View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117_low_9 (Length: 478)
Name: NF0117_low_9
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 146 - 448
Target Start/End: Original strand, 27847881 - 27848182
Alignment:
| Q |
146 |
atcttgaaaatatggtgttatgaacttgaggtcggaacatatactatcatgtaaattgtaattagagttttttgtcataaaaaatgtaaagtaattagag |
245 |
Q |
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| T |
27847881 |
atcttgaaaatatgatgttatgaacttgaggttggaacatatactatcatgtaaa--gtaattagagttttttgtcataaaaaatgtaaagtaattagag |
27847978 |
T |
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| Q |
246 |
ttaaaagctacaaattt-attttaaattaaaatcaattctaatcaacttcggtaaccnnnnnnnttctaatcaacttcgaattaaaattaattatataaa |
344 |
Q |
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| T |
27847979 |
ttaaaagctacaaattttattttaaattaaaatcaattctaatcaacttcggtaaccaaaaaaattctaataaacttcaaattaaaatcaattatataaa |
27848078 |
T |
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| Q |
345 |
caaaattctcaaaatgacttttaactttaccaaaaatggagtgaatcacttttgatcttattaggttaatacatacctctaaattcacttctgtcactct |
444 |
Q |
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| T |
27848079 |
caaaattctcaaaatcacttttaactttaccaaaaatggagtgaatcacttttgatcttattaggttaatacatacctctaaattcacttctgtcactct |
27848178 |
T |
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| Q |
445 |
caaa |
448 |
Q |
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|||| |
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| T |
27848179 |
caaa |
27848182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 27847736 - 27847782
Alignment:
| Q |
20 |
ggtacattaaaaaaatttacattttttaagaatcgagtgataaagat |
66 |
Q |
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| T |
27847736 |
ggtacattaaaaaaatttacattgtttgagaatcgagcaataaagat |
27847782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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