View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117_low_8 (Length: 501)
Name: NF0117_low_8
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 99 - 474
Target Start/End: Complemental strand, 15380667 - 15380293
Alignment:
| Q |
99 |
caaaacacattttgagttcagaattcccacttctttcattcacacttaccagttacatgaccaatccattaattgcatctttgtggagt-atattatttc |
197 |
Q |
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| T |
15380667 |
caaaacacattttgagttcagaattcccacttctttcatccacacttaccagttacatgaccaatccattaattgcatctttgtggagttatattatttc |
15380568 |
T |
|
| Q |
198 |
cctttctcactctctacatgtctctcattcactttccctagggaatctgcaaagccattgctgaatgactatacccaccaacaagnnnnnnnnnnnnnnn |
297 |
Q |
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| T |
15380567 |
cctttctcactctctacatgtctctcattcactttccctagggaatctgcaaagccattgctgaatgactatacccaccaacaagtaataataataacaa |
15380468 |
T |
|
| Q |
298 |
nnnnnnnnnaagctcacaactctcatgcaatattgtagtaatgtgccccatgactcttaagtcaattatgaaactcaaaaaccttctataataaaatttt |
397 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15380467 |
taataataaaagctcacaactcttatgcaatattgtagtaatgtgccccatgactc-taagtcaattatgaaactcaaaaaccttctataataaaatttt |
15380369 |
T |
|
| Q |
398 |
gaggtttctggacaaacttggaccaccaccttatttattttaagnnnnnnnncttcctttattagtactactgttca |
474 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
15380368 |
gaggtttctggacaaacttggaccaccaccttatttattttaag-tttttttcttcctttattagtactactgttca |
15380293 |
T |
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