View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0119-INSERTION-12 (Length: 467)

Name: NF0119-INSERTION-12
Description: NF0119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0119-INSERTION-12
NF0119-INSERTION-12
[»] chr8 (11 HSPs)
chr8 (135-467)||(11875015-11875341)
chr8 (6-137)||(11868871-11869002)
chr8 (7-137)||(11878945-11879075)
chr8 (7-137)||(11893952-11894082)
chr8 (7-137)||(11896361-11896491)
chr8 (7-137)||(11875336-11875466)
chr8 (373-455)||(11868783-11868865)
chr8 (134-213)||(11868711-11868790)
chr8 (394-467)||(11878877-11878950)
chr8 (394-467)||(11893884-11893957)
chr8 (394-467)||(11896293-11896366)
[»] chr5 (1 HSPs)
chr5 (7-137)||(25858990-25859120)
[»] chr4 (2 HSPs)
chr4 (179-220)||(2171727-2171768)
chr4 (179-219)||(41058867-41058907)


Alignment Details
Target: chr8 (Bit Score: 125; Significance: 3e-64; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 135 - 467
Target Start/End: Original strand, 11875015 - 11875341
Alignment:
Q  135 attctagtttgaagttaaaatcaattcagaagacaa--taaattatttttactcgaatacatccaaacatgtcaaaagcaattctacaccccaaactcaa 232  Q
    |||||||||||||||||||||||||||| | |||||  |||||||| | |  | |||||  |||||||||||||||| |||||||||||| |||||||||    
T  11875015 attctagtttgaagttaaaatcaattcacaggacaaaataaattatatctttttgaatatgtccaaacatgtcaaaatcaattctacaccacaaactcaa 11875114  T
Q  233 ttttacctcctctaaaaatggaatgaaacatacactaaatttaattcctatttttagatcatg--caaattcaaaatttagatatgctctatctacttct 330  Q
    ||||||||| |||||||| ||||||||||||||| |||||| |||  ||||||| ||||||||  ||||||||||||| ||||||  | | | |||||||    
T  11875115 ttttacctc-tctaaaaacggaatgaaacatacaataaattgaatcactatttt-agatcatgtgcaaattcaaaattcagatatattttgtgtacttct 11875212  T
Q  331 ttactaaggttgatgaccacatataagaaacatgaaaatggaaaaagaaaagataaatttgaactt----accaagatatctagttttccaaattgattc 426  Q
     ||  ||            || ||||||||||||||||||  |||||| |||||||||||||||||    ||||||||||||||||| ||||||||||||    
T  11875213 ctagaaa------------cacataagaaacatgaaaatgacaaaagacaagataaatttgaactttcttaccaagatatctagtttaccaaattgattc 11875300  T
Q  427 ttgataaaatctacaaatgatcttatacttgcatgatctat 467  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11875301 ttgataaaatctacaaatgatcttatacttgcatgatctat 11875341  T

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Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 6 - 137
Target Start/End: Original strand, 11868871 - 11869002
Alignment:
Q  6 catctatgacatcaagttgatgaaaaacaacaagaccaggcaaagaaagctgtttcagcttctcaacagcttcaagacctctcttttcatctcttgcagt 105  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11868871 catctatgacatcaagttgatgaaaaacaacaagaccaggcagagaaagatgtttcagcttctcaacagcttcaagacctctcttttcatctcttgcagt 11868970  T
Q  106 aagcaccacagtgatccctttagaagccaatt 137  Q
    ||||||||||||||||||||||||||||||||    
T  11868971 aagcaccacagtgatccctttagaagccaatt 11869002  T

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Target: chr8; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 11878945 - 11879075
Alignment:
Q  7 atctatgacatcaagttgatgaaaaacaacaagaccaggcaaagaaagctgtttcagcttctcaacagcttcaagacctctcttttcatctcttgcagta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  11878945 atctatgacatcaagttgatgaaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatctcttgcagta 11879044  T
Q  107 agcaccacagtgatccctttagaagccaatt 137  Q
    |||||||||||||||||||||||||||||||    
T  11879045 agcaccacagtgatccctttagaagccaatt 11879075  T

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Target: chr8; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 11893952 - 11894082
Alignment:
Q  7 atctatgacatcaagttgatgaaaaacaacaagaccaggcaaagaaagctgtttcagcttctcaacagcttcaagacctctcttttcatctcttgcagta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  11893952 atctatgacatcaagttgatgaaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatctcttgcagta 11894051  T
Q  107 agcaccacagtgatccctttagaagccaatt 137  Q
    |||||||||||||||||||||||||||||||    
T  11894052 agcaccacagtgatccctttagaagccaatt 11894082  T

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Target: chr8; HSP #5
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 11896361 - 11896491
Alignment:
Q  7 atctatgacatcaagttgatgaaaaacaacaagaccaggcaaagaaagctgtttcagcttctcaacagcttcaagacctctcttttcatctcttgcagta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  11896361 atctatgacatcaagttgatgaaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatctcttgcagta 11896460  T
Q  107 agcaccacagtgatccctttagaagccaatt 137  Q
    |||||||||||||||||||||||||||||||    
T  11896461 agcaccacagtgatccctttagaagccaatt 11896491  T

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Target: chr8; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 11875336 - 11875466
Alignment:
Q  7 atctatgacatcaagttgatgaaaaacaacaagaccaggcaaagaaagctgtttcagcttctcaacagcttcaagacctctcttttcatctcttgcagta 106  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  11875336 atctatgacatcaagttgttggaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatctcttgcagta 11875435  T
Q  107 agcaccacagtgatccctttagaagccaatt 137  Q
    |||||||||||||||||||||||||||||||    
T  11875436 agcaccacagtgatccctttagaagccaatt 11875466  T

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Target: chr8; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 373 - 455
Target Start/End: Original strand, 11868783 - 11868865
Alignment:
Q  373 aaaagaaaagataaatttgaacttaccaagatatctagttttccaaattgattcttgataaaatctacaaatgatcttatact 455  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11868783 aaaagcaaagataaatttgaacttaccaagatatctagttttccaaattgattcttgataaaatctacaaatgatcttatact 11868865  T

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Target: chr8; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 11868711 - 11868790
Alignment:
Q  134 aattctagtttgaagttaaaatcaattcagaagacaataaattatttttactcgaatacatccaaacatgtcaaaagcaa 213  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  11868711 aattctagtttgaagttaaaatcaattcataagacaataaattatttatactcgaatagatccaaacatgtcaaaagcaa 11868790  T

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Target: chr8; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 394 - 467
Target Start/End: Original strand, 11878877 - 11878950
Alignment:
Q  394 cttaccaagatatctagttttccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctat 467  Q
    |||||||| | |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11878877 cttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctat 11878950  T

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Target: chr8; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 394 - 467
Target Start/End: Original strand, 11893884 - 11893957
Alignment:
Q  394 cttaccaagatatctagttttccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctat 467  Q
    |||||||| | |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11893884 cttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctat 11893957  T

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Target: chr8; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 394 - 467
Target Start/End: Original strand, 11896293 - 11896366
Alignment:
Q  394 cttaccaagatatctagttttccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctat 467  Q
    |||||||| | |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11896293 cttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctat 11896366  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 25859120 - 25858990
Alignment:
Q  7 atctatgacatcaagttgatgaaaaacaacaagaccaggcaaagaaagctgtttcagcttctcaacagcttcaagacctctcttttcatctcttgcagta 106  Q
    ||||||||||||||||||||| ||||| ||| | ||||| |  | ||| |  ||||  || ||||||||||||||||||||||| ||||||||||| |      
T  25859120 atctatgacatcaagttgatggaaaaccacatggccaggaagtgcaagatccttcaatttatcaacagcttcaagacctctcttctcatctcttgctgcc 25859021  T
Q  107 agcaccacagtgatccctttagaagccaatt 137  Q
    ||||||||  |||| || |||||| ||||||    
T  25859020 agcaccactttgataccattagaaaccaatt 25858990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 2171768 - 2171727
Alignment:
Q  179 ttttactcgaatacatccaaacatgtcaaaagcaattctaca 220  Q
    ||||||||||  |||||||||||||||||||| |||||||||    
T  2171768 ttttactcgagaacatccaaacatgtcaaaagaaattctaca 2171727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 41058907 - 41058867
Alignment:
Q  179 ttttactcgaatacatccaaacatgtcaaaagcaattctac 219  Q
    ||||||||||| |||||||||||||||| || |||||||||    
T  41058907 ttttactcgaaaacatccaaacatgtcacaatcaattctac 41058867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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