End: Original strand, 12820017 - 12820164
Alignment:
Q  31 ataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaat 130  Q
    |||||||| |||||||| |||||  |||||||   ||| |||| |||||||||||||||||||||||    ||||||||||||||||||||||| |||||    
T  12820017 ataaattaggtgttggtgatacacagttagatatgatgaacctcctttatccaacggtcttctttttgagagatttaaaattaataaaataggaccaaat 12820116  T
Q  131 tgatgactaaaacaaagataaatgaccattttaaaacgtttaatagtta 179  Q
     || ||| ||||||||||| || |||||  |||||||||||||||||||    
T  12820117 cgacgacgaaaacaaagat-aaggaccaaattaaaacgtttaatagtta 12820164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 43414792 - 43414682
Alignment:
Q  10 gaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaa 109  Q
    ||||| |||||||||||||||||||||||||||| ||| |||||  ||||||||  ||| |||| ||||||||||||||||||||||||    |||||||    
T  43414792 gaagaagaggaagaaagcaatataaattatgtgtcggtgatacaccgttagatctgatgcacctcctttatccaacggtcttctttttaagaaatttaaa 43414693  T
Q  110 attaataaaat 120  Q
    |||||||||||    
T  43414692 attaataaaat 43414682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 188
Target Start/End: Complemental strand, 12818951 - 12818795
Alignment:
Q  31 ataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaat 130  Q
    |||||||| |||||||| |||||  |||||||   ||| |||| ||||||||||||||||| |||||    |||||||||||||||||||||||||||||    
T  12818951 ataaattaggtgttggtgatacagagttagatatgatgaacctcctttatccaacggtcttatttttgagagatttaaaattaataaaataggatcaaat 12818852  T
Q  131 tgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaa 188  Q
     ||| || ||||||||||| ||||||||  || ||| ||||||||||||  |||||||    
T  12818851 cgataacgaaaacaaagat-aatgaccaaattgaaatgtttaatagttaagggaccaa 12818795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 40 - 188
Target Start/End: Complemental strand, 16346287 - 16346140
Alignment:
Q  40 gtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgacta 139  Q
    |||||||| ||||| ||||||||   ||| || | |||||||||||||||||||||||  ||||||| ||||||||||||||||| ||||| |||||| |    
T  16346287 gtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggatttcaaattaataaaataggaccaaatcgatgacga 16346188  T
Q  140 aaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaa 188  Q
     ||||||||| || |||||  || ||||||||||||||||  |||||||    
T  16346187 taacaaagat-aaggaccaaattgaaacgtttaatagttaagggaccaa 16346140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 9189547 - 9189444
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaat 174  Q
    |||||||||||||||||||||||   ||||||||||||||||||||| || ||||||||||||  |||||||||| || |||||  || |||||||||||    
T  9189547 ctttatccaacggtcttcttttttagggatttaaaattaataaaatatgaccaaattgatgacagaaacaaagat-aaggaccaaattgaaacgtttaat 9189449  T
Q  175 agtta 179  Q
    |||||    
T  9189448 agtta 9189444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 9190405 - 9190481
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataa 151  Q
    |||||||||||||||||||||||   |||||||||||||||||||| ||| ||||| ||||||||||||||||||||    
T  9190405 ctttatccaacggtcttcttttttagggatttaaaattaataaaattggaccaaatcgatgactaaaacaaagataa 9190481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 179
Target Start/End: Original strand, 22914118 - 22914256
Alignment:
Q  40 gtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgacta 139  Q
    |||||||| ||||| ||||||||   ||| || | |||||||||||||||||||||||  ||||||| ||||||||||||||||| ||||| |||||| |    
T  22914118 gtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggatttcaaattaataaaataggaccaaatcgatgacga 22914217  T
Q  140 aaacaaagataaatgaccattttaaaacgtttaatagtta 179  Q
     |||||||||||  || ||  || ||||||||||||||||    
T  22914218 taacaaagataag-gatcaaattgaaacgtttaatagtta 22914256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 75 - 188
Target Start/End: Complemental strand, 4534187 - 4534075
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaat 174  Q
    |||||||||| ||||| ||||||   |||||||||||||||||||||||| |||||||||||| ||||||||||| || |||||  || |||| ||||||    
T  4534187 ctttatccaatggtctacttttttagggatttaaaattaataaaataggaccaaattgatgacgaaaacaaagat-aaggaccaaattgaaacatttaat 4534089  T
Q  175 agttagaggaccaa 188  Q
    | ||| ||||||||    
T  4534088 atttaaaggaccaa 4534075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 23768475 - 23768549
Alignment:
Q  102 gatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagt 177  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||| || ||||| |||||||| |||||||||    
T  23768475 gatttaaaattaataaaataggaccaaattgatgacgaaaacaaagat-aaggaccaatttaaaacatttaatagt 23768549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 112 - 191
Target Start/End: Complemental strand, 43414498 - 43414419
Alignment:
Q  112 taataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaattc 191  Q
    ||||||||||| | |||||||||||  |||||| ||||||| ||||||||| ||||||||||||||||| ||||||||||    
T  43414498 taataaaatagtaccaaattgatgatgaaaacatagataaaggaccattttgaaacgtttaatagttaggggaccaattc 43414419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 22913345 - 22913269
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataa 151  Q
    |||||||||| | ||| ||||||   |||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  22913345 ctttatccaatgatctacttttttagggatttaaaattaataaaataggaccaaattgatgacgaaaacaaagataa 22913269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 23768065 - 23767954
Alignment:
Q  40 gtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgacta 139  Q
    |||||||| ||||| ||||||||   ||| || | ||||||| || | || |||||||  ||||||| |||||||||||||| || ||||| |||||| |    
T  23768065 gtgttggtgatacacggttagatatgatgaacttcctttatctaatgatcatcttttttatggatttcaaattaataaaatatgaccaaatcgatgacga 23767966  T
Q  140 aaacaaagataa 151  Q
    ||||||||||||    
T  23767965 aaacaaagataa 23767954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 20066276 - 20066116
Alignment:
Q  31 ataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaat 130  Q
    |||||||| |||||||| |||||  |||| |||  ||||| ||  |||||||||||||||  |||||   ||| ||||||||||  |||||||| |||||    
T  20066276 ataaattaggtgttggtgatacactgttaaatctgatggatctcttttatccaacggtctctttttttaaggagttaaaattaaggaaataggaccaaat 20066177  T
Q  131 tga-tgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaatt 190  Q
    |||  |||| | ||| | ||||| |||||  || |||||||||| ||||| ||||||||||    
T  20066176 tgacagacttagacacatataaaagaccaaattgaaacgtttaaaagttataggaccaatt 20066116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 35462907 - 35463007
Alignment:
Q  31 ataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaat 130  Q
    |||||||| |||||||| |||||  ||||||||  || |||||  ||||||||||| ||| |||||||   || |||||||||| ||||||||| |||||    
T  35462907 ataaattaggtgttggtgatacactgttagatcagatagacctcatttatccaacgatctcctttttaaatgagttaaaattaacaaaataggaccaaat 35463006  T
Q  131 t 131  Q
    |    
T  35463007 t 35463007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 35462847 - 35462765
Alignment:
Q  49 atacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaatt 131  Q
    ||||| |||||||||  || |||||  ||||||||||||||| |||||||   || |||||||||| ||||||||| ||||||    
T  35462847 atacacggttagatctgatagacctcgtttatccaacggtctcctttttaaatgagttaaaattaacaaaataggaccaaatt 35462765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 35045791 - 35045972
Alignment:
Q  10 gaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaa 109  Q
    ||||| ||||| |||| ||||||||||||||||||||| |||||| ||||||||| ||||| || |||||||||||||| |||||||||  |  ||||||    
T  35045791 gaagaagaggaggaaaacaatataaattatgtgttggtgatacatcgttagatccgatggatctcctttatccaacggtattctttttaaggagtttaaa 35045890  T
Q  110 attaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaattc 191  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  35045891 attaataaaataggatcaaattgatgattaaaacaaagataaatgaccattttgaaacgtttaatagttagaagaccaattc 35045972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 2 - 191
Target Start/End: Original strand, 43704341 - 43704530
Alignment:
Q  2 aagaagatgaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattg 101  Q
    ||||||||||| || || |||||||||||||||||||||||||| | |||||  || |||||| ||||| || ||||||||||||||||||||||||  |    
T  43704341 aagaagatgaaaatcagaaagaaagcaatataaattatgtgttgatgatacaccgtaagatccgatggatctcctttatccaacggtcttctttttaagg 43704440  T
Q  102 gatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaattc 191  Q
    | |||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||    
T  43704441 ggtttaaaattaataaaataggattaaaatgatgactaaaacaaagataaaggaccattttgaaacgtttaatagttaggggaccaattc 43704530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 2 - 191
Target Start/End: Original strand, 36584794 - 36584983
Alignment:
Q  2 aagaagatgaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattg 101  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||| || ||   ||||||  ||||||||| |||||||||||||||||| |||||  |    
T  36584794 aagaagaggaagaagaggaagaaagcaatataaattatgtgttggtgatccactcttagatataatggacctcctttatccaacggtcttcgttttaagg 36584893  T
Q  102 gatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaattc 191  Q
    | |||||||||||||||||| || ||||||||||||||||| ||||||||| ||||||||| ||| ||||||||||||| ||||||||||    
T  36584894 gctttaaaattaataaaatatgaccaaattgatgactaaaataaagataaaggaccattttgaaatgtttaatagttaggggaccaattc 36584983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 40321281 - 40321119
Alignment:
Q  17 aggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaata 116  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||| ||||||||| |||||||||||||||||||||||| ||  |||||||||||||    
T  40321281 aggaagaaagcaatataaattatgtgttggtgatacactgttagatctaatggacctcctttatccaacggtcttctttttaatgattttaaaattaata 40321182  T
Q  117 aaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagtta 179  Q
    ||| |||  ||||||||||| ||||||||||||||| || |||||| ||||||||||||||||    
T  40321181 aaaaaggcccaaattgatgattaaaacaaagataaaggatcattttgaaacgtttaatagtta 40321119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 43703272 - 43703091
Alignment:
Q  10 gaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaa 109  Q
    ||||| |||||||||| ||||||||||||||||||||| |||||  ||||||||| ||| |||| ||||||||||||||||||||||||    |||||||    
T  43703272 gaagaagaggaagaaaacaatataaattatgtgttggtgatacaccgttagatccgatgcacctcctttatccaacggtcttctttttaagaaatttaaa 43703173  T
Q  110 attaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaattc 191  Q
    ||||||||||||| | |||||||||||  ||| || ||||||| |||||||||||||| |||||||||||| ||||||||||    
T  43703172 attaataaaatagtaccaaattgatgatgaaagcatagataaaagaccattttaaaacatttaatagttaggggaccaattc 43703091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 42521153 - 42521325
Alignment:
Q  8 atgaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggattta 107  Q
    ||||||| |||||||||||| |||||| |||||||||||| |||||  ||||||||| |||||||| ||||||||||||||||| ||||||  |  ||||    
T  42521153 atgaagaagaggaagaaagcgatataagttatgtgttggtgatacactgttagatccgatggacctcctttatccaacggtcttatttttaaggatttta 42521252  T
Q  108 aaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttag 180  Q
    ||||| ||||||||||| |||||||||||||||||||||| || | ||||||||| |||||||||||| ||||    
T  42521253 aaattgataaaataggaccaaattgatgactaaaacaaaggtagaggaccattttgaaacgtttaataattag 42521325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 10 - 172
Target Start/End: Original strand, 40322132 - 40322295
Alignment:
Q  10 gaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaa 109  Q
    ||||| ||||| |||| |||| |||||||||||||||| |||||| ||||||||| |||||||| ||||||||||  ||||||||||||  |  ||||||    
T  40322132 gaagaagaggaggaaaacaatttaaattatgtgttggtgatacatcgttagatccgatggacctcctttatccaattgtcttctttttaaggagtttaaa 40322231  T
Q  110 attaataaaataggatcaaattgatgactaaaacaaagataaatgaccatttt-aaaacgttta 172  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||    
T  40322232 attaataaaataggatcaaattgatgattaaaacaaagataaaagaccattttgaaaacgttta 40322295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 35044830 - 35044658
Alignment:
Q  19 gaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaat-aa 117  Q
    ||||||| ||||||||||||||||||||| |||||   ||||||| ||||||||| ||||||||||||||||||||||||  |  |||||||||||| ||    
T  35044830 gaagaaatcaatataaattatgtgttggtgatacactcttagatctaatggacctcctttatccaacggtcttctttttaaggattttaaaattaataaa 35044731  T
Q  118 aataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaatt 190  Q
    || | || ||||||||||| ||||||||||||||| || |||||| ||||||||||||||||| | |||||||    
T  35044730 aaaatgaccaaattgatgattaaaacaaagataaaggatcattttgaaacgtttaatagttagggaaccaatt 35044658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 42520440 - 42520260
Alignment:
Q  10 gaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaa 109  Q
    ||||| |||||| ||  ||||||||||||||||||||| |||||  ||||||||  || ||||| |||||||||||||||| ||||||| ||| ||||||    
T  42520440 gaagaagaggaataattcaatataaattatgtgttggtgatacaccgttagatctgatagacctcctttatccaacggtctactttttaatgggtttaaa 42520341  T
Q  110 attaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaattc 191  Q
    ||| |||||||| ||  |||||||||||||||||||||||| | ||||| ||| |||||||||||| |||| ||||||||||    
T  42520340 attgataaaatatgacaaaattgatgactaaaacaaagatacaggacca-tttgaaacgtttaatatttaggggaccaattc 42520260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 2 - 191
Target Start/End: Complemental strand, 36584085 - 36583894
Alignment:
Q  2 aagaagatgaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattg 101  Q
    ||||||||||||| |||||||| || |||||||||||||||||| | |||||  ||||||||| || || ||  |||||||||| ||||||||||||  |    
T  36584085 aagaagatgaagaagaggaagagagaaatataaattatgtgttgatgatacactgttagatccgatagatctcttttatccaacagtcttctttttaagg 36583986  T
Q  102 gatttaaaattaataaaat--aggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaattc 191  Q
    | |||||||||||||||||  || | |||||||||||||||| ||||| ||||  |  ||||||||| ||||||||||||||| ||||||||    
T  36583985 ggtttaaaattaataaaatagagaaccaaattgatgactaaatcaaagctaaagaattattttaaaatgtttaatagttagagaaccaattc 36583894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 75 - 188
Target Start/End: Complemental strand, 33070758 - 33070646
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaat 174  Q
    |||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||  || |||||||||||    
T  33070758 ctttatccaacggtcttcttttttatggatttaaaattaataaaatatgatcaaattgatgacaaaaacaaagataaa-gaccaaattgaaacgtttaat 33070660  T
Q  175 agttagaggaccaa 188  Q
    |||||  |||||||    
T  33070659 agttaagggaccaa 33070646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 35 - 188
Target Start/End: Original strand, 23153552 - 23153705
Alignment:
Q  35 attatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgat 134  Q
    |||| ||||| || |||||  ||||||||  |||||||| ||||||||||| |||||||||||    | |||||||||||||||||| ||| ||||||||    
T  23153552 attaggtgttagtgatacaccgttagatctgatggacctcctttatccaacagtcttctttttgagaggtttaaaattaataaaatatgattaaattgat 23153651  T
Q  135 gactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaa 188  Q
    ||  ||||||||||||||||||||  || ||||||||||||||||| |||||||    
T  23153652 gataaaaacaaagataaatgaccaaattgaaacgtttaatagttaggggaccaa 23153705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 47536748 - 47536928
Alignment:
Q  10 gaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaa 109  Q
    ||||| || |||||||| ||||||| ||| |||||||| |||||   |||||||  || |||||  ||||||||||||||||||||||      ||||||    
T  47536748 gaagaagatgaagaaagtaatataa-ttaggtgttggtgatacaccattagatctgatagacctcttttatccaacggtcttctttttgagaagtttaaa 47536846  T
Q  110 attaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaattc 191  Q
    || |||||||||||| |||||||||||  |||||||||||||| ||||| ||||||  ||||||||||||| ||||||||||    
T  47536847 atcaataaaataggaccaaattgatgataaaaacaaagataaaggaccaatttaaagtgtttaatagttaggggaccaattc 47536928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 179
Target Start/End: Complemental strand, 29344352 - 29344214
Alignment:
Q  40 gtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgacta 139  Q
    |||||||| ||||| ||||||||   ||| || | |||||||||||||||||||||||  ||||||| ||||||| ||||||||| ||||| |||||| |    
T  29344352 gtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggatttcaaattaaaaaaataggaccaaatcgatgacga 29344253  T
Q  140 aaacaaagataaatgaccattttaaaacgtttaatagtta 179  Q
    |||||||||| || |||||  |||||||||||||||||||    
T  29344252 aaacaaagat-aaggaccaaattaaaacgtttaatagtta 29344214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 56 - 190
Target Start/End: Complemental strand, 47535832 - 47535698
Alignment:
Q  56 gttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatga 155  Q
    ||||||||  ||||| || ||||||||||| ||| |||||||    | ||||||||||||||||||||| |||||||||||  |||||||||||||| ||    
T  47535832 gttagatctgatggatctcctttatccaacagtcatctttttgagaggtttaaaattaataaaataggaccaaattgatgataaaaacaaagataaagga 47535733  T
Q  156 ccattttaaaacgtttaatagttagaggaccaatt 190  Q
    |||  || ||||||||||||||||| |||| ||||    
T  47535732 ccaaattgaaacgtttaatagttaggggactaatt 47535698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 37783610 - 37783709
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaat 174  Q
    |||||||||||||||||||||||  ||||||| ||||||||||||||||| ||| | |||||| |||||||||||||| |||||  || |||||||||||    
T  37783610 ctttatccaacggtcttcttttttatggatttcaaattaataaaataggaccaactcgatgacgaaaacaaagataaa-gaccaaattgaaacgtttaat 37783708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 40881243 - 40881168
Alignment:
Q  76 tttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataa 151  Q
    ||||||||||||||||||||||   ||||||||||||||||||||| || |||||||||||| |||| ||||||||    
T  40881243 tttatccaacggtcttcttttttagggatttaaaattaataaaatatgaccaaattgatgacaaaaataaagataa 40881168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 29103272 - 29103374
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgat--gactaaaacaaagataaatgaccattttaaaacgttta 172  Q
    ||||||| |||||||||||||||  ||| |||||||||||||||||||||  ||||||||  |||||| ||||||||||| ||| ||||| |||  ||||    
T  29103272 ctttatctaacggtcttcttttttatgggtttaaaattaataaaataggactaaattgatgagactaagacaaagataaaggactattttgaaattttta 29103371  T
Q  173 ata 175  Q
    |||    
T  29103372 ata 29103374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 33071604 - 33071677
Alignment:
Q  78 tatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataa 151  Q
    ||||||||||||||||||||   |||||||||||||||||||| |||||||||  | ||| |||||||||||||    
T  33071604 tatccaacggtcttcttttttagggatttaaaattaataaaattggatcaaatcaacgacgaaaacaaagataa 33071677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 29345068 - 29345144
Alignment:
Q  101 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagtta 179  Q
    ||||||||||||||||||||| ||||||||||||||| ||| | ||||| ||||||||  ||||||| |||||||||||    
T  29345068 ggatttaaaattaataaaatacgatcaaattgatgacgaaagc-aagat-aatgaccaaattaaaacatttaatagtta 29345144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 47928393 - 47928469
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataa 151  Q
    ||||||||||||||||| |||||   |||||||||||||||||||| ||| ||||| ||||   |||||||||||||    
T  47928393 ctttatccaacggtcttgttttttagggatttaaaattaataaaattggaccaaatcgatgtagaaaacaaagataa 47928469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 25742993 - 25742926
Alignment:
Q  66 atggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattga 133  Q
    |||||||| ||||||||||| |||||||||||    ||||||||||||||||||||| | ||||||||    
T  25742993 atggaccttctttatccaactgtcttctttttgagagatttaaaattaataaaatagaaccaaattga 25742926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 188
Target Start/End: Complemental strand, 37782108 - 37781998
Alignment:
Q  77 ttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatag 176  Q
    |||||||| ||||| ||||||   |||||||||||||||||||||||| || ||| || || ||||||||||| || |||||  || |||| ||||||||    
T  37782108 ttatccaatggtctacttttttagggatttaaaattaataaaataggaccatatttatcacgaaaacaaagat-aaggaccaaattgaaacatttaatag 37782010  T
Q  177 ttagaggaccaa 188  Q
    ||| || |||||    
T  37782009 ttaaagaaccaa 37781998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 47537029 - 47537115
Alignment:
Q  101 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaa 188  Q
    |||||||||||||||||||||||| | |||||||||| |||| |||||| || |||||  || |||| |||||||||||  |||||||    
T  47537029 ggatttaaaattaataaaataggaccgaattgatgacgaaaataaagat-aaggaccaaattgaaacatttaatagttaagggaccaa 47537115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 185
Target Start/End: Original strand, 29658577 - 29658685
Alignment:
Q  76 tttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattg-atgactaaaacaaagataaatgaccattttaaaacgtttaat 174  Q
    ||||||||| ||||| |||||| | ||  ||||||| |||||||||||||||||| | |||| | |||  |||||||| ||||| |||||| ||||||||    
T  29658577 tttatccaatggtctccttttt-tgggggttaaaatgaataaaataggatcaaatagaatga-tgaaaagaagataaaggaccaatttaaaccgtttaat 29658674  T
Q  175 agttagaggac 185  Q
    |||||||||||    
T  29658675 agttagaggac 29658685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 190
Target Start/End: Complemental strand, 46196980 - 46196895
Alignment:
Q  105 ttaaaattaataaaataggatcaaattgat-gactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaatt 190  Q
    ||||||||||| |||||||| ||| ||||| ||  |||||||||||||| |||||  ||||||| |||||||||||| |||||||||    
T  46196980 ttaaaattaatgaaataggaccaa-ttgattgaggaaaacaaagataaacgaccaaattaaaacatttaatagttaggggaccaatt 46196895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 184
Target Start/End: Original strand, 32894829 - 32894868
Alignment:
Q  145 aagataaatgaccattttaaaacgtttaatagttagagga 184  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  32894829 aagataaatgaccaatttaaaacttttaatagttagagga 32894868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 19218874 - 19218965
Alignment:
Q  4 gaagatgaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttcttttt 97  Q
    |||||||||||||| ||||||   || |||||||| |||||||| |||||  |||| |||  ||||||||  ||||||||||||||| ||||||    
T  19218874 gaagatgaagatgaagaagaat--aaaataaattaggtgttggtgatacactgttaaatctcatggacctcttttatccaacggtctccttttt 19218965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 24653585 - 24653651
Alignment:
Q  31 ataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttcttttt 97  Q
    |||||||| |||||||| |||||||||||||||     ||||| |||||||||||||||| ||||||    
T  24653585 ataaattaagtgttggtgatacatggttagatctcccagacctcctttatccaacggtctccttttt 24653651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 190
Target Start/End: Complemental strand, 16955814 - 16955731
Alignment:
Q  107 aaaattaataaaataggatcaaattgat-gactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaatt 190  Q
    |||| |||| |||||||||||| ||||| ||  ||||||||||||||||||||  || ||||||||||||| ||| | |||||||    
T  16955814 aaaaataatgaaataggatcaa-ttgatcgaggaaaacaaagataaatgaccaaattgaaacgtttaatagctagggaaccaatt 16955731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 29409156 - 29409256
Alignment:
Q  31 ataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaat 130  Q
    |||||||| |||||||| |||||  ||||||||  || || ||  ||||||||||||||| |||||||   || |||||||||| |||||| || |||||    
T  29409156 ataaattaggtgttggttatacactgttagatctgatagatctcatttatccaacggtctcctttttaaatgagttaaaattaacaaaatatgaccaaat 29409255  T
Q  131 t 131  Q
    |    
T  29409256 t 29409256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 133
Target Start/End: Complemental strand, 29657113 - 29657085
Alignment:
Q  105 ttaaaattaataaaataggatcaaattga 133  Q
    |||||||||||||||||||||||||||||    
T  29657113 ttaaaattaataaaataggatcaaattga 29657085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 47927532 - 47927456
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataa 151  Q
    |||||||||||| |||| |||||   |||||||||||||||||||| | | ||||| ||||   |||||||||||||    
T  47927532 ctttatccaacgatcttattttttagggatttaaaattaataaaattgaaccaaatcgatgtagaaaacaaagataa 47927456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 8359311 - 8359492
Alignment:
Q  10 gaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaa 109  Q
    ||||| |||||||||||||||||||||||||||||||| |||||  |||| |||| | |||||| |||||||||||| |||||||||||  |||||||||    
T  8359311 gaagaagaggaagaaagcaatataaattatgtgttggtgatacaccgttaaatccgacggacctcctttatccaacgatcttctttttaagggatttaaa 8359410  T
Q  110 attaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaattc 191  Q
    ||| ||||||||||| |||| |||||||||||||||||||||| |||||||||||||| |||||||||||| ||||| ||||    
T  8359411 atttataaaataggaccaaaatgatgactaaaacaaagataaaagaccattttaaaacttttaatagttaggggaccgattc 8359492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 8358381 - 8358206
Alignment:
Q  16 gaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaat 115  Q
    |||||||||||||||||||||||||||||||| |||||  |||||||   |||||||| ||||| | ||||||||||||||||  | |||||||||||||    
T  8358381 gaggaagaaagcaatataaattatgtgttggtgatacaccgttagatttgatggacctcctttaacgaacggtcttctttttaaggaatttaaaattaat 8358282  T
Q  116 aaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaattc 191  Q
    |||||| || |||| |||||||||||||||||||||| |||||||||||||||||||||| |||| ||| ||||||    
T  8358281 aaaatatgaccaaaatgatgactaaaacaaagataaaagaccattttaaaacgtttaataattaggggatcaattc 8358206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 5163879 - 5163698
Alignment:
Q  10 gaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaa 109  Q
    ||||| ||||||||||||  |||||||||||||||||| |||||  ||||||| | ||||| || ||||||||||||||||| ||||||  |  ||||||    
T  5163879 gaagaagaggaagaaagctgtataaattatgtgttggtgatacaccgttagattcgatggatctcctttatccaacggtcttatttttaaggagtttaaa 5163780  T
Q  110 attaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaattc 191  Q
    |||||||||||| || ||||||||| | ||||||||||||||| || |||||| |||| |||||||||||| ||||||||||    
T  5163779 attaataaaatatgaccaaattgataattaaaacaaagataaaggatcattttgaaacatttaatagttaggggaccaattc 5163698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 38603647 - 38603816
Alignment:
Q  10 gaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattgga-tttaa 108  Q
    ||||| || ||||||||  |||||||| | |||||||| |||||   |||||||  |||||||| ||||||||||||||||||||||| | ||| |||||    
T  38603647 gaagaagatgaagaaagtgatataaatgaggtgttggtgatacactattagatctgatggaccttctttatccaacggtcttcttttt-taggagtttaa 38603745  T
Q  109 aattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagtta 179  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  38603746 aattaataaaataggaccaaattgatgactaaaacaaagataaaggaccattttgaaaagtttaatagtta 38603816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 42962241 - 42962061
Alignment:
Q  10 gaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaa 109  Q
    ||||| || |||||||| ||||||| ||| |||||||| |||||   |||||||  || ||||| |||||||||||||||||||||||    | ||||||    
T  42962241 gaagaagatgaagaaagtaatataa-ttaggtgttggtgatacaccattagatcttatagacctcctttatccaacggtcttctttttgagaggtttaaa 42962143  T
Q  110 attaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaattc 191  Q
    ||||||||||||||| |||||||||||  |||||||||||||| ||||| |||||| |||||||||||||| ||||||||||    
T  42962142 attaataaaataggaccaaattgatgatgaaaacaaagataaaggaccaatttaaagcgtttaatagttaggggaccaattc 42962061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 66 - 190
Target Start/End: Original strand, 42963168 - 42963292
Alignment:
Q  66 atggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaa 165  Q
    |||||||| ||||||||||||||| |||||||    | |||||||||||||||||||||| ||||||||||  ||||||||||||||||||||  || ||    
T  42963168 atggacctcctttatccaacggtcatctttttgagaggtttaaaattaataaaataggattaaattgatgatgaaaacaaagataaatgaccaaattgaa 42963267  T
Q  166 acgtttaatagttagaggaccaatt 190  Q
    |||||||||||||||||||||||||    
T  42963268 acgtttaatagttagaggaccaatt 42963292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 29 - 179
Target Start/End: Original strand, 39051589 - 39051738
Alignment:
Q  29 atataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattgga-tttaaaattaataaaataggatca 127  Q
    |||||||||| |||||| | |||||   |||||||  |||||||| ||||||| | ||||||| |||| |  ||| ||||||||||||||||||||||||    
T  39051589 atataaattaggtgttgatgatacactattagatctgatggaccttctttatctagcggtctttttttga--ggagtttaaaattaataaaataggatca 39051686  T
Q  128 aattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagtta 179  Q
    ||||||||||||||||||||||||| ||||||||| |||| |||||||||||    
T  39051687 aattgatgactaaaacaaagataaaggaccattttgaaacatttaatagtta 39051738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 104 - 191
Target Start/End: Complemental strand, 301485 - 301398
Alignment:
Q  104 tttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaattc 191  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||| || ||||||| |||||||||||||||||||| ||||||    
T  301485 tttaaaattaataaaataggatcaaattgatggctaaaacaaagagaaaagatcattttataacgtttaatagttagaggatcaattc 301398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 38602873 - 38602712
Alignment:
Q  19 gaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaa 118  Q
    ||||||||  |||||||||| |||||||| |||||| ||||||||  ||| |  |  |||||||||| |||||||||||   |  |||||||||||||||    
T  38602873 gaagaaagtgatataaattaagtgttggtgatacattgttagatctgatgaatatcttttatccaactgtcttctttttgaggagtttaaaattaataaa 38602774  T
Q  119 ataggatcaaattgatgactaaaacaaa-gataaatgaccattttaaaacgtttaatagtta 179  Q
    ||| || |||||| |||||||||| ||| |||| | ||||||||||||||||||||||||||    
T  38602773 atatgaccaaatttatgactaaaataaaagatagaggaccattttaaaacgtttaatagtta 38602712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 104 - 190
Target Start/End: Complemental strand, 39050813 - 39050727
Alignment:
Q  104 tttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaatt 190  Q
    |||||||||||||||||| || |||||| |||||||||| ||||||||| ||||||||| ||||||||||||||||  |||||||||    
T  39050813 tttaaaattaataaaatatgaccaaatttatgactaaaataaagataaaggaccattttgaaacgtttaatagttaagggaccaatt 39050727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 39135611 - 39135714
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaat 174  Q
    |||||||||| ||||| ||||||   |||||||||||||||||||||||| |||||||||||  ||||||||||| ||||||||  || |||| ||||||    
T  39135611 ctttatccaatggtctacttttttggggatttaaaattaataaaataggaccaaattgatgaggaaaacaaagat-aatgaccaaattgaaacatttaat 39135709  T
Q  175 agtta 179  Q
    |||||    
T  39135710 agtta 39135714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 188
Target Start/End: Original strand, 11907124 - 11907236
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaat 174  Q
    |||||||||| ||||| ||||||   ||||||||||||||||||||| || |||||||||||| ||||||||||| || |||||  || |||| ||||||    
T  11907124 ctttatccaatggtctacttttttagggatttaaaattaataaaatatgaccaaattgatgacgaaaacaaagat-aaggaccaaattgaaacatttaat 11907222  T
Q  175 agttagaggaccaa 188  Q
    |||||  |||||||    
T  11907223 agttaagggaccaa 11907236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 23679300 - 23679224
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataa 151  Q
    ||||||||||||||||| |||||   |||||||| ||||||||||||||||||||| |||||| |||| ||||||||    
T  23679300 ctttatccaacggtcttttttttgagggatttaatattaataaaataggatcaaatcgatgacgaaaataaagataa 23679224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 23855512 - 23855588
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataa 151  Q
    ||||||||||||||||| |||||   |||||||| ||||||||||||||||||||| |||||| |||| ||||||||    
T  23855512 ctttatccaacggtcttttttttgagggatttaatattaataaaataggatcaaatcgatgacgaaaataaagataa 23855588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 24071406 - 24071482
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataa 151  Q
    ||||||||||||||||| |||||   |||||||||||||||||||| ||| ||||| |||||| |||||||||||||    
T  24071406 ctttatccaacggtcttgttttttagggatttaaaattaataaaattggaccaaatggatgacgaaaacaaagataa 24071482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 40 - 188
Target Start/End: Complemental strand, 39134855 - 39134708
Alignment:
Q  40 gtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgacta 139  Q
    |||||||| ||||| ||||||||   ||| || | |||||||||||||| ||||||||   |||||| ||||||||||||||| | |||||||||| | |    
T  39134855 gtgttggtgatacacggttagatatgatgaacttcctttatccaacggtattcttttttagggatttcaaattaataaaatagcaccaaattgatgtcga 39134756  T
Q  140 aaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaa 188  Q
    ||||||||||||   ||||  || ||||||||||||||||  |||||||    
T  39134755 aaacaaagataaga-accaaattgaaacgtttaatagttaagggaccaa 39134708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 4904356 - 4904280
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataa 151  Q
    |||||||||||||||||||||||     ||||||||||||||||||| || ||||| |||||  |||||||||||||    
T  4904356 ctttatccaacggtcttcttttttagaaatttaaaattaataaaatatgaccaaatcgatgatgaaaacaaagataa 4904280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 14357845 - 14357902
Alignment:
Q  76 tttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattga 133  Q
    ||||||||||||||| |||||| | ||  |||||||||||||||||||| ||||||||    
T  14357845 tttatccaacggtctcctttttttgggggttaaaattaataaaataggaccaaattga 14357902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 30674748 - 30674814
Alignment:
Q  31 ataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttcttttt 97  Q
    |||||||| |||||||| |||||||||||||||  |  ||||| |||||| ||||||||| ||||||    
T  30674748 ataaattaggtgttggtgatacatggttagatcttacagacctcctttattcaacggtctccttttt 30674814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 11 - 191
Target Start/End: Original strand, 50003121 - 50003301
Alignment:
Q  11 aagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaa 110  Q
    |||| ||||||||||| |||||||||||||||||||| |||||  ||||||||  || ||||| ||||||||||||||||| ||||||  |  |||||||    
T  50003121 aagaagaggaagaaagtaatataaattatgtgttggtgatacaccgttagatctgattgacctcctttatccaacggtcttatttttaaggagtttaaaa 50003220  T
Q  111 ttaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaattc 191  Q
    |||||||||||||| ||||||||||| ||||||||| ||||| ||||||||| ||||||||||||||||| ||||||||||    
T  50003221 ttaataaaataggaccaaattgatgattaaaacaaacataaaggaccattttgaaacgtttaatagttaggggaccaattc 50003301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 21248154 - 21248324
Alignment:
Q  10 gaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaa 109  Q
    ||||| |||||| ||| ||||||||||||||||||||| |||||  ||||||||| |||||||| ||| ||||||| ||||||||||||   | ||||||    
T  21248154 gaagaagaggaaaaaaccaatataaattatgtgttggtgatacaccgttagatccgatggacctccttaatccaacagtcttctttttaagaggtttaaa 21248253  T
Q  110 attaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttag 180  Q
    ||||||||||||||| |||| | |||||||||||||||||||  ||||||||| |||||||||||||||||    
T  21248254 attaataaaataggaccaaaataatgactaaaacaaagataagggaccattttgaaacgtttaatagttag 21248324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 189
Target Start/End: Complemental strand, 50002632 - 50002453
Alignment:
Q  10 gaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaa 109  Q
    ||||| |||||||||| ||||||||||||||||||||| |||||  ||||||||  ||||| || |||||||||||| ||||||||| |  |  ||||||    
T  50002632 gaagaagaggaagaaaacaatataaattatgtgttggtgatacaccgttagatctgatggatctcctttatccaacgatcttcttttgaaggagtttaaa 50002533  T
Q  110 attaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaat 189  Q
    |||||||||||||||  |||||||||| ||||||||| ||||| ||||||||  ||||||||||||||||| ||||||||    
T  50002532 attaataaaataggactaaattgatgattaaaacaaacataaaggaccatttcgaaacgtttaatagttaggggaccaat 50002453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 5 - 190
Target Start/End: Complemental strand, 21247460 - 21247275
Alignment:
Q  5 aagatgaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggat 104  Q
    |||||||||| |||||| |||||| ||||||||| |||||||| |||||   |||||| | ||| | || ||| ||||||||||||||||||||  |  |    
T  21247460 aagatgaagaagaggaataaagcagtataaattacgtgttggtgatacaccattagattcgatgcatctccttaatccaacggtcttctttttaaagagt 21247361  T
Q  105 ttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaatt 190  Q
    |||||||||||||||||| | |||| | |||||||||||||||||||  ||||||||| ||||||||||||||||| |||||||||    
T  21247360 ttaaaattaataaaatagaaccaaaattatgactaaaacaaagataagggaccattttgaaacgtttaatagttaggggaccaatt 21247275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 55387550 - 55387723
Alignment:
Q  17 aggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaata 116  Q
    |||| |||||||||||||||||||||||| | |||||  ||||||||  ||| |||| ||||||||||| ||||| ||||||  |  |||||||| ||||    
T  55387550 aggatgaaagcaatataaattatgtgttgatgatacactgttagatcggatgaacctcctttatccaacagtcttttttttaaggattttaaaatcaata 55387649  T
Q  117 aaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaatt 190  Q
    ||||| || ||||||||||| ||||||||||||||| || ||| |||||||||||||||||||||  |||||||    
T  55387650 aaatatgaccaaattgatgattaaaacaaagataaaagatcatcttaaaacgtttaatagttagaaaaccaatt 55387723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 191
Target Start/End: Complemental strand, 5409497 - 5409376
Alignment:
Q  70 acctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgt 169  Q
    |||| ||||||||||||||||||||||||   | ||||||||||||||||| |||||||||||||||  |||||||||||||| |||||  ||||||| |    
T  5409497 acctcctttatccaacggtcttctttttaagaggtttaaaattaataaaattggatcaaattgatgatgaaaacaaagataaaggaccaaattaaaacat 5409398  T
Q  170 ttaatagttagaggaccaattc 191  Q
    || ||| ||| | |||||||||    
T  5409397 tttataattaaaagaccaattc 5409376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 27225643 - 27225483
Alignment:
Q  19 gaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaa 118  Q
    |||||||| ||||||||||| |||| ||| |||||   |||||||  |||||| | |||||||||||||||||||||||    | |||||||||||||||    
T  27225643 gaagaaaggaatataaattaggtgtcggtgatacacctttagatctgatggactttctttatccaacggtcttctttttgaaaggtttaaaattaataaa 27225544  T
Q  119 ataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagtta 179  Q
    ||||||  ||||||||||| |||||||| |||||  ||||  || ||||||||| ||||||    
T  27225543 ataggactaaattgatgacgaaaacaaacataaagaaccaaattgaaacgtttattagtta 27225483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 40 - 179
Target Start/End: Original strand, 33000728 - 33000866
Alignment:
Q  40 gtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgacta 139  Q
    |||||||| ||||| ||||||||   ||| || | ||||||||||||||||||||||| |||||||| |||||||||||||||||  |||| |||||| |    
T  33000728 gtgttggtgatacacggttagatatgatgtacttcctttatccaacggtcttcttttttttggatttcaaattaataaaataggactaaatcgatgacca 33000827  T
Q  140 aaacaaagataaatgaccattttaaaacgtttaatagtta 179  Q
    |||||||| | || |||||  || ||||||||||||||||    
T  33000828 aaacaaaggt-aaggaccaaattgaaacgtttaatagtta 33000866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 56 - 172
Target Start/End: Original strand, 27226482 - 27226598
Alignment:
Q  56 gttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatga 155  Q
    ||||||||  |||||||| |||||||||||| ||||||||||   || ||||||||||||||||||||| |||||||||||  |||||||| ||||| ||    
T  27226482 gttagatcttatggacctcctttatccaacgatcttctttttgaggggtttaaaattaataaaataggaccaaattgatgatgaaaacaaacataaagga 27226581  T
Q  156 ccattttaaaacgttta 172  Q
    |||  || |||||||||    
T  27226582 ccaaattgaaacgttta 27226598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 53901722 - 53901619
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaat 174  Q
    |||||||||||||||||||||||   |||||||||||||||||||  ||| ||||| |||||| |||||||||||||| |||||  ||||||| ||||||    
T  53901722 ctttatccaacggtcttcttttttagggatttaaaattaataaaagtggaccaaatcgatgacgaaaacaaagataaa-gaccaaattaaaacatttaat 53901624  T
Q  175 agtta 179  Q
    |||||    
T  53901623 agtta 53901619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 39530948 - 39530872
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataa 151  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||||| || ||||| |||||| |||||||||||||    
T  39530948 ctttatccaacggtcttctttttaaaggaattaaaattaataaaatatgaccaaatcgatgacgaaaacaaagataa 39530872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 188
Target Start/End: Complemental strand, 45730825 - 45730678
Alignment:
Q  40 gtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgacta 139  Q
    |||||||| ||||| ||||||||   ||| || | |||||||||||||||||||||||  ||||||| |||||||||||||||||  |||| |||||  |    
T  45730825 gtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggatttcaaattaataaaataggactaaatcgatgatga 45730726  T
Q  140 aaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaa 188  Q
    ||||||||||||  | |||  || ||||||||||||||||  |||||||    
T  45730725 aaacaaagataag-gtccaaattgaaacgtttaatagttaagggaccaa 45730678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 31 - 151
Target Start/End: Complemental strand, 46688603 - 46688484
Alignment:
Q  31 ataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaat 130  Q
    |||||||| |||||||| |||||  |||||||   ||| |||| ||||||||| ||||||||||||| | ||||||||||||||||||||| || |||||    
T  46688603 ataaattaggtgttggtgatacacagttagatatgatgaacctgctttatccagcggtcttcttttt-taggatttaaaattaataaaatatgaccaaat 46688505  T
Q  131 tgatgactaaaacaaagataa 151  Q
     |||||  |||||||||||||    
T  46688504 cgatgaaaaaaacaaagataa 46688484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 50765737 - 50765840
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaat 174  Q
    |||||||||| ||||||||||||    ||||||||||||||||||||| ||||||| |||||| ||||||||||| || |||||  || |||||||||||    
T  50765737 ctttatccaatggtcttctttttgagagatttaaaattaataaaatagaatcaaatcgatgaccaaaacaaagat-aaggaccaaattgaaacgtttaat 50765835  T
Q  175 agtta 179  Q
    |||||    
T  50765836 agtta 50765840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 39531779 - 39531855
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataa 151  Q
    |||||||||||||||||||||||   |||||||||||||||||||| ||| ||||| ||| || |||||||||||||    
T  39531779 ctttatccaacggtcttcttttttagggatttaaaattaataaaattggaccaaatcgataacgaaaacaaagataa 39531855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 5411230 - 5411305
Alignment:
Q  104 tttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagtta 179  Q
    ||||||||||||||||||||| || ||||||| | |||||||||||||| |||||  ||||||| |||||||||||    
T  5411230 tttaaaattaataaaataggaccacattgatggcgaaaacaaagataaaagaccaaattaaaacatttaatagtta 5411305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 190
Target Start/End: Complemental strand, 5384574 - 5384460
Alignment:
Q  76 tttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaata 175  Q
    ||||||| |||||||||||||||   | ||||||||||||||||| ||| ||||||||||   |||||||||||| | |||||  || |||||||| |||    
T  5384574 tttatcccacggtcttctttttaagaggtttaaaattaataaaattggaccaaattgatgttgaaaacaaagatagaggaccaaattgaaacgttttata 5384475  T
Q  176 gttagaggaccaatt 190  Q
     ||| ||||||||||    
T  5384474 attaaaggaccaatt 5384460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 32999924 - 32999874
Alignment:
Q  101 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataa 151  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  32999924 ggatttaaaattaataaaataggaccaaattgatgacgaaaacaaagataa 32999874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 188
Target Start/End: Original strand, 14206677 - 14206855
Alignment:
Q  10 gaagatgaggaagaaa-gcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggat-tta 107  Q
    |||||||| ||||||| | || ||||||||  | ||||| |||||  ||||||||  || |||||  ||||||||||| |||  ||||||| |||| |||    
T  14206677 gaagatgatgaagaaaagtaaaataaattagatattggtgatacacagttagatctgatagacctcatttatccaacg-tctcatttttat-ggatgtta 14206774  T
Q  108 aaattaataaaataggatcaaattga-tgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaa 188  Q
    |||| |||||||||||| |||||||| |||   ||| || |||||||||||| |||||||||||||||||||||||||||||    
T  14206775 aaatgaataaaataggaccaaattgaatgatggaaagaa-gataaatgaccaatttaaaacgtttaatagttagaggaccaa 14206855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 188
Target Start/End: Original strand, 14214425 - 14214603
Alignment:
Q  10 gaagatgaggaagaaa-gcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggat-tta 107  Q
    |||||||| ||||||| | || ||||||||  | ||||| |||||  ||||||||  || |||||  ||||||||||| |||  ||||||| |||| |||    
T  14214425 gaagatgatgaagaaaagtaaaataaattagatattggtgatacacagttagatctgatagacctcatttatccaacg-tctcatttttat-ggatgtta 14214522  T
Q  108 aaattaataaaataggatcaaattga-tgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaa 188  Q
    |||| |||||||||||| |||||||| |||   ||| || |||||||||||| |||||||||||||||||||||||||||||    
T  14214523 aaatgaataaaataggaccaaattgaatgatggaaagaa-gataaatgaccaatttaaaacgtttaatagttagaggaccaa 14214603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 179
Target Start/End: Original strand, 46690212 - 46690360
Alignment:
Q  31 ataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattg-gatttaaaattaataaaataggatcaaa 129  Q
    |||||||| |||||||| ||||| ||||||||    |  |||| |||||||||| ||||||||||||   | ||||||||||||||||||||| | ||||    
T  46690212 ataaattaggtgttggtgatacacggttagatatggtaaacctcctttatccaatggtcttcttttttgagagatttaaaattaataaaatagaaccaaa 46690311  T
Q  130 ttgatgactaaaacaaagataaatgaccattttaaaacgtttaatagtta 179  Q
    | |||||| |||| | ||||||| || ||  |||||||||||||||||||    
T  46690312 tcgatgacaaaaatatagataaa-gatcaaattaaaacgtttaatagtta 46690360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 50150873 - 50150801
Alignment:
Q  76 tttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaaga 148  Q
    ||||| ||||||||| |||| |   |||||||||||||||||||||||| |||||||||||| ||||||||||    
T  50150873 tttattcaacggtctactttcttagggatttaaaattaataaaataggaccaaattgatgacgaaaacaaaga 50150801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 2088969 - 2088919
Alignment:
Q  101 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataa 151  Q
    |||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  2088969 ggatttaaaattaataaaataggaccaaattgatgatgaaaacaaagataa 2088919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 188
Target Start/End: Complemental strand, 48336536 - 48336388
Alignment:
Q  40 gtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattg-atgact 138  Q
    |||||||| |||||  |||||||| |||  ||||  ||||||||||||||| |||||  | ||  ||||||| |||||||||||| ||||||| |||| |    
T  48336536 gtgttggtgatacacagttagatctaataaacctcatttatccaacggtctccttttcttgggggttaaaatgaataaaataggaccaaattgaatga-t 48336438  T
Q  139 aaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaa 188  Q
      ||  ||||||||||| || |||  ||||||||||||||||||||||||    
T  48336437 ggaaagaagataaatgatcaatttggaacgtttaatagttagaggaccaa 48336388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 4068079 - 4067976
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaat 174  Q
    ||||||||||||||||| |||||   |||| ||||||||||||||| ||||||||| ||||   ||||| ||||| || |||||  ||||||| ||||||    
T  4068079 ctttatccaacggtcttgttttttagggatctaaaattaataaaattggatcaaatcgatgtagaaaactaagat-aaggaccaaattaaaacatttaat 4067981  T
Q  175 agtta 179  Q
    |||||    
T  4067980 agtta 4067976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 53902599 - 53902670
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaa 146  Q
    |||||||||||||||||| ||||   ||||||||||||||||||||| || | ||| |||||| ||||||||    
T  53902599 ctttatccaacggtcttcgtttttagggatttaaaattaataaaatatgacctaatcgatgacgaaaacaaa 53902670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 8895354 - 8895195
Alignment:
Q  31 ataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaat 130  Q
    |||||||| |||||||| ||||| |||||||||  || |||||| ||||||| | | ||| ||||||   ||  ||||||||||| |||||||| |||||    
T  8895354 ataaattacgtgttggtgatacacggttagatctgatagacctaatttatccgatgatctccttttttagggggttaaaattaatgaaataggaccaaat 8895255  T
Q  131 tg-atgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaatt 190  Q
    || ||||   |||| || | |||||||||  || ||||||||| ||||||| |||||||||    
T  8895254 tgaatgaaggaaac-aataaaaatgaccaaattgaaacgtttagtagttagtggaccaatt 8895195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 2764004 - 2764070
Alignment:
Q  31 ataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttcttttt 97  Q
    |||||||| |||||||| |||||||||||||||  |  || || |||||||||||||||| ||||||    
T  2764004 ataaattaagtgttggtgatacatggttagatctcacagatctcctttatccaacggtctccttttt 2764070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 1032826 - 1032871
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaat 120  Q
    |||||||||||| ||||||||||   ||||||||||||||||||||    
T  1032826 ctttatccaacgatcttctttttcagggatttaaaattaataaaat 1032871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 2 - 190
Target Start/End: Complemental strand, 10330932 - 10330745
Alignment:
Q  2 aagaagatgaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattg 101  Q
    ||||||||||||| |||||||||||||||| |||||| ||||| || |||||  ||||||||  || ||||| ||||||||||  ||||||||||||  |    
T  10330932 aagaagatgaagaagaggaagaaagcaataaaaattacgtgtttgtgatacactgttagatctgatagacct-ctttatccaatagtcttctttttaagg 10330834  T
Q  102 gatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaatt 190  Q
    | ||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||    
T  10330833 ggtttaaaattaataaaataggaccaaattaatggctaaaacaaagataaatgaccattttgaaacgtttaatcgttaggggaccaatt 10330745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 38593240 - 38593081
Alignment:
Q  19 gaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaa 118  Q
    ||||||||  |||||||||| |||||||| |||||   |||||||  ||||| || |||||||||||||||||||||||   |  |||||||||||||||    
T  38593240 gaagaaagtgatataaattaagtgttggtgatacactattagatctgatggatct-ctttatccaacggtcttctttttgaggagtttaaaattaataaa 38593142  T
Q  119 ataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagtta 179  Q
    |||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||    
T  38593141 ataggaccaaattgatgactaaaacaaagacaaaggaccattttgaaacgtttaatagtta 38593081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 38596836 - 38596677
Alignment:
Q  19 gaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaa 118  Q
    ||||||||  |||||||||| |||||||| |||||   |||||||  ||||| || |||||||||||||||||||||||   |  |||||||||||||||    
T  38596836 gaagaaagtgatataaattaagtgttggtgatacactattagatctgatggatct-ctttatccaacggtcttctttttgaggagtttaaaattaataaa 38596738  T
Q  119 ataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagtta 179  Q
    |||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||    
T  38596737 ataggaccaaattgatgactaaaacaaagacaaaggaccattttgaaacgtttaatagtta 38596677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 38593957 - 38594113
Alignment:
Q  19 gaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaa 118  Q
    ||||||||  |||||||||| |||||||| |||||     |||||  |||||||| |||||||||||  ||||||||||  |   |||||||||||||||    
T  38593957 gaagaaagtgatataaattaggtgttggtgatacac----agatctgatggacctcctttatccaacaatcttctttttgataagtttaaaattaataaa 38594052  T
Q  119 ataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagtta 179  Q
    |||||| |||||| ||| |||||| ||||||||||||||||||||||||||||||||||||    
T  38594053 ataggaccaaatttatgtctaaaataaagataaatgaccattttaaaacgtttaatagtta 38594113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 38597553 - 38597709
Alignment:
Q  19 gaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaa 118  Q
    ||||||||  |||||||||| |||||||| |||||     |||||  |||||||| |||||||||||  ||||||||||  |   |||||||||||||||    
T  38597553 gaagaaagtgatataaattaggtgttggtgatacac----agatctgatggacctcctttatccaacaatcttctttttgataagtttaaaattaataaa 38597648  T
Q  119 ataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagtta 179  Q
    |||||| |||||| ||| |||||| ||||||||||||||||||||||||||||||||||||    
T  38597649 ataggaccaaatttatgtctaaaataaagataaatgaccattttaaaacgtttaatagtta 38597709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 173
Target Start/End: Original strand, 30179480 - 30179612
Alignment:
Q  40 gtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgacta 139  Q
    |||||||| ||||| ||||||||   ||| || | ||||||||||||||||| |||||  ||||||| ||||||||||||||||| ||||| |||||| |    
T  30179480 gtgttggtgatacacggttagatatgatgaacttcctttatccaacggtctttttttttatggatttcaaattaataaaataggaccaaatcgatgacga 30179579  T
Q  140 aaacaaagataaatgaccattttaaaacgtttaa 173  Q
    ||||||||||||| |||||  |||||||||||||    
T  30179580 aaacaaagataaa-gaccaaattaaaacgtttaa 30179612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 190
Target Start/End: Complemental strand, 370985 - 370806
Alignment:
Q  10 gaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaa 109  Q
    ||||| || |||||||| ||||||| ||| |||||||| |||||   ||||||   || |||||  |||||||||||||||| |||||    | ||||||    
T  370985 gaagaagatgaagaaagtaatataa-ttaggtgttggtgatacaccattagatttgatagacctcatttatccaacggtcttattttttagaggtttaaa 370887  T
Q  110 attaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaatt 190  Q
    || ||||||||||||||||||||||||  |||||||||||||||||||| ||||||  |||||||| |||| | |||||||    
T  370886 atcaataaaataggatcaaattgatgataaaaacaaagataaatgaccaatttaaagtgtttaatatttagggaaccaatt 370806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 190
Target Start/End: Original strand, 371889 - 372044
Alignment:
Q  35 attatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgat 134  Q
    |||| ||||| || |||||  ||||||||  ||| |||| ||||||||||| ||| |||||||    | |||||||||||||||||||||||||||||||    
T  371889 attaggtgttagtgatacaccgttagatctgatgaacctcctttatccaacagtcatctttttgagaggtttaaaattaataaaataggatcaaattgat 371988  T
Q  135 gactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaatt 190  Q
    ||  |||||||||||||| || ||  || ||||||||||||||||| |||| ||||    
T  371989 gatgaaaacaaagataaaggatcaaattgaaacgtttaatagttaggggactaatt 372044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 40 - 188
Target Start/End: Original strand, 39272138 - 39272285
Alignment:
Q  40 gtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgacta 139  Q
    |||||||| ||||| ||||||||   ||| || | |||||| || |||||||||||||    ||||||||||||| |||||| |||||||| | |||| |    
T  39272138 gtgttggtgatacacggttagatatgatgaacttcctttattcatcggtcttcttttttagagatttaaaattaaaaaaatatgatcaaatcgctgacga 39272237  T
Q  140 aaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaa 188  Q
    |||||||||| ||||||||  ||||||||||||||||||| ||||||||    
T  39272238 aaacaaagat-aatgaccaaattaaaacgtttaatagttaaaggaccaa 39272285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 12364409 - 12364238
Alignment:
Q  10 gaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaa 109  Q
    ||||| || |||||||  || ||||||||||||||||| |||||  ||||||||  || |||||  ||||||||| ||||  |||||| | ||  |||||    
T  12364409 gaagaagatgaagaaaagaaaataaattatgtgttggtgatacacagttagatctgatagacctcatttatccaatggtcccctttttttgggggttaaa 12364310  T
Q  110 attaataaaataggatcaaattgatg-actaaaacaaagataaatgaccattttaaaacgtttaatagttaga 181  Q
    || ||| |||||||| |||||||| | ||| ||| || |||||||||||| ||||||||||||||||||||||    
T  12364309 ataaattaaataggaccaaattgaaggactgaaagaa-gataaatgaccaatttaaaacgtttaatagttaga 12364238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 20630634 - 20630737
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaat 174  Q
    |||||||||||||| ||||||||   |||||||||||||||||||| ||| ||||| |||||| ||||||||||| || |||||  || |||||||||||    
T  20630634 ctttatccaacggtattcttttttagggatttaaaattaataaaattggaccaaatcgatgacgaaaacaaagat-aaggaccaaattgaaacgtttaat 20630732  T
Q  175 agtta 179  Q
    |||||    
T  20630733 agtta 20630737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 30178698 - 30178622
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataa 151  Q
    |||||||||| ||||| ||||||   | ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30178698 ctttatccaatggtctacttttttaggtatttaaaattaataaaataggatcaaattgatgacgaaaacaaagataa 30178622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 33553328 - 33553431
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaat 174  Q
    |||||| ||||||||||||||||    ||||||||||||||||||||||| ||||| |||||| ||||||||||| || |||||  || |||||||||||    
T  33553328 ctttattcaacggtcttctttttgagagatttaaaattaataaaataggaccaaatcgatgacgaaaacaaagat-aaggaccaaattgaaacgtttaat 33553426  T
Q  175 agtta 179  Q
    |||||    
T  33553427 agtta 33553431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 40542433 - 40542331
Alignment:
Q  31 ataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaat 130  Q
    |||||||| || ||| | |||||  |||| |||| |||||||| ||||||| |||||||| ||||||   ||| ||||||||||| |||||||| |||||    
T  40542433 ataaattaggtattgatgatacaccgttaaatccgatggacctcctttatctaacggtctccttttttagggagttaaaattaatgaaataggaccaaat 40542334  T
Q  131 tga 133  Q
    |||    
T  40542333 tga 40542331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 189
Target Start/End: Complemental strand, 28051 - 27871
Alignment:
Q  10 gaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacg--gtcttctttttattggattta 107  Q
    ||||| |||||||||||||||||||||||||||||||| |||||   |||||||  |||||||| ||||||||||    ||||||||||||  |||||||    
T  28051 gaagaagaggaagaaagcaatataaattatgtgttggtgatacacttttagatctgatggacct-ctttatccaaaatagtcttctttttaagggattta 27953  T
Q  108 aaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaat 189  Q
    ||||||||||||||||| ||| |||||| |||||||||||||||||||||||||| ||||||||||  ||||| ||||||||    
T  27952 aaattaataaaataggaccaacttgatggctaaaacaaagataaatgaccattttgaaacgtttaaccgttaggggaccaat 27871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 32314 - 32158
Alignment:
Q  16 gaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaat 115  Q
    ||||||||||||||||| |||||||||||||| |||||| ||||||||  |||| ||| ||||||||||  ||||||||| ||  || ||||||||||||    
T  32314 gaggaagaaagcaatatgaattatgtgttggtgatacattgttagatctgatgggcct-ctttatccaatagtcttctttctaaggggtttaaaattaat 32216  T
Q  116 aaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaa 173  Q
    ||||||||| |||||||||| ||||||||||||||||| |||| ||||||||||||||    
T  32215 aaaataggaccaaattgatggctaaaacaaagataaataaccaatttaaaacgtttaa 32158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 173
Target Start/End: Complemental strand, 24812 - 24650
Alignment:
Q  10 gaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaa 109  Q
    ||||| |||||||||||||||||||||||||||||||| |||||   |||||||  ||| |||| ||||||||||  ||||||||||||   ||||||||    
T  24812 gaagaagaggaagaaagcaatataaattatgtgttggtgatacacttttagatctgatgcacct-ctttatccaatagtcttctttttaagagatttaaa 24714  T
Q  110 attaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaa 173  Q
    ||||||| ||||||| ||| | |||| ||||||||  ||||||| |||||| | ||||||||||    
T  24713 attaatataataggaccaactcgatggctaaaacattgataaataaccattatgaaacgtttaa 24650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 13561488 - 13561328
Alignment:
Q  19 gaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaa 118  Q
    ||||||||  |||||||||| |||||||| |||||   |||||||  |||||||| |||||||||||| ||||||||||   |  |||||||||||||||    
T  13561488 gaagaaagtgatataaattaggtgttggtgatacactattagatctgatggaccttctttatccaacgatcttctttttgaggagtttaaaattaataaa 13561389  T
Q  119 ataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagtta 179  Q
    |||||| |||||||||||||| |||||||||||| ||||||||| ||||||||||||||||    
T  13561388 ataggaccaaattgatgactataacaaagataaaagaccattttgaaacgtttaatagtta 13561328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 13562202 - 13562373
Alignment:
Q  19 gaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattgga-tttaaaattaataa 117  Q
    ||||||||  |||||||||| |||||||| |||||  ||||||||  ||||| || ||||||||||| ||||||||||| | ||| ||||||||||||||    
T  13562202 gaagaaagtgatataaattaggtgttggtgatacactgttagatctgatggatctcctttatccaacagtcttcttttt-taggagtttaaaattaataa 13562300  T
Q  118 aataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaatt 190  Q
    ||||||| |||||| |||||||||| ||||||||| ||||||||| ||||||||||||||||  |||||||||    
T  13562301 aataggaccaaatttatgactaaaataaagataaaggaccattttgaaacgtttaatagttaagggaccaatt 13562373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 40 - 188
Target Start/End: Original strand, 1757422 - 1757569
Alignment:
Q  40 gtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgacta 139  Q
    |||||||| ||||| ||||||||   ||| || |||||||||||||||||||||||||   |||||||||||||||||||||||| ||||| || ||| |    
T  1757422 gtgttggtgatacacggttagatatgatgaacttactttatccaacggtcttctttttgagggatttaaaattaataaaataggaccaaatcgacgacga 1757521  T
Q  140 aaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaa 188  Q
    |||||||||| || |||||  || ||||||||||||||||  |||||||    
T  1757522 aaacaaagat-aaggaccaaattgaaacgtttaatagttaagggaccaa 1757569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 10673819 - 10673647
Alignment:
Q  19 gaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaa 118  Q
    |||| ||| ||||||||||| ||| |||| |||||   ||||||   |||||||| |||||| ||||||||||||||||    | |||||||||||||||    
T  10673819 gaaggaaggaatataaattaggtggtggtgatacacctttagatatgatggacctcctttattcaacggtcttctttttgaaaggtttaaaattaataaa 10673720  T
Q  119 ataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaattc 191  Q
    ||||||  ||||||||||| |||||||| ||||| |||||  || ||||||||| ||||||  ||||||||||    
T  10673719 ataggactaaattgatgacgaaaacaaacataaaggaccaaattgaaacgtttattagttaagggaccaattc 10673647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 11724259 - 11724362
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaat 174  Q
    |||||||||||||||||||||||   ||||||||||| ||||||||| ||||||||||||||| ||||||||||| || |||||  || |||||||||||    
T  11724259 ctttatccaacggtcttcttttttagggatttaaaatcaataaaatatgatcaaattgatgacgaaaacaaagat-aaggaccaaattgaaacgtttaat 11724357  T
Q  175 agtta 179  Q
    |||||    
T  11724358 agtta 11724362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 24317256 - 24317094
Alignment:
Q  19 gaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaa 118  Q
    |||||||| ||||||||||| |||||| | |||||  ||||||| | ||||| ||  |||||||||||||||| |||  | |   ||||||||| |||||    
T  24317256 gaagaaagtaatataaattaggtgttgatgatacaccgttagatacgatggatctcttttatccaacggtcttttttagagt---tttaaaattgataaa 24317160  T
Q  119 ataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagagga 184  Q
    | |||||||||| |||| | ||||||||||||||||||||  || |||||||||||||||| ||||    
T  24317159 acaggatcaaatcgatggcgaaaacaaagataaatgaccaaattgaaacgtttaatagttaaagga 24317094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 179
Target Start/End: Complemental strand, 25438001 - 25437833
Alignment:
Q  10 gaagatgaggaagaaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaa 109  Q
    ||||| || |||||||| ||||||||||| | |||||| |||||   |||||| ||||||| ||  | ||| ||||||||||||||||      ||||||    
T  25438001 gaagaagatgaagaaagtaatataaattaggcgttggtgatacaccattagatgcaatggatctcttatattcaacggtcttctttttgagatgtttaaa 25437902  T
Q  110 attaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagtta 179  Q
    |||||||||||||||||| ||||||| | |||||||||||||| |||||  || ||||||||||||||||    
T  25437901 attaataaaataggatcagattgatggcgaaaacaaagataaa-gaccaaattgaaacgtttaatagtta 25437833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 70 - 190
Target Start/End: Original strand, 25439064 - 25439184
Alignment:
Q  70 acctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgt 169  Q
    |||| ||||||||||||||||||||||||   | ||||||||||||||||| ||| ||||||||| |  |||||||||||||| |||||  || ||||||    
T  25439064 acctcctttatccaacggtcttctttttaagaggtttaaaattaataaaattggaccaaattgataatgaaaacaaagataaaagaccaaattgaaacgt 25439163  T
Q  170 ttaatagttagaggaccaatt 190  Q
    || ||| ||| ||||||||||    
T  25439164 tttataattaaaggaccaatt 25439184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 75 - 188
Target Start/End: Original strand, 1692944 - 1693056
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaat 174  Q
    ||||||| |||||||||||||||  ||||||| ||||||||||||| ||| ||||| |||||| ||||||||||| || |||||  |||||| |||||||    
T  1692944 ctttatctaacggtcttcttttttatggatttcaaattaataaaattggaccaaatcgatgacgaaaacaaagat-aaggaccaaattaaaatgtttaat 1693042  T
Q  175 agttagaggaccaa 188  Q
    |||||  |||||||    
T  1693043 agttaagggaccaa 1693056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 188
Target Start/End: Complemental strand, 14174291 - 14174144
Alignment:
Q  40 gtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgacta 139  Q
    |||||||| ||||| ||||||||   ||| || | ||||||||||| ||||||||||||   |||||||||||||||||||||||  |||| |||||| |    
T  14174291 gtgttggtgatacacggttagatatgatgaacttcctttatccaactgtcttctttttaagagatttaaaattaataaaataggacaaaatcgatgacga 14174192  T
Q  140 aaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaa 188  Q
    ||||||||||||  || ||  || ||| ||||||||||||| |||||||    
T  14174191 aaacaaagataag-gatcaaattgaaaagtttaatagttagtggaccaa 14174144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 188
Target Start/End: Complemental strand, 14178827 - 14178680
Alignment:
Q  40 gtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgacta 139  Q
    |||||||| ||||| ||||||||   ||| || | ||||||||||| ||||||||||||   |||||||||||||||||||||||  |||| |||||| |    
T  14178827 gtgttggtgatacacggttagatatgatgaacttcctttatccaactgtcttctttttaagagatttaaaattaataaaataggacaaaatcgatgacga 14178728  T
Q  140 aaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaa 188  Q
    ||||||||||||  || ||  || ||| ||||||||||||| |||||||    
T  14178727 aaacaaagataag-gatcaaattgaaaagtttaatagttagtggaccaa 14178680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 188
Target Start/End: Original strand, 27108102 - 27108249
Alignment:
Q  40 gtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgacta 139  Q
    |||||||| ||||| ||||||||   ||| || | |||||||||||| ||||||||||  ||||||| |||||||||||||||||  |||| |||||  |    
T  27108102 gtgttggtgatacacggttagatatgatgaacttcctttatccaacgatcttcttttttatggatttcaaattaataaaataggactaaatcgatgatga 27108201  T
Q  140 aaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaa 188  Q
    |||||||||| || | |||  |||||||||||||||||||  |||||||    
T  27108202 aaacaaagat-aaggtccaaattaaaacgtttaatagttaagggaccaa 27108249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 188
Target Start/End: Original strand, 27149899 - 27150046
Alignment:
Q  40 gtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgacta 139  Q
    |||||||| ||||| ||||||||   ||| || | |||||||||||| ||||||||||  ||||||| |||||||||||||||||  |||| |||||  |    
T  27149899 gtgttggtgatacacggttagatatgatgaacttcctttatccaacgatcttcttttttatggatttcaaattaataaaataggactaaatcgatgatga 27149998  T
Q  140 aaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaa 188  Q
    |||||||||| || | |||  |||||||||||||||||||  |||||||    
T  27149999 aaacaaagat-aaggtccaaattaaaacgtttaatagttaagggaccaa 27150046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 108 - 191
Target Start/End: Original strand, 24318059 - 24318142
Alignment:
Q  108 aaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaattc 191  Q
    ||||||||||||| |||||||||||||||| |||||||||||||| |||||  |||||| |||||||| |||  ||||||||||    
T  24318059 aaattaataaaatgggatcaaattgatgacgaaaacaaagataaaggaccaaattaaaaagtttaataattaagggaccaattc 24318142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 27107333 - 27107258
Alignment:
Q  76 tttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataa 151  Q
    ||||||||| ||||| | ||||  ||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  27107333 tttatccaatggtctacatttttatggatttaaaattaataaaataggaccaaattgatgacgaaaacaaagataa 27107258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 27149139 - 27149064
Alignment:
Q  76 tttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataa 151  Q
    ||||||||| ||||| | ||||  ||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  27149139 tttatccaatggtctacatttttatggatttaaaattaataaaataggaccaaattgatgacgaaaacaaagataa 27149064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 1692224 - 1692150
Alignment:
Q  77 ttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataaa 152  Q
    |||||||| ||||| ||||||   |||||||||||||||||| ||||| |||||||||||| ||||||||||||||    
T  1692224 ttatccaatggtctacttttttagggatttaaaattaataaa-taggaccaaattgatgacgaaaacaaagataaa 1692150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 188
Target Start/End: Complemental strand, 682463 - 682306
Alignment:
Q  31 ataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttat-tggatttaaaattaataaaataggatcaaa 129  Q
    |||||| | |||||||| |||||  | ||||||  || |||||  ||||||||||||||| |||||| | |||||| ||||| ||||||||| || ||||    
T  682463 ataaatcaagtgttggtgatacacagctagatctgatagacctcatttatccaacggtctcctttttttgtggatt-aaaatgaataaaataagaccaaa 682365  T
Q  130 ttga-tgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaa 188  Q
    |||| |||   ||| || |||||||||||| |||  ||||||||||||||||||||||||    
T  682364 ttgaatgatggaaagaa-gataaatgaccaatttggaacgtttaatagttagaggaccaa 682306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 18230412 - 18230361
Alignment:
Q  139 aaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaatt 190  Q
    |||||||||||||| |||||  |||||||||||||| ||||| |||||||||    
T  18230412 aaaacaaagataaaggaccaaattaaaacgtttaatggttaggggaccaatt 18230361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 204691 - 204615
Alignment:
Q  75 ctttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataa 151  Q
    |||||||||| ||||| ||||||   |||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  204691 ctttatccaatggtctacttttttagggatttaaaattaataaaataggaccaaattgatgacgaaaacaaagataa 204615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 40 - 188
Target Start/End: Original strand, 205480 - 205627
Alignment:
Q  40 gtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgacta 139  Q
    |||||||| ||||| ||||||||   ||| || | |||||||||||||| || |||||  ||||||| |||||||||||||||||  |||| |||||| |    
T  205480 gtgttggtgatacacggttagatatgatgaacttcctttatccaacggtattattttttatggatttcaaattaataaaataggacgaaatcgatgacga 205579  T
Q  140 aaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaa 188  Q
    |||||||||| || |||||  || |||||||||||| |||  |||||||    
T  205580 aaacaaagat-aaggaccaaattgaaacgtttaataattaagggaccaa 205627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 76 - 151
Target Start/End: Original strand, 85040 - 85115
Alignment:
Q  76 tttatccaacggtcttctttttattggatttaaaattaataaaataggatcaaattgatgactaaaacaaagataa 151  Q
    ||||||||||||||||||||||   ||||||||||||||||||||| || |||||||||||| |||| ||||||||    
T  85040 tttatccaacggtcttcttttttagggatttaaaattaataaaatatgaccaaattgatgacaaaaataaagataa 85115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 188
Target Start/End: Complemental strand, 35588 - 35404
Alignment:
Q  4 gaagatgaagatgaggaag-aaagcaatataaattatgtgttggtaatacatggttagatccaatggacctactttatccaacggtcttctttttattgg 102  Q
    |||||||||||||| |||| |||| || |||||||| |||||||| |||||  ||||||||  ||  ||||  ||||||||| ||||| |||||||| ||    
T  35588 gaagatgaagatgatgaagaaaagtaaaataaattaggtgttggtgatacacagttagatctgataaacctcatttatccaatggtctcctttttatggg 35489  T
Q  103 atttaaaattaataaaataggatcaaattgatgactaaaacaaagataaatgaccattttaaaacgtttaatagttagaggaccaa 188  Q
      ||||||| ||||||||| || | ||||||  | |  ||  ||||||||  |||| |||||||||||||||||||||||||||||    
T  35488 tgttaaaatgaataaaatatga-ccaattgaataatggaaagaagataaagaaccaatttaaaacgtttaatagttagaggaccaa 35404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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