View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0118_low_3 (Length: 354)
Name: NF0118_low_3
Description: NF0118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0118_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 30 - 354
Target Start/End: Original strand, 15953226 - 15953551
Alignment:
| Q |
30 |
gttaacaacaacattgtcctatttgttcgggaccaagaagccatgtgcgaaggagatcaaaggatgatgaagaggcgaaagatacacttaacctcattct |
129 |
Q |
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| T |
15953226 |
gttaacaacaacattgtcctatttgttcgggaccaagaagccatgtgtgaaggagatcaaaggatgatgaagaggcgaaagatacacttaacctcatact |
15953325 |
T |
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| Q |
130 |
acaatagcacgcttacttgagcaccaatgacttgaatcgaatgtctaacgccctcaa--acacacttgttgcgagaacaccaaaacttccacacacaaaa |
227 |
Q |
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| T |
15953326 |
acaatagcacgcatacttgagcaccaatgacgtgaatcgaatgtctaacgccctcaaacacacacttgttgcgagaacaccaaaacttccacaca-aaaa |
15953424 |
T |
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| Q |
228 |
aacacgccaaatggcaaaagacctcaccggcaccgccttggcgttttagccaataaacaaggcatgaagagcatgtctcaaatatgtactacaaatatgg |
327 |
Q |
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| T |
15953425 |
aacacgccaaatggcaaaagacctcaccggcaccgccttggcgttttagccaataaacaaggcatgaagtgcatgtctcaaatatgtactacaaatatgg |
15953524 |
T |
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| Q |
328 |
catgcatcggtagaaaacacgaccccc |
354 |
Q |
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| T |
15953525 |
catgcatcagtagaaaacaggaccccc |
15953551 |
T |
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