View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0118_low_1 (Length: 468)
Name: NF0118_low_1
Description: NF0118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0118_low_1 |
 | |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 30 - 460
Target Start/End: Original strand, 200155 - 200584
Alignment:
| Q |
30 |
aatacctcattactgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtctgcaaaccgaaacaccagaaggaagag |
129 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
200155 |
aatacctcattattgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtctgcaaaccgaaacaccagaaggaagag |
200254 |
T |
|
| Q |
130 |
gcagtccagttaacatnnnnnnnngcctagaaagtctagaaagcaattacagagacaacaaaaaccaaccaggcccttggccaaaaaactacccccagcc |
229 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
200255 |
gcagtccagttaacataaaaaaa-gcctagaaagtctagaaagcaactacagagacaacaaaaaccaaccagacccttggccaaaaaactacccccagcc |
200353 |
T |
|
| Q |
230 |
gtagcaggttagcaggccaggaacagcacctgaagtcgcaaccaaaccagccgcaaaaccataagaaacatgctttgaatgtcacaaaaaacataagaaa |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
200354 |
gtagcaggttagcaggccaggaacagcacctgaagctgcaaccaaaccagccgcaaaaccataagaaacatgctttgaatgttacaaaaaacataagaaa |
200453 |
T |
|
| Q |
330 |
tcatggcattgcaaatatagcttatatataactagttaaaactgaaatatagagtttatggaggataagagaacaacaaatccgaagcnnnnnnncaaca |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||| | |
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|
| T |
200454 |
tcatggcattgcaaatatagcttatatataactagttaaaactgaaatatatagtttatggaggataagtgaacaacaaatccgaagcaaaaaaacaaaa |
200553 |
T |
|
| Q |
430 |
taagtgaaccaaaaatacgagcagaattatc |
460 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |
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|
| T |
200554 |
taagtgaaccaaaaatacgagcataattatc |
200584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 30 - 460
Target Start/End: Original strand, 28948539 - 28948968
Alignment:
| Q |
30 |
aatacctcattactgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtctgcaaaccgaaacaccagaaggaagag |
129 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
28948539 |
aatacctcattattgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtttgcaaaccgaaacaccagaaggaagag |
28948638 |
T |
|
| Q |
130 |
gcagtccagttaacatnnnnnnnngcctagaaagtctagaaagcaattacagagacaacaaaaaccaaccaggcccttggccaaaaaactacccccagcc |
229 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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|
| T |
28948639 |
gcagtccagttaacataaaaaaat-cctagaaagtctagaaagcaattacagagacaaacaaaaccaaccaggcccttggccaaaaaactacccccaacc |
28948737 |
T |
|
| Q |
230 |
gtagcaggttagcaggccaggaacagcacctgaagtcgcaaccaaaccagccgcaaaaccataagaaacatgctttgaatgtcacaaaaaacataagaaa |
329 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28948738 |
gtagcaggttagcaggccaggaacagcagctgaagccgcaaccaaaccagccgcaaaaccataagaaacatgctttgaatgtcacaaaaaacataagaaa |
28948837 |
T |
|
| Q |
330 |
tcatggcattgcaaatatagcttatatataactagttaaaactgaaatatagagtttatggaggataagagaacaacaaatccgaagcnnnnnnncaaca |
429 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||| |
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|
| T |
28948838 |
tcatggcattacaaatatagcttatatataactagttaaaactgaaatatagagtttaaggaggataagtgaacaacaaatccgaagcaaaaaaacaaca |
28948937 |
T |
|
| Q |
430 |
taagtgaaccaaaaatacgagcagaattatc |
460 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |
|
|
| T |
28948938 |
taagtgaaccaaaaatacgagcataattatc |
28948968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 30 - 460
Target Start/End: Complemental strand, 22990934 - 22990514
Alignment:
| Q |
30 |
aatacctcattactgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtctgcaaaccgaaacaccagaaggaagag |
129 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22990934 |
aatacctcattattgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtctgcaaaccgaaacaccagaaggaagag |
22990835 |
T |
|
| Q |
130 |
gcagtccagttaacatnnnnnnnngcctagaaagtctagaaagcaattacagagacaacaaaaaccaaccaggcccttggccaaaaaactacccccagcc |
229 |
Q |
| |
|
|||||||||||||||| | |||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22990834 |
gcagtccagttaacataa----------aaaaagcctagaaagcaactacagagacaacaaaaaccaaccagacccttggccaaaaaactacccccagcc |
22990745 |
T |
|
| Q |
230 |
gtagcaggttagcaggccaggaacagcacctgaagtcgcaaccaaaccagccgcaaaaccataagaaacatgctttgaatgtcacaaaaaacataagaaa |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22990744 |
gtagcaggttagcaggccaggaacagcacctgaagccgcaaccaaaccagccgcaaaaccataagaaacatgctttgaatgttacaaaaaacataagaaa |
22990645 |
T |
|
| Q |
330 |
tcatggcattgcaaatatagcttatatataactagttaaaactgaaatatagagtttatggaggataagagaacaacaaatccgaagcnnnnnnncaaca |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| | |
|
|
| T |
22990644 |
tcatggcattgcaaatatagcttatatataactagttaaaactgaaatatagagtttatggaggataagtgaacaacaaatccgaagcaaaaaaacaaaa |
22990545 |
T |
|
| Q |
430 |
taagtgaaccaaaaatacgagcagaattatc |
460 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |
|
|
| T |
22990544 |
taagtgaaccaaaaatacgagcataattatc |
22990514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 30 - 311
Target Start/End: Original strand, 22703183 - 22703454
Alignment:
| Q |
30 |
aatacctcattactgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtctgcaaaccgaaacaccagaaggaagag |
129 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22703183 |
aatacctcattattgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtctgcaaaccgaaacaccagaaggaagag |
22703282 |
T |
|
| Q |
130 |
gcagtccagttaacatnnnnnnnngcctagaaagtctagaaagcaattacagagacaacaaaaaccaaccaggcccttggccaaaaaactacccccagcc |
229 |
Q |
| |
|
|||||||||||||||| | |||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22703283 |
gcagtccagttaacataa----------aaaaagcctagaaagcaactacagagacaacaaaaaccaaccagacccttggccaaaaaactacccccagcc |
22703372 |
T |
|
| Q |
230 |
gtagcaggttagcaggccaggaacagcacctgaagtcgcaaccaaaccagccgcaaaaccataagaaacatgctttgaatgt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22703373 |
gtagcaggttagcaggccaggaacagcacctgaagccgcaaccaaaccagccgcaaaaccataagaaacatgctttgaatgt |
22703454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 306 - 460
Target Start/End: Original strand, 22714557 - 22714711
Alignment:
| Q |
306 |
gaatgtcacaaaaaacataagaaatcatggcattgcaaatatagcttatatataactagttaaaactgaaatatagagtttatggaggataagagaacaa |
405 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22714557 |
gaatgttacaaaaaacataagaaatcatggcattgcaaatatagcttatatataactagttaaaactgaaatatagagtttatggaggataagtgaacaa |
22714656 |
T |
|
| Q |
406 |
caaatccgaagcnnnnnnncaacataagtgaaccaaaaatacgagcagaattatc |
460 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
22714657 |
caaatccgaagcaaaaaaacaaaataagtgaaccaaaaatacgagcataattatc |
22714711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 342 - 460
Target Start/End: Complemental strand, 20087992 - 20087873
Alignment:
| Q |
342 |
aaatatagcttatatataactagttaaaactgaaatatagagtttatggaggataagagaacaacaaatccgaa-gcnnnnnnncaacataagtgaacca |
440 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||| |||||||||| | | |||||||||||| ||| | |||||||||||||||| |
|
|
| T |
20087992 |
aaatagagcttatatataaccagttaaaactgaaatatagagcttatggaggacaggtgaacaacaaatctgaaggaaaaaaaacaacataagtgaacca |
20087893 |
T |
|
| Q |
441 |
aaaatacgagcagaattatc |
460 |
Q |
| |
|
||||||| |||| ||||||| |
|
|
| T |
20087892 |
aaaatacaagcataattatc |
20087873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 342 - 417
Target Start/End: Complemental strand, 5928219 - 5928144
Alignment:
| Q |
342 |
aaatatagcttatatataactagttaaaactgaaatatagagtttatggaggataagagaacaacaaatccgaagc |
417 |
Q |
| |
|
||||| |||||||||| ||| | |||||||||||||||||||||||| ||||||||| | |||||||||| ||||| |
|
|
| T |
5928219 |
aaatagagcttatatagaaccacttaaaactgaaatatagagtttattgaggataagtgcacaacaaatctgaagc |
5928144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 346
Target Start/End: Complemental strand, 5928378 - 5928350
Alignment:
| Q |
318 |
aaacataagaaatcatggcattgcaaata |
346 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5928378 |
aaacataagaaatcatggcattgcaaata |
5928350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 22808703 - 22808657
Alignment:
| Q |
98 |
atgtctgcaaaccgaaacaccagaaggaagaggcagtccagttaaca |
144 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22808703 |
atgtctgcagaccgaaacaccagaaggaagaggcagtccaattaaca |
22808657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Complemental strand, 22808392 - 22808357
Alignment:
| Q |
425 |
caacataagtgaaccaaaaatacgagcagaattatc |
460 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22808392 |
caacataagtgaaccaaaaatacgagcataattatc |
22808357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Original strand, 23362369 - 23362404
Alignment:
| Q |
425 |
caacataagtgaaccaaaaatacgagcagaattatc |
460 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23362369 |
caacataagtgaaccaaaaatacgagcataattatc |
23362404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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