View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0119-INSERTION-2 (Length: 320)
Name: NF0119-INSERTION-2
Description: NF0119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0119-INSERTION-2 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 92 - 320
Target Start/End: Complemental strand, 4223781 - 4223555
Alignment:
| Q |
92 |
ctctgattgcatggaatgatcagttggctctaaaatcactccaatttatagaactaatattttccttaaatgagaagtgaatgaattaaatttgctttga |
191 |
Q |
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||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4223781 |
ctctgattgcatggaatga---gttggctctaaaatcatttcaatttatagaactaatattttccttaaatgagaagtgaatgaaataaatttgctttga |
4223685 |
T |
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| Q |
192 |
gtggggaaaattattctcacaaatttgaagattgtgtgtgaatcatattg-ttaattaacatcacttttgattttcctttt-tgttgtgg-ttaaggtga |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| |||||||| ||||||||| |
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| T |
4223684 |
gtggggaaaattattctcacaaatttgaagattgtgtgtgaatcatagtgtttaattaatatcacttttgattttccttttatgttgtggtttaaggtga |
4223585 |
T |
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| Q |
289 |
tattgacttacattatttcttatattaattaa |
320 |
Q |
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| T |
4223584 |
tattgac-tagatt-tttcttatattaattaa |
4223555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 3925010 - 3925071
Alignment:
| Q |
121 |
ctaaaatcactccaatttatagaactaatattttccttaaatgagaagtgaatgaattaaat |
182 |
Q |
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| T |
3925010 |
ctaaaatcactccaatttataggactaattattaccttaaatgagaagtgaatcaattaaat |
3925071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 3931231 - 3931290
Alignment:
| Q |
123 |
aaaatcactccaatttatagaactaatattttccttaaatgagaagtgaatgaattaaat |
182 |
Q |
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| T |
3931231 |
aaaatcactccaatttataggattaattattaccttaaatgagaagtgaatcaattaaat |
3931290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 4053907 - 4053848
Alignment:
| Q |
123 |
aaaatcactccaatttatagaactaatattttccttaaatgagaagtgaatgaattaaat |
182 |
Q |
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| T |
4053907 |
aaaatcactccaatttataggactattgattaccttaaatgagaagtgaatcaattaaat |
4053848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 4215525 - 4215476
Alignment:
| Q |
131 |
tccaatttatagaactaatattttccttaaatgagaagtgaatgaattaa |
180 |
Q |
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| T |
4215525 |
tccaatttatagatctattgatttccttaaatgagaagtgaatgaattaa |
4215476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 4220003 - 4219933
Alignment:
| Q |
149 |
tattttccttaaatgagaagtgaatgaattaaatttg-ctttgagtggggaaaattattctcacaaatttgaa |
220 |
Q |
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| T |
4220003 |
tattttccttaaatga--agtgaatgaattaaatttgattttgcgtgaggaaaattattttcaaaaaattgaa |
4219933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 5388927 - 5388870
Alignment:
| Q |
128 |
cactccaatttatagaactaatattttccttaaatgagaagtgaatgaattaaatttg |
185 |
Q |
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| T |
5388927 |
cactgcaatttatcgaactaatgatttccttaaatgagaagtgaatgaattaaatttg |
5388870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 5398469 - 5398416
Alignment:
| Q |
128 |
cactccaatttatagaacta-atattttccttaaatgagaagtgaatgaattaa |
180 |
Q |
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| T |
5398469 |
cactccgatttatagaactatatgatttccttaaatgagaagtgaatgaattaa |
5398416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 11952603 - 11952648
Alignment:
| Q |
134 |
aatttatagaactaatattttccttaaatgagaagtgaatgaatta |
179 |
Q |
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| T |
11952603 |
aatttatagaactagtgatttccttaaatgagaagtgaatgaatta |
11952648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 13563811 - 13563761
Alignment:
| Q |
131 |
tccaatttatagaactaatattttccttaaatgagaagtgaatgaattaaa |
181 |
Q |
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|||||||||| |||||| | ||||||||||||| |||||||||| |||||| |
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| T |
13563811 |
tccaatttatggaactactgttttccttaaatgtgaagtgaatggattaaa |
13563761 |
T |
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