View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117_low_51 (Length: 227)
Name: NF0117_low_51
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117_low_51 |
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| [»] scaffold0157 (2 HSPs) |
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Alignment Details
Target: scaffold0157 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 105 - 186
Target Start/End: Original strand, 36092 - 36173
Alignment:
| Q |
105 |
aatgtgcgcatgaaaggaagactccatagccatgggtgtcacctccaaataagtattttattgaagtatccattatactata |
186 |
Q |
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| T |
36092 |
aatgtgcgcatgaaaggaagactccttagccatgggtgtcacctccaaataagtattttattgaagtatccattatactata |
36173 |
T |
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Target: scaffold0157; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 36042 - 36079
Alignment:
| Q |
48 |
ataagcaatgtcaattcaccaaaaaattggatattcac |
85 |
Q |
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| T |
36042 |
ataagcaatgtcaattcaccaaaaatttggatattcac |
36079 |
T |
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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 12484385 - 12484304
Alignment:
| Q |
105 |
aatgtgcgcatgaaaggaagactccatagccatgggtgtcacctccaaataagtattttattgaagtatccattatactata |
186 |
Q |
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| T |
12484385 |
aatgtgcgcatgaaaggaagactccttagccatgggtgtcacctccaaataagtattttattgaagtatccattatactata |
12484304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 103 - 186
Target Start/End: Complemental strand, 12465654 - 12465571
Alignment:
| Q |
103 |
gcaatgtgcgcatgaaaggaagactccatagccatgggtgtcacctccaaataagtattttattgaagtatccattatactata |
186 |
Q |
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| T |
12465654 |
gcaatgtgtgcatgaaagtaagactccttagccatgggtgtcacctcgaaataagtattttattgaaggatccataatactata |
12465571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 103 - 186
Target Start/End: Complemental strand, 12468281 - 12468198
Alignment:
| Q |
103 |
gcaatgtgcgcatgaaaggaagactccatagccatgggtgtcacctccaaataagtattttattgaagtatccattatactata |
186 |
Q |
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| T |
12468281 |
gcaatgtgtgcatgaaagtaagactccttagccataggtgtcacctcgaaataagtattttattgaaggatccataatactata |
12468198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 12484435 - 12484398
Alignment:
| Q |
48 |
ataagcaatgtcaattcaccaaaaaattggatattcac |
85 |
Q |
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| T |
12484435 |
ataagcaatgtcaattcaccaaaaatttggatattcac |
12484398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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