View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0119-INSERTION-4 (Length: 580)

Name: NF0119-INSERTION-4
Description: NF0119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0119-INSERTION-4
NF0119-INSERTION-4
[»] chr2 (37 HSPs)
chr2 (8-559)||(12017989-12018541)
chr2 (73-417)||(11986743-11987075)
chr2 (230-438)||(12011790-12011995)
chr2 (213-438)||(12005362-12005584)
chr2 (205-417)||(10336533-10336742)
chr2 (279-415)||(9329392-9329528)
chr2 (232-421)||(10348549-10348738)
chr2 (232-437)||(9283372-9283574)
chr2 (306-437)||(9316845-9316976)
chr2 (65-168)||(12005617-12005720)
chr2 (306-436)||(9292748-9292878)
chr2 (306-438)||(8572699-8572830)
chr2 (306-438)||(9060295-9060427)
chr2 (233-417)||(7114863-7115047)
chr2 (306-415)||(9321811-9321920)
chr2 (306-421)||(10372702-10372817)
chr2 (71-166)||(12012047-12012142)
chr2 (306-424)||(9357936-9358054)
chr2 (232-418)||(9275271-9275455)
chr2 (241-385)||(9365353-9365494)
chr2 (310-417)||(10353969-10354076)
chr2 (67-169)||(14550910-14551012)
chr2 (64-127)||(8579033-8579096)
chr2 (303-415)||(7612713-7612825)
chr2 (70-129)||(9365188-9365247)
chr2 (232-415)||(17565334-17565513)
chr2 (307-382)||(14551140-14551215)
chr2 (65-127)||(10336372-10336434)
chr2 (303-408)||(8578752-8578857)
chr2 (63-129)||(7612482-7612548)
chr2 (65-117)||(9275058-9275110)
chr2 (80-131)||(9316580-9316631)
chr2 (80-131)||(9329151-9329202)
chr2 (65-131)||(8573032-8573098)
chr2 (65-131)||(10348319-10348385)
chr2 (65-127)||(10372398-10372460)
chr2 (65-117)||(9283731-9283783)
[»] scaffold0667 (2 HSPs)
scaffold0667 (306-436)||(5279-5409)
scaffold0667 (71-131)||(5020-5080)
[»] chr3 (3 HSPs)
chr3 (306-437)||(37463342-37463473)
chr3 (230-417)||(39428631-39428809)
chr3 (69-131)||(37463039-37463101)
[»] chr5 (1 HSPs)
chr5 (228-417)||(36225490-36225681)
[»] chr1 (10 HSPs)
chr1 (67-168)||(29467283-29467384)
chr1 (81-172)||(29442813-29442904)
chr1 (68-165)||(29452812-29452909)
chr1 (306-400)||(29452586-29452680)
chr1 (311-400)||(29467060-29467149)
chr1 (65-168)||(29423802-29423905)
chr1 (311-437)||(29424039-29424165)
chr1 (306-382)||(29442612-29442688)
chr1 (65-108)||(29463510-29463553)
chr1 (9-38)||(29423734-29423763)
[»] chr4 (4 HSPs)
chr4 (310-417)||(26575703-26575810)
chr4 (230-382)||(561917-562066)
chr4 (91-129)||(561787-561825)
chr4 (66-131)||(26575411-26575476)
[»] chr8 (2 HSPs)
chr8 (310-429)||(41965928-41966047)
chr8 (65-127)||(41966254-41966316)
[»] chr7 (1 HSPs)
chr7 (304-400)||(45238747-45238843)


Alignment Details
Target: chr2 (Bit Score: 482; Significance: 0; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 8 - 559
Target Start/End: Complemental strand, 12018541 - 12017989
Alignment:
Q  8 aggatcaaaaccgaagccgtaaacgcaaaaggcaaattgcacattgctgtcagattgaggaatagggagatgagggataatccgatgtttacggatgtta 107  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12018541 aggatcaaaaccgaagccgtaaacgcaaaaggcaaattgcaaattgctgtcagattgaggaatagggagatgagggataatccgatgtttacggatgtaa 12018442  T
Q  108 gggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaaccgagaaggaatagggggatgcttttgctgttacgatgcgtga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12018441 gggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaaccgagaaggaatagggggatgcttttgctgttacgatgcgtga 12018342  T
Q  208 aaggatggttgactgtgatggcggtggttagggtagggaaatggagttggtagagatgggtgtcgtgacggaggatgaggttgaaattgagggatgagtt 307  Q
    |||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12018341 aaggatggttgagtgggatgacggtggttagggtagggaaatggagttggtagagatgggtgtcgtgacggaggatgaggttgaaattgagggatgagtt 12018242  T
Q  308 tttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaagcgggag 407  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  12018241 tttgagttgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcgaagaagtgattttactggtaagcgggag 12018142  T
Q  408 aagatttcggcgagtatgtctgacggaagaagataatccgacattggtaagaagatgattgtagggtttagggtgtttca-gaagaagaaggattgataa 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  12018141 aagatttcggcgagtatgtctgacggaagaagataatccgacattggtaagaagatgattgtagggtttagggtgtttcaggaagaagaagaattgataa 12018042  T
Q  507 ttgatttttgcatttgttatg-atgtgaccggaacgaaccactttctaaaactg 559  Q
    ||||||||||||||||||| | ||||||  |||||||||||| |||||||||||    
T  12018041 ttgatttttgcatttgttaagaatgtgagtggaacgaaccac-ttctaaaactg 12017989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 73 - 417
Target Start/End: Complemental strand, 11987075 - 11986743
Alignment:
Q  73 ggagatgagggataatccgatgtttacggatgttagggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaaccgagaag 172  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  11987075 ggagatgagggataatccgatgtttacgggtgttagggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaacc------ 11986982  T
Q  173 gaatagggggatgcttttgctgttacgatgcgtgaaaggatggttgactgtgatggcgg---tggttagggtagggaaatggagttggtagagatgggtg 269  Q
    ||| || | |||||  ||| ||| |         | ||| ||||||| || ||||||||   |||||||| |||||||||||||||| ||||||| ||||    
T  11986981 gaaaagtgcgatgcggttggtgtaa------aacagagggtggttgagtgggatggcggcggtggttaggttagggaaatggagttgatagagattggtg 11986888  T
Q  270 tcgtgacggaggatgaggttgaaattgagggatgagtttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgactttgaagttg 369  Q
    | ||||||||||||||||||||| ||   |   |||||| ||||||||||||||||||||||||||||||| |||||||||||||| || | ||||||||    
T  11986887 ttgtgacggaggatgaggttgaagtt---gtcagagtttctgaggtgaagattggtgaagttgtgagaatcaattatggatttaagcgattctgaagttg 11986791  T
Q  370 agcggaatcggagaagtgattttactggtaagcgggagaagatttcgg 417  Q
    ||||||||||||||||||||| |    |||||||||||||||||||||    
T  11986790 agcggaatcggagaagtgattgtggatgtaagcgggagaagatttcgg 11986743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 230 - 438
Target Start/End: Complemental strand, 12011995 - 12011790
Alignment:
Q  230 ggtggttagggtagggaaatggagttggtagagatgggtgtcgtgacggaggatgaggttgaaattgagggatgagtttttgaggtgaagattggtgaag 329  Q
    |||||||| | | |||||||||||||| ||||||| ||||| ||| ||||||||||||||||| ||| |    |||||||||||||||||||||||||||    
T  12011995 ggtggttaagttggggaaatggagttgatagagattggtgttgtggcggaggatgaggttgaagttgtg---agagtttttgaggtgaagattggtgaag 12011899  T
Q  330 ttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaagcgggagaagatttcggcgagtatgtctg 429  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |    ||||||||||||||||||||| |||||| ||||    
T  12011898 ttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcggagaagtgattgtggatgtaagcgggagaagatttcggtgagtatttctg 12011799  T
Q  430 acggaagaa 438  Q
    | |||||||    
T  12011798 aaggaagaa 12011790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 213 - 438
Target Start/End: Complemental strand, 12005584 - 12005362
Alignment:
Q  213 tggttgactgtgatggcggtggttagggtagggaaatggagttggtagagatgggtgtcgtgacggaggatgaggttgaaattgagggatgagtttttga 312  Q
    ||||||| || |||||||||||||||  ||||||||||||| ||| |||||| ||| | ||| | |||||| ||||||| |||||| ||    ||||| |    
T  12005584 tggttgagtgggatggcggtggttagattagggaaatggaggtggaagagattggttttgtggccgaggataaggttgagattgagagaa---tttttta 12005488  T
Q  313 ggtgaagattggtgaagttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaagcgggagaagat 412  Q
    | ||||| ||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| |   |||||||||||||||||    
T  12005487 gatgaaggttggtgaagttgtgagaatcgattatggatttaagcgattctgaagttgagcggaatcggagaagtgattgtggaggtaagcgggagaagat 12005388  T
Q  413 ttcggcgagtatgtctgacggaagaa 438  Q
    ||||| |||||| ||||| |||||||    
T  12005387 ttcggtgagtatttctgaaggaagaa 12005362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 205 - 417
Target Start/End: Original strand, 10336533 - 10336742
Alignment:
Q  205 tgaaaggatggttgactgtgatggcggtggttagggtagggaaatggagttggtagagatgggtgtcgtgacggaggatgaggttgaaattgagggatga 304  Q
    ||||||||||||||| ||  |  |||||||||||| ||||||||||||| |||||||| | ||| | | |||||||||||||||| |||||||||||       
T  10336533 tgaaaggatggttgagtggaacagcggtggttaggttagggaaatggaggtggtagaggtcggttttgcgacggaggatgaggttaaaattgagggaa-- 10336630  T
Q  305 gtttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaagcgg 404  Q
     ||||  |||||||| ||| |||| |||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||| |||    
T  10336631 -ttttgaaggtgaaggttgatgaatttgtgagaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaaacgg 10336729  T
Q  405 gagaagatttcgg 417  Q
    |||||||||||||    
T  10336730 gagaagatttcgg 10336742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 279 - 415
Target Start/End: Original strand, 9329392 - 9329528
Alignment:
Q  279 aggatgaggttgaaattgagggatgagtttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatc 378  Q
    |||||||||||||||||||||||    |||||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||    
T  9329392 aggatgaggttgaaattgagggaattatttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatc 9329491  T
Q  379 ggagaagtgattttactggtaagcgggagaagatttc 415  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  9329492 ggagaagtgattttaccggtaagcgggagaggatttc 9329528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 232 - 421
Target Start/End: Original strand, 10348549 - 10348738
Alignment:
Q  232 tggttagggtagggaaatggagttggtagagat---gggtgtcgtgacggaggatgaggttgaaattgagggatgagtttttgaggtgaagattggtgaa 328  Q
    |||||||| ||||||||||||||||||||| ||    ||||| |||||||||||||||||||||||| ||    || ||||| |||||||| ||| ||||    
T  10348549 tggttaggttagggaaatggagttggtagaaatcggtggtgttgtgacggaggatgaggttgaaatttag---agaattttttaggtgaaggttgatgaa 10348645  T
Q  329 gttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaagcgggagaagatttcggcgag 421  Q
     ||| | |||||||||| |||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10348646 tttgagggaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaagatttcggcgag 10348738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 232 - 437
Target Start/End: Complemental strand, 9283574 - 9283372
Alignment:
Q  232 tggttagggtagggaaatggagttggtagagatgggtgtcgtgacggaggatgaggttgaaattgagggatgagtttttgaggtgaagattggtgaagtt 331  Q
    |||||||| ||||||||| |||||||||||||| ||| | ||||||||||||||| ||||| ||||||||     ||||||||||||| ||| |||| ||    
T  9283574 tggttaggttagggaaatcgagttggtagagattggtcttgtgacggaggatgagtttgaagttgagggaac---ttttgaggtgaaggttgatgaattt 9283478  T
Q  332 gtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaagcgggagaagatttcggcgagtatgtctgac 431  Q
    ||||||||| |||| ||||  |||||| || |||||||| ||||||||||| |||||||| |||||||||| ||||||||||||||| |||||||| | |    
T  9283477 gtgagaatctattagggatcgaagtgatttagaagttgatcggaatcggagtagtgatttaactggtaagcaggagaagatttcggcaagtatgtccggc 9283378  T
Q  432 ggaaga 437  Q
    ||||||    
T  9283377 ggaaga 9283372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 306 - 437
Target Start/End: Original strand, 9316845 - 9316976
Alignment:
Q  306 tttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaagcggg 405  Q
    |||||||||||||| ||| |||||||||||||||| ||||  ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||    
T  9316845 tttttgaggtgaaggttgatgaagttgtgagaatctattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattttactggtaagtggg 9316944  T
Q  406 agaagatttcggcgagtatgtctgacggaaga 437  Q
    ||||||||||||||||||| || | |||||||    
T  9316945 agaagatttcggcgagtatttccggcggaaga 9316976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 65 - 168
Target Start/End: Complemental strand, 12005720 - 12005617
Alignment:
Q  65 aggaatagggagatgagggataatccgatgtttacggatgttagggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaa 164  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||   |||||||||||||||||||||||||||||||||    
T  12005720 aggaatagggagattagggataatccgatgtttacggatgttagggttccagaaagtgatttcggctttggaggaaatgcagaggaggccgttacatgaa 12005621  T
Q  165 ccga 168  Q
    ||||    
T  12005620 ccga 12005617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 306 - 436
Target Start/End: Original strand, 9292748 - 9292878
Alignment:
Q  306 tttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaagcggg 405  Q
    |||||||||||||| || |||||| ||||||||||||||| |||||||||||| |||||| |||| ||||||| |||||||||||||||||||| |||||    
T  9292748 tttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatctgagaagtgattttactggtacgcggg 9292847  T
Q  406 agaagatttcggcgagtatgtctgacggaag 436  Q
    ||||||||||||||| ||| |||| ||||||    
T  9292848 agaagatttcggcgactatttctggcggaag 9292878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 306 - 438
Target Start/End: Complemental strand, 8572830 - 8572699
Alignment:
Q  306 tttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaagcggg 405  Q
    |||||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||||| |||||    
T  8572830 tttttgaggtgaaggttggtgaagttgtgggaatcgattatagatttaagtgattttgaagttgatcggaatcggagaagtga-tttactggtatgcggg 8572732  T
Q  406 agaagatttcggcgagtatgtctgacggaagaa 438  Q
    |||||||||| | || ||| || ||||||||||    
T  8572731 agaagatttcagtgactatttccgacggaagaa 8572699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 306 - 438
Target Start/End: Complemental strand, 9060427 - 9060295
Alignment:
Q  306 tttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaagcggg 405  Q
    |||||||||| ||| || |||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||  || ||||||||||    
T  9060427 tttttgaggtaaaggttagtgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatcggaatcggagaagtgattgaaccggtaagcggg 9060328  T
Q  406 agaagatttcggcgagtatgtctgacggaagaa 438  Q
    ||||||||||||| ||||| || | ||||||||    
T  9060327 agaagatttcggcaagtatttccggcggaagaa 9060295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 233 - 417
Target Start/End: Complemental strand, 7115047 - 7114863
Alignment:
Q  233 ggttagggtagggaaatggagttggtagagatgggtgtc---gtgacggaggatgaggttgaaattgagggatgagtttttgaggtgaagattggtgaag 329  Q
    ||||||| |||||||||||||||||||||||| | |||    |||||||||||||| ||||||||||| |||    ||||| || ||||| ||| ||||     
T  7115047 ggttaggttagggaaatggagttggtagagatcgttgttcttgtgacggaggatgaagttgaaattgaaggaa---tttttaagatgaaggttgatgaat 7114951  T
Q  330 ttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaagcgggagaagatttcgg 417  Q
    ||||| |||||||||| |||||||||||| ||||||||||| |||||||| |||||||||  |||||||| ||| |||||||||||||    
T  7114950 ttgtgggaatcgattaaggatttaagtgattttgaagttgatcggaatcgaagaagtgatcgtactggtaggcgagagaagatttcgg 7114863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 306 - 415
Target Start/End: Original strand, 9321811 - 9321920
Alignment:
Q  306 tttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaagcggg 405  Q
    |||||||| ||||| ||| |||||| ||||||||||||||||||||||||||| || |||||||| |||||| |||||||||||||||| ||||||||||    
T  9321811 tttttgagatgaaggttgatgaagtggtgagaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcggg 9321910  T
Q  406 agaagatttc 415  Q
    ||| ||||||    
T  9321911 agaggatttc 9321920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 306 - 421
Target Start/End: Original strand, 10372702 - 10372817
Alignment:
Q  306 tttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaagcggg 405  Q
    |||| ||||||||| ||| |||| ||||| ||||||||||  ||||||| ||| ||||||||||| ||||||||||||||||||||||| ||||||||||    
T  10372702 ttttggaggtgaaggttgatgaatttgtgggaatcgattaatgatttaaatgattttgaagttgatcggaatcggagaagtgattttaccggtaagcggg 10372801  T
Q  406 agaagatttcggcgag 421  Q
    |||||| |||||||||    
T  10372802 agaagacttcggcgag 10372817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 12012142 - 12012047
Alignment:
Q  71 agggagatgagggataatccgatgtttacggatgttagggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaacc 166  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||| ||||||||||||||||||    
T  12012142 agggagattagggataatctgatgtttacggatgttagggttccagaacgcggtttcggtgtttgaggaaatgcagatgaggccgttacatgaacc 12012047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 306 - 424
Target Start/End: Original strand, 9357936 - 9358054
Alignment:
Q  306 tttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaagcggg 405  Q
    |||||||||||||| ||  ||||||||||||||||||||| |||||||||||| ||||||||||| |  || |||||||||||||||||||||||||||     
T  9357936 tttttgaggtgaaggtttatgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcgga 9358035  T
Q  406 agaagatttcggcgagtat 424  Q
    | || |||| |||||||||    
T  9358036 acaaaattttggcgagtat 9358054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 232 - 418
Target Start/End: Original strand, 9275271 - 9275455
Alignment:
Q  232 tggttagggtagggaaatggagttggtagagat-gggtgtcgtgacggaggatgaggttgaaattgagggatgagtttttgaggtgaagattggtgaagt 330  Q
    |||||||| ||||||||| ||||| |||||| | |||||| |||  | || ||||||||||||||||||||    |||||||| ||||| ||| ||||||    
T  9275271 tggttaggttagggaaattgagttcgtagagtttgggtgttgtgttgaagaatgaggttgaaattgagggaa---tttttgagatgaaggttgatgaagt 9275367  T
Q  331 tgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaagcgggagaagatttcggc 418  Q
    |||| ||||| || |  ||||||||||| |||||  |||| ||||||| ||||||||||| ||||||||| |||||||||||||||||    
T  9275368 tgtgggaatcaatcaacgatttaagtgattttgagattgatcggaatcagagaagtgattgtactggtaaccgggagaagatttcggc 9275455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 241 - 385
Target Start/End: Original strand, 9365353 - 9365494
Alignment:
Q  241 tagggaaatggagttggtagagatgggtgtcgtgacggaggatgaggttgaaattgagggatgagtttttgaggtgaagattggtgaagttgtgagaatc 340  Q
    |||| |||| ||||||||||||||  | || ||| |||| |||||||| |||||||  |   ||||||||||| || || ||||||||| ||||||||||    
T  9365353 taggaaaatcgagttggtagagatttgcgttgtggcggatgatgaggtagaaattgttg---gagtttttgagatggaggttggtgaaggtgtgagaatc 9365449  T
Q  341 gattatggatttaagtgactttgaagttgagcggaatcggagaag 385  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||||    
T  9365450 gattatggatttaagtgattttgaggttgatcggaatcggagaag 9365494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 310 - 417
Target Start/End: Original strand, 10353969 - 10354076
Alignment:
Q  310 tgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaagcgggagaa 409  Q
    |||||||||| ||| |||| ||||  |||||||||| |||||||| ||| ||||||||||| ||||||| |||||||||| |||| ||||||||||| |     
T  10353969 tgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgggaaag 10354068  T
Q  410 gatttcgg 417  Q
    ||||||||    
T  10354069 gatttcgg 10354076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 14550910 - 14551012
Alignment:
Q  67 gaatagggagatgagggataatccgatgtttacggatgttagggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaacc 166  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| ||||||   |||||  | ||| |||| || ||||||||||||||    
T  14550910 gaatagggagatcagggataatgcgatgtttacggatgttagggttccataaagcaatttcgccattggaaaagatgtagagaagaccgttacatgaacc 14551009  T
Q  167 gag 169  Q
    |||    
T  14551010 gag 14551012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 8579096 - 8579033
Alignment:
Q  64 gaggaatagggagatgagggataatccgatgtttacggatgttagggttccagaaagcgatttc 127  Q
    ||||||| ||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||    
T  8579096 gaggaatggggagataagggataactcgatgtttacggatgttagggttccagaaagcgatttc 8579033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 415
Target Start/End: Original strand, 7612713 - 7612825
Alignment:
Q  303 gagtttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaagc 402  Q
    ||||||||||||||||| || ||||||||||| ||||| |||| ||||||||| || || ||| |||| ||||||||||| || | || ||| |||||||    
T  7612713 gagtttttgaggtgaaggtttgtgaagttgtgggaatcaattaaggatttaagcgatttagaaattgatcggaatcggaggagggtttgtaccggtaagc 7612812  T
Q  403 gggagaagatttc 415  Q
    | |||| ||||||    
T  7612813 gagagaggatttc 7612825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 9365188 - 9365247
Alignment:
Q  70 tagggagatgagggataatccgatgtttacggatgttagggttccagaaagcgatttcgt 129  Q
    |||| |||| |||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  9365188 taggaagataagggatgatccgatgtttacggatgttagggttccagaaagcgatatcgt 9365247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 415
Target Start/End: Complemental strand, 17565513 - 17565334
Alignment:
Q  232 tggttagggtagggaaatggagttggtagagatgggtgtcgtgacggaggatgaggttgaaattgagggatgagtttttgaggtgaagattggtgaagtt 331  Q
    |||||||| |||||||||  | ||||||||  | || || ||| ||||| |||||||||||||| |   | ||||||||| ||||||| |||||||||||    
T  17565513 tggttaggttagggaaatcaacttggtagaatttggagttgtggcggagaatgaggttgaaattta---aagagtttttg-ggtgaaggttggtgaagtt 17565418  T
Q  332 gtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaagcgggagaagatttc 415  Q
     || ||||| ||||   |||||||||| || || ||||| |||| |||||| || |||| |||||||||||| |||| ||||||    
T  17565417 atgggaatcaattaaaaatttaagtgatttcgacgttgatcggagtcggaggagggattgtactggtaagcgagagaggatttc 17565334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 14551140 - 14551215
Alignment:
Q  307 ttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggag 382  Q
    |||| |||||||| ||| |||||||||| |||||||||| ||||| |||||| ||||||||||| |||||| ||||    
T  14551140 tttttaggtgaagtttgatgaagttgtgggaatcgattagggattgaagtgattttgaagttgatcggaattggag 14551215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 65 - 127
Target Start/End: Original strand, 10336372 - 10336434
Alignment:
Q  65 aggaatagggagatgagggataatccgatgtttacggatgttagggttccagaaagcgatttc 127  Q
    ||||| |||||||| ||||||||||||||||||||||||| |||| || ||||| ||||||||    
T  10336372 aggaagagggagataagggataatccgatgtttacggatggtaggattacagaatgcgatttc 10336434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 408
Target Start/End: Complemental strand, 8578857 - 8578752
Alignment:
Q  303 gagtttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaagc 402  Q
    ||||||||||||| | | ||||||||| |||| ||||| || | ||||  |||||| || ||| |||| |||||||||||||| |||| ||| |||||||    
T  8578857 gagtttttgaggtaatgtttggtgaaggtgtgggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtaccggtaagc 8578758  T
Q  403 gggaga 408  Q
    ||||||    
T  8578757 gggaga 8578752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 7612482 - 7612548
Alignment:
Q  63 tgaggaatagggagatgagggataatccgatgtttacggatgttagggttccagaaagcgatttcgt 129  Q
    |||| ||||||||||| ||||||   || |||||||||||||||||||||||| |||||||| ||||    
T  7612482 tgagaaatagggagattagggatggccctatgtttacggatgttagggttccataaagcgatatcgt 7612548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 9275058 - 9275110
Alignment:
Q  65 aggaatagggagatgagggataatccgatgtttacggatgttagggttccaga 117  Q
    ||||| |||||||  |||||||||||||||||||| | |||||||||||||||    
T  9275058 aggaagagggagaaaagggataatccgatgtttaccggtgttagggttccaga 9275110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 9316580 - 9316631
Alignment:
Q  80 agggataatccgatgtttacggatgttagggttccagaaagcgatttcgttg 131  Q
    ||||||||| |||||||||||| |||||||||||||||  | ||||||||||    
T  9316580 agggataatacgatgtttacgggtgttagggttccagattgtgatttcgttg 9316631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 9329151 - 9329202
Alignment:
Q  80 agggataatccgatgtttacggatgttagggttccagaaagcgatttcgttg 131  Q
    ||||||||| |||||||||||| |||||||||||||||  | ||||||||||    
T  9329151 agggataatacgatgtttacgggtgttagggttccagattgtgatttcgttg 9329202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 8573098 - 8573032
Alignment:
Q  65 aggaatagggagatgagggataatccgatgtttacggatgttagggttccagaaagcgatttcgttg 131  Q
    ||||| |||||||  |||||||||  ||||||||||| |||||||||||||||  ||||||| ||||    
T  8573098 aggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttg 8573032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 10348319 - 10348385
Alignment:
Q  65 aggaatagggagatgagggataatccgatgtttacggatgttagggttccagaaagcgatttcgttg 131  Q
    ||||| |||||||  |||||||||  ||||||||||| |||||||||||||||  | ||||||||||    
T  10348319 aggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttg 10348385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 127
Target Start/End: Original strand, 10372398 - 10372460
Alignment:
Q  65 aggaatagggagatgagggataatccgatgtttacggatgttagggttccagaaagcgatttc 127  Q
    ||||| |||||||  |||||||| || |||||||||| |||||||||||||||| | ||||||    
T  10372398 aggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttc 10372460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 9283783 - 9283731
Alignment:
Q  65 aggaatagggagatgagggataatccgatgtttacggatgttagggttccaga 117  Q
    ||||| |||||||  ||||||||||| |||||||||| |||||| ||||||||    
T  9283783 aggaagagggagaaaagggataatccaatgtttacgggtgttagtgttccaga 9283731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 91; Significance: 8e-44; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 306 - 436
Target Start/End: Original strand, 5279 - 5409
Alignment:
Q  306 tttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaagcggg 405  Q
    |||||| ||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||    
T  5279 tttttgcggtgaaggttgatgaagttgtgagaatcgattatggatttaagtgattttgaagttgatcggaatcggagaagtgattttaccggtaagcggg 5378  T
Q  406 agaagatttcggcgagtatgtctgacggaag 436  Q
    |||||||||| |||||| |||| | ||||||    
T  5379 agaagatttctgcgagtgtgtccggcggaag 5409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 5020 - 5080
Alignment:
Q  71 agggagatgagggataatccgatgtttacggatgttagggttccagaaagcgatttcgttg 131  Q
    |||||||  |||||||||  |||||||||||||||||||||||||||  | ||||||||||    
T  5020 agggagaaaagggataatgtgatgtttacggatgttagggttccagattgtgatttcgttg 5080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 306 - 437
Target Start/End: Original strand, 37463342 - 37463473
Alignment:
Q  306 tttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaagcggg 405  Q
    |||||||| ||||| ||| |||||||||||||||||||||  ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||    
T  37463342 tttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctactggtaaacggg 37463441  T
Q  406 agaagatttcggcgagtatgtctgacggaaga 437  Q
    ||| ||||||||||||||| || | |||||||    
T  37463442 agaggatttcggcgagtatttccggcggaaga 37463473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 230 - 417
Target Start/End: Original strand, 39428631 - 39428809
Alignment:
Q  230 ggtggttagggtagggaaatggagttggtagagatgggtgtcgtgacggaggatgaggttgaaattgagggatgagtttttgaggtgaagattggtgaag 329  Q
    |||||||||| ||||||||| |||||||||||||| |  || ||| || |||||||||||||| ||||||    |||||||||||||||     ||||||    
T  39428631 ggtggttaggttagggaaatcgagttggtagagattgcagttgtggcgaaggatgaggttgaagttgagg---tagtttttgaggtgaa-----gtgaag 39428722  T
Q  330 ttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaagcgggagaagatttcgg 417  Q
    ||||| |||| ||||| |||||||| | | ||||||||||| |||||| |||| || ||||  || ||||||||||||| ||||||||    
T  39428723 ttgtgggaat-gattaaggatttaactcattttgaagttgatcggaattggaggagggattgcaccggtaagcgggagaggatttcgg 39428809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 37463039 - 37463101
Alignment:
Q  69 atagggagatgagggataatccgatgtttacggatgttagggttccagaaagcgatttcgttg 131  Q
    |||||||||  |||||||||| ||||||||||  |||||||||||||||  | ||||||||||    
T  37463039 atagggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttg 37463101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 228 - 417
Target Start/End: Original strand, 36225490 - 36225681
Alignment:
Q  228 gcggtggttagggtagggaaatggagttggtagagatgggtgtcgtgacggaggatgaggttgaaattgagggatgagt--ttttgaggtgaagattggt 325  Q
    |||||||||||| |||||||||  ||||||||||| | ||| |  || || |||||||||||||| |||| |||    |  |||||||||||||||| ||    
T  36225490 gcggtggttaggttagggaaatcaagttggtagagtttggttttctggcgaaggatgaggttgaagttgaaggagttttaattttgaggtgaagattagt 36225589  T
Q  326 gaagttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaagcgggagaagatttcgg 417  Q
    ||||||||| ||||||||||  ||||||||||| ||||||||||| ||||||||||| || ||||  ||| |||||||||||| ||||||||    
T  36225590 gaagttgtgcgaatcgattaacgatttaagtgattttgaagttgatcggaatcggaggagggattgcactagtaagcgggagaggatttcgg 36225681  T

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Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 67 - 168
Target Start/End: Complemental strand, 29467384 - 29467283
Alignment:
Q  67 gaatagggagatgagggataatccgatgtttacggatgttagggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaacc 166  Q
    |||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||   |||  |||||||||||| |||||||||||||||||    
T  29467384 gaatagggagattaggaataatccgatgtttacggatgttaggattccagaaagcgattccgacattgatggaaatgcagagaaggccgttacatgaacc 29467285  T
Q  167 ga 168  Q
    ||    
T  29467284 ga 29467283  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 29442904 - 29442813
Alignment:
Q  81 gggataatccgatgtttacggatgttagggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaaccgagaag 172  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |    ||||||||||||||||| ||||||||||||||||| |||||    
T  29442904 gggataatccggtgtttacggatgttagggttccagaaagcgattccagcattggaggaaatgcagagaaggccgttacatgaacctagaag 29442813  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 29452909 - 29452812
Alignment:
Q  68 aatagggagatgagggataatccgatgtttacggatgttagggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaac 165  Q
    ||||||||||| ||| ||| || ||||||||||||||||||||||||||||||||||| ||   |||| || |||| |||| ||||||||||||||||    
T  29452909 aatagggagattaggaatattctgatgtttacggatgttagggttccagaaagcgattccgacattggtggtaatgaagagaaggccgttacatgaac 29452812  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 306 - 400
Target Start/End: Complemental strand, 29452680 - 29452586
Alignment:
Q  306 tttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaa 400  Q
    |||| ||||||||| ||| ||||||||||||||||||||| ||||| |||||| ||||| ||||| ||||||||||| || |||| ||| |||||    
T  29452680 ttttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcggaggagggattgtaccggtaa 29452586  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 400
Target Start/End: Complemental strand, 29467149 - 29467060
Alignment:
Q  311 gaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaa 400  Q
    ||||||||| ||| |||||||||| |||||||||| ||||| |||||| ||||| ||||| ||||||||||| || |||| ||| |||||    
T  29467149 gaggtgaagtttgatgaagttgtgggaatcgattagggattgaagtgattttgaggttgaacggaatcggaggagggattgtaccggtaa 29467060  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 168
Target Start/End: Original strand, 29423802 - 29423905
Alignment:
Q  65 aggaatagggagatgagggataatccgatgtttacggatgttagggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaa 164  Q
    ||||||||||||   ||||||||| |||||||||| |||| ||||||||||||||||||||||    | |||| | | |||||| ||||||||||||||     
T  29423802 aggaatagggagggaagggataatgcgatgtttacagatggtagggttccagaaagcgatttcaccatcggagaagaggcagagaaggccgttacatgat 29423901  T
Q  165 ccga 168  Q
    ||||    
T  29423902 ccga 29423905  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 437
Target Start/End: Original strand, 29424039 - 29424165
Alignment:
Q  311 gaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaagcgggagaag 410  Q
    ||||||||| ||| ||||| |||| ||||||||||  |||| |||||| ||||| ||||| ||||||||||| || |||| ||| |||||  | |||| |    
T  29424039 gaggtgaagcttgatgaagctgtgggaatcgattagagattgaagtgattttgaggttgaacggaatcggaggagggattgtaccggtaacagagagagg 29424138  T
Q  411 atttcggcgagtatgtctgacggaaga 437  Q
    ||| ||| |||||| || | |||||||    
T  29424139 attccggtgagtatctccggcggaaga 29424165  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 382
Target Start/End: Complemental strand, 29442688 - 29442612
Alignment:
Q  306 tttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggag 382  Q
    |||| ||||||||| ||| ||||||| || |||||||||| ||||| |||||| || || ||||| |||||||||||    
T  29442688 ttttggaggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggag 29442612  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 29463553 - 29463510
Alignment:
Q  65 aggaatagggagatgagggataatccgatgtttacggatgttag 108  Q
    |||||||||| ||| ||||||||||| |||||||||||||||||    
T  29463553 aggaatagggggataagggataatccaatgtttacggatgttag 29463510  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 38
Target Start/End: Original strand, 29423734 - 29423763
Alignment:
Q  9 ggatcaaaaccgaagccgtaaacgcaaaag 38  Q
    ||||||||||||||||||||||||||||||    
T  29423734 ggatcaaaaccgaagccgtaaacgcaaaag 29423763  T

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Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 310 - 417
Target Start/End: Original strand, 26575703 - 26575810
Alignment:
Q  310 tgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaagcgggagaa 409  Q
    |||||||||| ||| |||| ||||  |||||||||| | |||||||||| ||||||||||| |||||||||||||||||| |||| ||||| ||||||||    
T  26575703 tgaggtgaaggttgatgaatttgtaggaatcgattaagaatttaagtgattttgaagttgatcggaatcggagaagtgatattaccggtaaacgggagaa 26575802  T
Q  410 gatttcgg 417  Q
    ||||||||    
T  26575803 gatttcgg 26575810  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 230 - 382
Target Start/End: Original strand, 561917 - 562066
Alignment:
Q  230 ggtggttagggtagggaaatggagttggtagagatgggtgtcgtgacggaggatgaggttgaaattgagggatgagtttttgaggtgaagattggtgaag 329  Q
    |||||||||| |||||||||  | |||||| |  | || |||||| | |||||||||||| |||||||||||   ||||||||||||||| || ||||||    
T  561917 ggtggttaggttagggaaatcaaattggtaaaattcggagtcgtggctgaggatgaggttaaaattgaggga---gtttttgaggtgaaggttagtgaag 562013  T
Q  330 ttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggag 382  Q
    ||||| ||||||||||||||||||||  | |||||| || | |||||||||||    
T  562014 ttgtgggaatcgattatggatttaagccattttgaacttaatcggaatcggag 562066  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 561787 - 561825
Alignment:
Q  91 gatgtttacggatgttagggttccagaaagcgatttcgt 129  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  561787 gatgtttacggatgttagggttccagaaagcaatttcgt 561825  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 26575411 - 26575476
Alignment:
Q  66 ggaatagggagatgagggataatccgatgtttacggatgttagggttccagaaagcgatttcgttg 131  Q
    |||| |||||||  |||||||||||||| ||||| | ||| |||||||||||  ||||||||||||    
T  26575411 ggaagagggagaaaagggataatccgatatttaccggtgtaagggttccagattgcgatttcgttg 26575476  T

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Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 310 - 429
Target Start/End: Complemental strand, 41966047 - 41965928
Alignment:
Q  310 tgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaagcgggagaa 409  Q
    |||||||||| ||| |||||||||| |||||||||| ||||  |||||| || || ||||| ||||||||||||| ||||||||| |||||  |||||||    
T  41966047 tgaggtgaaggttgatgaagttgtgggaatcgattaaggatcgaagtgatttcgaggttgatcggaatcggagaactgattttaccggtaatagggagaa 41965948  T
Q  410 gatttcggcgagtatgtctg 429  Q
    |||||| |||||||| ||||    
T  41965947 gatttcagcgagtatttctg 41965928  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 65 - 127
Target Start/End: Complemental strand, 41966316 - 41966254
Alignment:
Q  65 aggaatagggagatgagggataatccgatgtttacggatgttagggttccagaaagcgatttc 127  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||||||||| | ||||||    
T  41966316 aggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 41966254  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 400
Target Start/End: Original strand, 45238747 - 45238843
Alignment:
Q  304 agtttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgactttgaagttgagcggaatcggagaagtgattttactggtaa 400  Q
    |||||||||| |||||  |||||||||||| |  ||||||||  ||   |||||| ||||||||||| ||||||||||| || |||| ||| |||||    
T  45238747 agtttttgagatgaagggtggtgaagttgtaactatcgattaaagaaagaagtgagtttgaagttgatcggaatcggagtagggattctaccggtaa 45238843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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