View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0118_low_2 (Length: 366)
Name: NF0118_low_2
Description: NF0118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0118_low_2 |
 | |
|
| [»] scaffold0007 (2 HSPs) |
| | |
|
| [»] scaffold1598 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 30 - 295
Target Start/End: Complemental strand, 29535964 - 29535699
Alignment:
| Q |
30 |
aaaccaaagtggaacttctactcagctatatcccttactccttaatcttattagattgcaacagtttaaccctagaaatttggctccaaaattgcagcat |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29535964 |
aaaccaaagtggaacttctactcagctatatcccttactccttaatcttattaggttgcaacaatttaaccctagaaatttggctccaaaattgtagcat |
29535865 |
T |
|
| Q |
130 |
ttaatgctaaatgtgatgaccctaaaattttttggctctaaagtgtttgggaatttgaatttcaaattattttattggaacaaacctactagcacttacc |
229 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29535864 |
ttaatgctaaatgtgataaccctaaaattttttggctctaaagtgtttgggaatttgaatttcaaattattttattggaacatacctactagcacttacc |
29535765 |
T |
|
| Q |
230 |
gatatatgttattaataacaatgatatttttcaaagcaaaaatttaacagcaaaaaattgacccaa |
295 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29535764 |
aatatatgttattaataacaatgatattttccaaagcaaaaatttaacagcaaaaaatagacccaa |
29535699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 59 - 295
Target Start/End: Complemental strand, 29535699 - 29535469
Alignment:
| Q |
59 |
atcccttactccttaatcttattagattgcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaaatgtgatgaccctaaaatt |
158 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||| |||||||||| |||||||||||||||||| ||| ||| ||||||||| |
|
|
| T |
29535699 |
atcccttactccttaatcttattaggttgcaacaacttaaccctataaatttggcttcaaaattgcagcatttaa------atgagataaccctaaaaaa |
29535606 |
T |
|
| Q |
159 |
ttttggctctaaagtgtttgggaatttgaatttcaaattattttattggaacaaacctactagcacttaccgatatatgttattaataacaatgatattt |
258 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29535605 |
atttggctctaaagtgtttggaaatttgaatttcaaattattttattggaacatacctactagcacttaccaatatatgttattaataacaatgatattt |
29535506 |
T |
|
| Q |
259 |
ttcaaagcaaaaatttaacagcaaaaaattgacccaa |
295 |
Q |
| |
|
| |||||||||||||||||| |||||||| ||||||| |
|
|
| T |
29535505 |
tccaaagcaaaaatttaacaacaaaaaatagacccaa |
29535469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 59 - 274
Target Start/End: Complemental strand, 29535469 - 29535264
Alignment:
| Q |
59 |
atcccttactccttaatcttattagattgcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaaatgtgatgaccctaaaatt |
158 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||| ||| ||| ||||||||| |
|
|
| T |
29535469 |
atcccttactccttaatcttattaggttgcaacaacttaaccctataaatttggctccaaaattgcagcatttaa------atgagataaccctaaaaaa |
29535376 |
T |
|
| Q |
159 |
ttttggctctaaagtgtttgggaatttgaatttcaaattattttattggaacaaacctactagcacttaccgatatatgttattaataacaatgatattt |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
29535375 |
atttggctctaaagtgtttgggaatttgaatttcaaattattttattggaacaaacctactagcacttacc-at---tgttattaataacaatgatattt |
29535280 |
T |
|
| Q |
259 |
ttcaaagcaaaaattt |
274 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
29535279 |
tccaaagcaaaaattt |
29535264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 95 - 274
Target Start/End: Original strand, 29533847 - 29534019
Alignment:
| Q |
95 |
ttaaccctagaaatttggctccaaaattgcagcatttaatgctaaatgtgatgaccctaaaattttttggctctaaagtgtttgggaatttgaatttcaa |
194 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||| ||| ||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29533847 |
ttaaccctataaatttgtctccaaaattgcagcatttaa------atgagataaccctaaaaaaatttggctctaaagtgtttgggaatttgaatttcaa |
29533940 |
T |
|
| Q |
195 |
attattttattggaacaaacctactagcacttaccgatatatgttattaataacaatgatatttttcaaagcaaaaattt |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29533941 |
attattttattggaacaaacctactagcacttaccaatat-tgttattaataacaatgatattttccaaagcaaaaattt |
29534019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 296 - 355
Target Start/End: Complemental strand, 29535272 - 29535213
Alignment:
| Q |
296 |
caaaaatttgaccaagcccataaatcatatcaccactccctctttttcctcactctctct |
355 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29535272 |
caaaaatttgaccatgcccctaaatcatatcaccactccctctttttcctcactctctct |
29535213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 296 - 353
Target Start/End: Original strand, 29534011 - 29534068
Alignment:
| Q |
296 |
caaaaatttgaccaagcccataaatcatatcaccactccctctttttcctcactctct |
353 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29534011 |
caaaaatttgaccatgcccctaaatcatatcaccactccctctttttcctcactctct |
29534068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 5168955 - 5169036
Alignment:
| Q |
59 |
atcccttactccttaatcttattagatt-gcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaa |
139 |
Q |
| |
|
|||||||||||||||| || |||| || |||||| |||||||||| | |||| ||| |||| |||||||||||||||||| |
|
|
| T |
5168955 |
atcccttactccttaaagttgttaggttagcaacaatttaaccctaaatttttgcctctaaaactgcagcatttaatgctaa |
5169036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 907806 - 907747
Alignment:
| Q |
60 |
tcccttactccttaatcttattagat-tgcaacagtttaaccctagaaatttggctccaaa |
119 |
Q |
| |
|
|||||||||||||||| ||||||| | || |||| ||||||||||||||||||||||||| |
|
|
| T |
907806 |
tcccttactccttaatgttattaggtctggaaca-attaaccctagaaatttggctccaaa |
907747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 72 - 355
Target Start/End: Complemental strand, 51854575 - 51854292
Alignment:
| Q |
72 |
taatcttattagattgcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaaatgtgatgaccctaaaattttttggctctaaa |
171 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||| |||||| |||| ||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
51854575 |
taatcttattaggttgcaacaacttaaccctagaaatttggctccaagattgcaacattaaatgctaaatgagataaccctaaaattttttggctctaaa |
51854476 |
T |
|
| Q |
172 |
gtgtttgggaatttgaatttcaaattattttattggaacaaacctactagcacttaccgatatatgttattaataacaatgatatttttcaaagcaaaaa |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
51854475 |
gtgtttgggaatttgaatttcaaattattttattggaacaaacctactggcacttaccaatatatgttattaataacaatgatattttccaaagcaagaa |
51854376 |
T |
|
| Q |
272 |
tttaacagcaaaaaattgacccaacaaaaatttgaccaagcccataaatcatatcaccactccctctttttcctcactctctct |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51854375 |
tttaacagcaaaaaattgacccaacaaaaatttgaccaagcccctaaatcatatcaccactccctctttttcctcactctctct |
51854292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 57 - 274
Target Start/End: Original strand, 42772456 - 42772673
Alignment:
| Q |
57 |
atatcccttactccttaatcttattagattgcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaaatgtgatgaccctaaaa |
156 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||| || ||| ||||||||| |
|
|
| T |
42772456 |
atatcccttactccttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataaccctaaaa |
42772555 |
T |
|
| Q |
157 |
ttttttggctctaaagtgtttgggaatttgaatttcaaattattttattggaacaaacctactagcacttaccgatatatgttattaataacaatgatat |
256 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
42772556 |
aaaattggccctaaagtgtttgggaatttgaatttcaaattattttattggaacaaacctactagcatttaccaatatatgttattaataacaatgatat |
42772655 |
T |
|
| Q |
257 |
ttttcaaagcaaaaattt |
274 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
42772656 |
tttccaaagcaaaaattt |
42772673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 60 - 274
Target Start/End: Complemental strand, 47914677 - 47914463
Alignment:
| Q |
60 |
tcccttactccttaatcttattagattgcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaaatgtgatgaccctaaaattt |
159 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||| |||||||| || ||| ||||||||| | |
|
|
| T |
47914677 |
tcccttactccttaatcttattaggttgcaacaacttaaccttagaaatttggctccaaaattgcagcattaaatgctaagtgagataaccctaaaaata |
47914578 |
T |
|
| Q |
160 |
tttggctctaaagtgtttgggaatttgaatttcaaattattttattggaacaaacctactagcacttaccgatatatgttattaataacaatgatatttt |
259 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47914577 |
tctgcctctaaagtgtttgggaatttgaatttcaaattattttataggaacaaacctattagcatttaccaatatatgttattaataacaatgatatttt |
47914478 |
T |
|
| Q |
260 |
tcaaagcaaaaattt |
274 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
47914477 |
ccaaagcaaaaattt |
47914463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 74 - 274
Target Start/End: Complemental strand, 28238252 - 28238053
Alignment:
| Q |
74 |
atcttattagattgcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaaatgtgatgaccctaaaattttttggctctaaagt |
173 |
Q |
| |
|
|||||||||| |||||||| |||||| ||||||||||||||||||||||||||||| |||||||| || ||| ||||||||| |||||| ||||||| |
|
|
| T |
28238252 |
atcttattaggttgcaacaacttaaccttagaaatttggctccaaaattgcagcattaaatgctaagtgagataaccctaaaaaaatttggccctaaagt |
28238153 |
T |
|
| Q |
174 |
gtttgggaatttgaatttcaaattattttattggaacaaacctactagcacttaccgatatatgttattaataacaatgatatttttcaaagcaaaaatt |
273 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28238152 |
gtttggaaatttaaatttcaaattattttattggaacaaacctactagcatttaccaatatatgttattaataacaatgata-ttttcaaagcaaaaatt |
28238054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 57 - 179
Target Start/End: Original strand, 23260951 - 23261073
Alignment:
| Q |
57 |
atatcccttactccttaatcttattagattgcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaaatgtgatgaccctaaaa |
156 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||| || ||| ||||| ||| |
|
|
| T |
23260951 |
atatcccttactccttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataacccttaaa |
23261050 |
T |
|
| Q |
157 |
ttttttggctctaaagtgtttgg |
179 |
Q |
| |
|
|||||||| ||||| ||||| |
|
|
| T |
23261051 |
aaatttggctccaaagtatttgg |
23261073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 60 - 355
Target Start/End: Complemental strand, 14175785 - 14175490
Alignment:
| Q |
60 |
tcccttactccttaatcttattagattgcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaaatgtgatgaccctaaaattt |
159 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| ||| |
|
|
| T |
14175785 |
tcccttactccttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaaatgagataaccctaaa-ttt |
14175687 |
T |
|
| Q |
160 |
tttggctctaaagtgtttgggaatttgaatttcaaattattttattggaacaaacctactagcacttaccgatatatgttattaataacaatgatatttt |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| |
|
|
| T |
14175686 |
tttggctctaaagtgtttgggaatttgaatttcaaattattttattggaacaaacctactagcatttatcaatatatgttattaataacaatgatatttt |
14175587 |
T |
|
| Q |
260 |
tcaaagcaaaaatttaac-agcaaaaaattgacccaacaaaaatttgaccaagcccataaatcatatcaccactccctctttttcctcactctctct |
355 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175586 |
ccaaagcaaaaatttaacaagcaaaaaattaaccgaacaaaaatttgaccaagctcctaaatcatatcaccactccctctttttcctcactctctct |
14175490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 57 - 355
Target Start/End: Original strand, 54418905 - 54419189
Alignment:
| Q |
57 |
atatcccttactccttaatcttattagattgcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaaatgtgatgaccctaaaa |
156 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| |
|
|
| T |
54418905 |
atatcccttactccttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaaatgagataaccctaaat |
54419004 |
T |
|
| Q |
157 |
ttttttggctctaaagtgtttgggaatttgaatttcaaattattttattggaacaaacctactagcacttaccgatatatgttattaataacaatgatat |
256 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
54419005 |
ttttttggctctaaagtgtttgagaatttgaatttcaaattattttattggaacaaacctactagcacttaccaatatatgttattaatatcaatgatat |
54419104 |
T |
|
| Q |
257 |
ttttcaaagcaaaaatttaacagcaaaaaattgacccaacaaaaatttgaccaagcccataaatcatatcaccactccctctttttcctcactctctct |
355 |
Q |
| |
|
|| ||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
54419105 |
attccaa--------------agcaaaaaattgacctaacaaaaatttgaccaagcccttaaatcatatcaccagtccctctttttcctccctctctct |
54419189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 59 - 292
Target Start/End: Complemental strand, 953104 - 952874
Alignment:
| Q |
59 |
atcccttactccttaatcttattagattgcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaaatgtgatgaccctaaaatt |
158 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||||||| |||| |||||| ||||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
953104 |
atcccttactccttaatcttattaggttgcaacaacttaaccctagaaatttagctcaaaaattacagcattaaatgctaaatgagataaccctaaaatt |
953005 |
T |
|
| Q |
159 |
ttttggctctaaagtgtttgggaatttgaatttcaaattattttattggaacaaacctactagcacttaccgatatatgttattaataacaatgatattt |
258 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
953004 |
ttttggctataaagtgtttgggaatttgaatttcaaattattttattg---aaaacctactagcacttaccaatatatgttattaataacaatgatattt |
952908 |
T |
|
| Q |
259 |
ttcaaagcaaaaatttaacagcaaaaaattgacc |
292 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |
|
|
| T |
952907 |
tccaaagcaaaaatttaacagcaaaaaattgacc |
952874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 56 - 274
Target Start/End: Original strand, 41828184 - 41828402
Alignment:
| Q |
56 |
tatatcccttactccttaatcttattagattgcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaaatgtgatgaccctaaa |
155 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||| || ||| |||||||| |
|
|
| T |
41828184 |
tatatcccttactccttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataaccctaaa |
41828283 |
T |
|
| Q |
156 |
attttttggctctaaagtgtttgggaatttgaatttcaaattattttattggaacaaacctactagcacttaccgatatatgttattaataacaatgata |
255 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
41828284 |
aaaaattggccctaaagtgtttgggaatttgaatttcaaattattttattggaacaaacctactagcatttaccaatatatgttattaataacaatgata |
41828383 |
T |
|
| Q |
256 |
tttttcaaagcaaaaattt |
274 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
41828384 |
ttttccaaagcaaaaattt |
41828402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 62 - 236
Target Start/End: Original strand, 41828013 - 41828188
Alignment:
| Q |
62 |
ccttactccttaatcttattagattgcaacagtttaa-ccctagaaatttggctccaaaattgcagcatttaatgctaaatgtgatgaccctaaaatttt |
160 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||| ||||| |||||||||||||||||| || |||| |||||||| || ||| ||||||||| | |
|
|
| T |
41828013 |
ccttactccttaatcttattaggttgcaacaacttaaaccctaaaaatttggctccaaaattacaacattaaatgctaagtgagataaccctaaaaaaat |
41828112 |
T |
|
| Q |
161 |
ttggctctaaagtgtttgggaatttgaatttcaaattattttattggaacaaacctactagcacttaccgatatat |
236 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
41828113 |
ttggccctaaagtgtttgggaatttgaatttcaaattattttattggaacaaacctactagcatttaccaatatat |
41828188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 50833912 - 50833956
Alignment:
| Q |
225 |
ttaccgatatatgttattaataacaatgatatttttcaaagcaaa |
269 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
50833912 |
ttaccaatatatgttattaataacaatgatattttccaaagcaaa |
50833956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 50841941 - 50841897
Alignment:
| Q |
225 |
ttaccgatatatgttattaataacaatgatatttttcaaagcaaa |
269 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
50841941 |
ttaccaatatatgttattaataacaatgatattttccaaagcaaa |
50841897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 9640246 - 9640327
Alignment:
| Q |
59 |
atcccttactccttaatcttattagatt-gcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaa |
139 |
Q |
| |
|
|||||||||||||||| || |||| || |||||| ||||||||| | |||||||| |||| |||||||||||||||||| |
|
|
| T |
9640246 |
atcccttactccttaaagttgttaggttagcaacaacttaaccctaaatttttggctctaaaaatgcagcatttaatgctaa |
9640327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 48761239 - 48761320
Alignment:
| Q |
59 |
atcccttactccttaatcttattagatt-gcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaa |
139 |
Q |
| |
|
|||||||||||||||| || |||| || |||||| |||||||||| | |||| ||| |||| |||||||||||||||||| |
|
|
| T |
48761239 |
atcccttactccttaaagttgttaggttagcaacaatttaaccctaaatttttgcctctaaaactgcagcatttaatgctaa |
48761320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 59 - 338
Target Start/End: Original strand, 6980520 - 6980798
Alignment:
| Q |
59 |
atcccttactccttaatcttattagattgcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaaatgtgatgaccctaaaatt |
158 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||| || ||||||||||||||| |||||||||| |||| |||||| ||| ||| |||| || |
|
|
| T |
6980520 |
atcccttactccttaatcttattaggttgcaacaatttaaccttaaaaatttggctccaaagttgcagcattaaatgttaaatgagataacc-taaattt |
6980618 |
T |
|
| Q |
159 |
ttttggctctaaagtgtttgggaatttgaatttcaaattattttattggaacaaacctactagcacttaccgatatatgttattaataacaatgatattt |
258 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
6980619 |
ttttggctctaaagtgtttgagaattggaatttcaaattattttattggatcaaacctactagcacttaccaatatatgttattaatatcaatgatattt |
6980718 |
T |
|
| Q |
259 |
ttcaaagcaaaaatttaacagcaaaaaattgacccaacaaaaatttgaccaagcccataaatcatatcaccactccctct |
338 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
6980719 |
tccaaagcaaaaatttaacagcaaaaaattgacctaacaaaaatttgaccaagcccttaaatcatatcaccagtccctct |
6980798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 63 - 156
Target Start/End: Complemental strand, 16032689 - 16032596
Alignment:
| Q |
63 |
cttactccttaatcttattagattgcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaaatgtgatgaccctaaaa |
156 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||| |
|
|
| T |
16032689 |
cttactccttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaaatgagataaccctaaaa |
16032596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 58 - 179
Target Start/End: Complemental strand, 56478988 - 56478867
Alignment:
| Q |
58 |
tatcccttactccttaatcttattagattgcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaaatgtgatgaccctaaaat |
157 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| | |||||||| || ||| ||||| ||| |
|
|
| T |
56478988 |
tatcccttactccttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgcagcactaaatgctaagtgagataacccttaaaa |
56478889 |
T |
|
| Q |
158 |
tttttggctctaaagtgtttgg |
179 |
Q |
| |
|
|||||||| ||||| ||||| |
|
|
| T |
56478888 |
aatttggctccaaagtatttgg |
56478867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 37342072 - 37341992
Alignment:
| Q |
59 |
atcccttactccttaatcttattagattgcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaa |
139 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| | ||||||||| | |||||| ||||| | |||||| |||||||||| |
|
|
| T |
37342072 |
atcccttactcattaatcttattaggttgcaataacttaaccctaaagatttggagccaaattagcagcaattaatgctaa |
37341992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 59 - 278
Target Start/End: Complemental strand, 43800492 - 43800273
Alignment:
| Q |
59 |
atcccttactccttaatcttattagattgcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaaatgtgatgaccctaaaatt |
158 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| ||||||||| ||| |||| |||||| ||| ||||||||||| |
|
|
| T |
43800492 |
atcccttactccttaatcttattaggttgcaacaacttaaccctagaaatttgactccgaaattgcagtattaaatgttaaatgagataaccctaaaatt |
43800393 |
T |
|
| Q |
159 |
ttttggctctaaagtgtttgggaatttgaatttcaaattattttattggaacaaacctactagcacttaccgatatatgttattaataacaatgatattt |
258 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43800392 |
ttttggctctaaagtgtgtgggaatttgaatttcaaattattttattggaacaaacctactagcacttaccaatatatgttattaataacaatgatattt |
43800293 |
T |
|
| Q |
259 |
ttcaaagcaaaaatttaaca |
278 |
Q |
| |
|
| || ||||||||||||||| |
|
|
| T |
43800292 |
tccacagcaaaaatttaaca |
43800273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 58 - 270
Target Start/End: Complemental strand, 9059951 - 9059739
Alignment:
| Q |
58 |
tatcccttactccttaatcttattagattgcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaaatgtgatgaccctaaaat |
157 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||| ||||||| ||| |||||||||||||| |||||||| || ||| |||||| || |
|
|
| T |
9059951 |
tatcccttactccttaatcttattaggttgcaacaacttaaccctaaaaatttgactctaaaattgcagcattaaatgctaagtgagataaccctacaaa |
9059852 |
T |
|
| Q |
158 |
tttttggctctaaagtgtttgggaatttgaatttcaaattattttattggaacaaacctactagcacttaccgatatatgttattaataacaatgatatt |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
9059851 |
aatttggctctaaagtgtttgggaatttgaatttcaaattattttattgaaacaaacctactagcatttaccaatatatgttattaataacaatgatatt |
9059752 |
T |
|
| Q |
258 |
tttcaaagcaaaa |
270 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
9059751 |
ttccaaagcaaaa |
9059739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 12447244 - 12447168
Alignment:
| Q |
63 |
cttactccttaatcttattagattgcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaa |
139 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12447244 |
cttactccttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaa |
12447168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 25890542 - 25890462
Alignment:
| Q |
59 |
atcccttactccttaatcttattagattgcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaa |
139 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||| | |||||| ||||| | |||||| |||||||||| |
|
|
| T |
25890542 |
atcccttactccttaatcttattaggttgcaacaacttaaccctaaagatttggagccaaattagcagcaattaatgctaa |
25890462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 4814602 - 4814683
Alignment:
| Q |
58 |
tatcccttactccttaatcttattagattgcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaa |
139 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| ||||||||| | |||||| ||||| | |||||| |||||||||| |
|
|
| T |
4814602 |
tatcccttactccttaattttattaggttgcaaacacttaaccctaaagatttggagccaaattagcagcaattaatgctaa |
4814683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 41750623 - 41750667
Alignment:
| Q |
95 |
ttaaccctagaaatttggctccaaaattgcagcatttaatgctaa |
139 |
Q |
| |
|
||||||||| | |||||||| ||||||||||||||||||||||| |
|
|
| T |
41750623 |
ttaaccctaaatttttggctctaaaattgcagcatttaatgctaa |
41750667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 59 - 274
Target Start/End: Original strand, 39444985 - 39445200
Alignment:
| Q |
59 |
atcccttactccttaatcttattagattgcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaaatgtgatgaccctaaaatt |
158 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||| || ||| ||||||||| |
|
|
| T |
39444985 |
atcccttactctttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataaccctaaaaaa |
39445084 |
T |
|
| Q |
159 |
ttttggctctaaagtgtttgggaatttgaatttcaaattattttattggaacaaacctactagcacttaccgatatatgttattaataacaatgatattt |
258 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
39445085 |
atttggccctaaagtgtttggaaatttgaatttcaaattattttattggaacaaacctactagcatttaccaatatatgttattaataacaatgatattt |
39445184 |
T |
|
| Q |
259 |
ttcaaagcaaaaattt |
274 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
39445185 |
tccaaagcaaaaattt |
39445200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 63 - 293
Target Start/End: Original strand, 40722602 - 40722833
Alignment:
| Q |
63 |
cttactccttaatcttattagattgcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaaatgtgatgaccctaaaatttt-t |
161 |
Q |
| |
|
||||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||| || ||| | ||||||| | |
|
|
| T |
40722602 |
cttactcctaaattttattaggttgcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataatcctaaaaaaaaat |
40722701 |
T |
|
| Q |
162 |
tggctctaaagtgtttgggaatttgaatttcaaattattttattggaacaaacctactagcacttaccgatatatgttattaataacaatgatatttttc |
261 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| |||||||||||||||||||||| | |
|
|
| T |
40722702 |
tggctctaaagtgtttggaaatttgaatttcaaattattttattcgaacaaacctactagcatttaccaatatatattattaataacaatgatattttcc |
40722801 |
T |
|
| Q |
262 |
aaagcaaaaatttaacagcaaaaaattgaccc |
293 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |
|
|
| T |
40722802 |
aaagcaaaaatttaacaacaaaaaattgaccc |
40722833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 85 - 250
Target Start/End: Original strand, 48829731 - 48829896
Alignment:
| Q |
85 |
ttgcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaaatgtgatgaccctaaaattttttggctctaaagtgtttgggaatt |
184 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |||||||| || ||| ||||||||| | | ||||||||||||||| ||||| |
|
|
| T |
48829731 |
ttgcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataaccctaaaaaaatctagctctaaagtgtttgagaatt |
48829830 |
T |
|
| Q |
185 |
tgaatttcaaattattttattggaacaaacctactagcacttaccgatatatgttattaataacaa |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||| |
|
|
| T |
48829831 |
tgaatttcaaattattttattggaacaaacctactagcatttcccaatatatgttattaataacaa |
48829896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 59 - 234
Target Start/End: Complemental strand, 85364 - 85197
Alignment:
| Q |
59 |
atcccttactccttaatcttattagattgcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaaatgtgatgaccctaaaatt |
158 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||| ||| |||||||| || ||| ||||||||| |
|
|
| T |
85364 |
atcccttactccttaatcttattaggttgcaacaacttaaccctagaattttggctccaaaattgcaatattaaatgctaagtgagataaccctaaaaaa |
85265 |
T |
|
| Q |
159 |
ttttggctctaaagtgtttgggaatttgaatttcaaattattttattggaacaaacctactagcacttaccgatat |
234 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
85264 |
ttttggctc--------ttgggaatttaaatttcaaattattttattggaacaaacctactagcatttaccaatat |
85197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 59 - 274
Target Start/End: Complemental strand, 29656992 - 29656777
Alignment:
| Q |
59 |
atcccttactccttaatcttattagattgcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaaatgtgatgaccctaaaatt |
158 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||| |||||||| || ||| |||||| || |
|
|
| T |
29656992 |
atcccttactctttaatcttattaggttgcaacaacttaaccctataaatttggctccaaaattgcagcattaaatgctaagtgagataaccctacaaaa |
29656893 |
T |
|
| Q |
159 |
ttttggctctaaagtgtttgggaatttgaatttcaaattattttattggaacaaacctactagcacttaccgatatatgttattaataacaatgatattt |
258 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
29656892 |
atttggccctaaagtgtttggaaatttgaatttcaaattattttattggaacaaacctactagcatttaccaatatatgttattaataacaatgatattt |
29656793 |
T |
|
| Q |
259 |
ttcaaagcaaaaattt |
274 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
29656792 |
tccaaagcaaaaattt |
29656777 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 10647797 - 10647715
Alignment:
| Q |
58 |
tatcccttactccttaatcttattagatt-gcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaa |
139 |
Q |
| |
|
||||||||||||||||| || |||| || |||||| ||||||||| | |||||||| |||| |||||||||||||||||| |
|
|
| T |
10647797 |
tatcccttactccttaaagttgttaggttagcaacaacttaaccctaaatttttggctctaaaactgcagcatttaatgctaa |
10647715 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 67 - 274
Target Start/End: Original strand, 252228 - 252435
Alignment:
| Q |
67 |
ctccttaatcttattagattgcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaaatgtgatgaccctaaaattttttggct |
166 |
Q |
| |
|
|||||||| |||||||| |||||||| |||| | ||||||||||| | ||||||||||||||| |||||||| || || ||||||||| ||||||| |
|
|
| T |
252228 |
ctccttaaacttattaggttgcaacaacttaatcatagaaatttggtttcaaaattgcagcattaaatgctaagtgatataaccctaaaaaaatttggct |
252327 |
T |
|
| Q |
167 |
ctaaagtgtttgggaatttgaatttcaaattattttattggaacaaacctactagcacttaccgatatatgttattaataacaatgatatttttcaaagc |
266 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
252328 |
ctaaagtgattgggaatttgaatttcaaattattttattgaaacaaacctactagcatttaccaatatatgttattaataacaatgatattttccaaagc |
252427 |
T |
|
| Q |
267 |
aaaaattt |
274 |
Q |
| |
|
|||||||| |
|
|
| T |
252428 |
aaaaattt |
252435 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 338
Target Start/End: Original strand, 252427 - 252469
Alignment:
| Q |
296 |
caaaaatttgaccaagcccataaatcatatcaccactccctct |
338 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
252427 |
caaaaatttgaccaagcccttaaatcatatcaccactctctct |
252469 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 95 - 274
Target Start/End: Complemental strand, 9375504 - 9375325
Alignment:
| Q |
95 |
ttaaccctagaaatttggctccaaaattgcagcatttaatgctaaatgtgatgaccctaaaattttttggctctaaagtgtttgggaatttgaatttcaa |
194 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| |||| |||||||| || ||| ||||||||| |||||| ||||||||||||| |||||||||||||| |
|
|
| T |
9375504 |
ttaatcctagaaatttggctccaaaactgcaacattaaatgctaagtgagataaccctaaaaaaatttggccctaaagtgtttggaaatttgaatttcaa |
9375405 |
T |
|
| Q |
195 |
attattttattggaacaaacctactagcacttaccgatatatgttattaataacaatgatatttttcaaagcaaaaattt |
274 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9375404 |
attattttattggaacaaacctactagcatttaccaatatatgttattaataacaatgatattttccaaagcaaaaattt |
9375325 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1598 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1598
Description:
Target: scaffold1598; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 176 - 257
Alignment:
| Q |
59 |
atcccttactccttaatcttattagatt-gcaacagtttaaccctagaaatttggctccaaaattgcagcatttaatgctaa |
139 |
Q |
| |
|
|||||||||||||||| || |||| || |||||| |||||||||| | |||| ||| |||| |||||||||||||||||| |
|
|
| T |
176 |
atcccttactccttaaagttgttaggttagcaacaatttaaccctaaatttttgcctctaaaactgcagcatttaatgctaa |
257 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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