View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0118_low_4 (Length: 350)
Name: NF0118_low_4
Description: NF0118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0118_low_4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 249 - 350
Target Start/End: Original strand, 55319 - 55420
Alignment:
| Q |
249 |
attggctaattgaagcatcctctacagtttttcaactgtctagcaaaaaccaatctagaattgggaacctaaaatacgtatggaagaaccttcaggtgga |
348 |
Q |
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| T |
55319 |
attggctaattgaagcatcctctacagtttttcaactgtctagcaaaaaccaatctagaattgggaacctaaaatacctatggaagaaccttcaggtgga |
55418 |
T |
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| Q |
349 |
ca |
350 |
Q |
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|| |
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| T |
55419 |
ca |
55420 |
T |
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Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 55260 - 55322
Alignment:
| Q |
22 |
catcatcaattatatttaatagaaattgtggtagtagtaaacacaaatgttatagaactattg |
84 |
Q |
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| T |
55260 |
catcatcaattatatttaatagaaattgtggtagtagcaaacacaaatgttatagaactattg |
55322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 176 - 283
Target Start/End: Original strand, 33754949 - 33755056
Alignment:
| Q |
176 |
taatggatttgcagcttatgcgtcctaaaaaggttacattctacaaaatagtttttgtaagaaagttaaaatcattggctaattgaagcatcctctacag |
275 |
Q |
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| T |
33754949 |
taatgtatttgcagcttatgcgccctaaaaaggctacaacttaccgactagtttttgtaagaaagttaaaatctttggctaattgaagcatcctctacag |
33755048 |
T |
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| Q |
276 |
tttttcaa |
283 |
Q |
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| T |
33755049 |
tttttcaa |
33755056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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