View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0119-INSERTION-5 (Length: 613)

Name: NF0119-INSERTION-5
Description: NF0119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0119-INSERTION-5
NF0119-INSERTION-5
[»] chr5 (4 HSPs)
chr5 (210-414)||(7295448-7295652)
chr5 (210-414)||(22776457-22776661)
chr5 (208-314)||(22272542-22272648)
chr5 (279-339)||(7348263-7348323)
[»] chr8 (3 HSPs)
chr8 (210-414)||(43340584-43340788)
chr8 (225-314)||(33361414-33361503)
chr8 (6-35)||(16780329-16780358)
[»] chr2 (2 HSPs)
chr2 (210-399)||(43904092-43904281)
chr2 (210-339)||(5086490-5086619)
[»] chr7 (5 HSPs)
chr7 (1-159)||(35442988-35443146)
chr7 (440-613)||(35442063-35442235)
chr7 (238-314)||(8362684-8362760)
chr7 (208-314)||(31419757-31419863)
chr7 (157-215)||(35443205-35443264)
[»] chr6 (3 HSPs)
chr6 (210-376)||(30798249-30798415)
chr6 (208-303)||(7171642-7171737)
chr6 (372-414)||(30800279-30800321)
[»] chr1 (1 HSPs)
chr1 (223-339)||(25535039-25535155)
[»] scaffold0005 (1 HSPs)
scaffold0005 (208-314)||(40259-40365)
[»] chr4 (2 HSPs)
chr4 (208-314)||(14799362-14799468)
chr4 (208-314)||(37466241-37466347)
[»] chr3 (2 HSPs)
chr3 (208-314)||(2734388-2734494)
chr3 (208-314)||(40923434-40923540)


Alignment Details
Target: chr5 (Bit Score: 173; Significance: 1e-92; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 210 - 414
Target Start/End: Original strand, 7295448 - 7295652
Alignment:
Q  210 aattctttaggacgtgatcctggaaagtgtattctaatttggcaatatccaccaaatcaaatgaatgcaatacgaagagtgtatctaaaatggggtcctt 309  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  7295448 aattctttaggatgtgatcctggaaagtgtattctaatttggcaatatccaccaaatcaaataaatgcaatacgaagagcgtatctaaaatggggtcctt 7295547  T
Q  310 atcaaatgcatttagaaaattatcccttgttcgacagcgatgtttgaggtaggaacaatattacatcaacacgcatttgagtttagtttggcgcggccat 409  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||| ||    
T  7295548 atcaaatgcatttagaaaattatcccttgttcgacagagatgtttgaggtaggaacaatattacatcaacactcatttgagtttagtttgatgcggctat 7295647  T
Q  410 cccaa 414  Q
    |||||    
T  7295648 cccaa 7295652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 210 - 414
Target Start/End: Original strand, 22776457 - 22776661
Alignment:
Q  210 aattctttaggacgtgatcctggaaagtgtattctaatttggcaatatccaccaaatcaaatgaatgcaatacgaagagtgtatctaaaatggggtcctt 309  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||| ||||||    
T  22776457 aattctttaggacgtgatcttggaaagtgtattctaatttggcaatatccaccaaatcaaacgaatgcaatacgaagagcgcatctaaaatggagtcctt 22776556  T
Q  310 atcaaatgcatttagaaaattatcccttgttcgacagcgatgtttgaggtaggaacaatattacatcaacacgcatttgagtttagtttggcgcggccat 409  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||    
T  22776557 atcaaatgcatttagaaaattatcccttgttcgacaacgatgtttgaggtaggaacaatattacatcaacactcatttgagtttagtttgatgcggccat 22776656  T
Q  410 cccaa 414  Q
    |||||    
T  22776657 cccaa 22776661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 208 - 314
Target Start/End: Complemental strand, 22272648 - 22272542
Alignment:
Q  208 aaaattctttaggacgtgatcctggaaagtgtattctaatttggcaatatccaccaaatcaaatgaatgcaatacgaagagtgtatctaaaatggggtcc 307  Q
    |||||||||||| | | ||||| |||||  |||||| |||||  ||||||||||||||||||| | |||||||||||||||  |||||||||||||||||    
T  22272648 aaaattctttagaaagggatccaggaaaacgtattccaatttaccaatatccaccaaatcaaaaggatgcaatacgaagagcctatctaaaatggggtcc 22272549  T
Q  308 ttatcaa 314  Q
    |||||||    
T  22272548 ttatcaa 22272542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 7348263 - 7348323
Alignment:
Q  279 atacgaagagtgtatctaaaatggggtccttatcaaatgcatttagaaaattatcccttgt 339  Q
    |||||||| ||||||||||||| ||||| |||||||||||| |||||||| |||| |||||    
T  7348263 atacgaagtgtgtatctaaaatagggtcgttatcaaatgcaattagaaaactatcacttgt 7348323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 210 - 414
Target Start/End: Complemental strand, 43340788 - 43340584
Alignment:
Q  210 aattctttaggacgtgatcctggaaagtgtattctaatttggcaatatccaccaaatcaaatgaatgcaatacgaagagtgtatctaaaatggggtcctt 309  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  43340788 aattctttaggatgtgatcctggaaagtgtattctaatttggtaatatccaccaaatcaaataaatgcaatacgaagagcgtatctaaaatggggtcctt 43340689  T
Q  310 atcaaatgcatttagaaaattatcccttgttcgacagcgatgtttgaggtaggaacaatattacatcaacacgcatttgagtttagtttggcgcggccat 409  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||   |||||||    
T  43340688 atcaaatgcatttagaaaattatcccttgttcgacagagatgtttgaggtaggaacaatattacatcaacactcatttgagtttagtttgattcggccat 43340589  T
Q  410 cccaa 414  Q
    |||||    
T  43340588 cccaa 43340584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 225 - 314
Target Start/End: Original strand, 33361414 - 33361503
Alignment:
Q  225 gatcctggaaagtgtattctaatttggcaatatccaccaaatcaaatgaatgcaatacgaagagtgtatctaaaatggggtccttatcaa 314  Q
    ||||| |||||  |||||| ||||||| ||||||||||||| |||||| |||||||||||||||  ||||||||||||||||||||||||    
T  33361414 gatccaggaaaacgtattccaatttggaaatatccaccaaaacaaatggatgcaatacgaagagcctatctaaaatggggtccttatcaa 33361503  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 16780358 - 16780329
Alignment:
Q  6 accacttattttacataaatatatgtattt 35  Q
    ||||||||||||||||||||||||||||||    
T  16780358 accacttattttacataaatatatgtattt 16780329  T

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Target: chr2 (Bit Score: 166; Significance: 2e-88; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 210 - 399
Target Start/End: Complemental strand, 43904281 - 43904092
Alignment:
Q  210 aattctttaggacgtgatcctggaaagtgtattctaatttggcaatatccaccaaatcaaatgaatgcaatacgaagagtgtatctaaaatggggtcctt 309  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  43904281 aattctttaggacgtgatcctagaaagtgtattctaatttggcaatatccaccaaatcaaatgaatgcaatacgaagagcgtatctaaaatggagtcctt 43904182  T
Q  310 atcaaatgcatttagaaaattatcccttgttcgacagcgatgtttgaggtaggaacaatattacatcaacacgcatttgagtttagtttg 399  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  43904181 atcaaatgcatttagaaaattatcccttattcgacagcgatgtttgaggtaggaacaatattacatcaacacgcgtttaagtttagtttg 43904092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 210 - 339
Target Start/End: Original strand, 5086490 - 5086619
Alignment:
Q  210 aattctttaggacgtgatcctggaaagtgtattctaatttggcaatatccaccaaatcaaatgaatgcaatacgaagagtgtatctaaaatggggtcctt 309  Q
    |||||||||| ||||||||||| |||| |||||| |||||||||||||||||| ||||||| | ||||||||||||||| ||||||||||||||||||||    
T  5086490 aattctttagaacgtgatcctgaaaagcgtattccaatttggcaatatccaccgaatcaaaaggatgcaatacgaagagcgtatctaaaatggggtcctt 5086589  T
Q  310 atcaaatgcatttagaaaattatcccttgt 339  Q
    |||||| | | |||||||| ||||||||||    
T  5086590 atcaaacgaaattagaaaactatcccttgt 5086619  T

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Target: chr7 (Bit Score: 155; Significance: 6e-82; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 35442988 - 35443146
Alignment:
Q  1 atttaaccacttattttacataaatatatgtatttttagcattttgtaaccaaacaaaccctatctactatttactaatcaaaaaataaaacctcattct 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35442988 atttaaccacttattttaaataaatatatgtatttttagcattttgtaaccaaacaaaccctatctactatttactaatcaaaaaataaaacctcattct 35443087  T
Q  101 atacaaaatttccaactgcataaaaccacgagaagaaatgcaatctatacaaatataca 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35443088 atacaaaatttccaactgcataaaaccacgagaagaaatgcaatctatacaaatataca 35443146  T

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Target: chr7; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 440 - 613
Target Start/End: Original strand, 35442063 - 35442235
Alignment:
Q  440 agttgattcatattgaatgttcgtgaaaaattaattattattactaacnnnnnnngccactttgaggagcatgcatttacaattttgaacattcataaac 539  Q
    |||||||| |||||||||||||||| ||||||||||| ||||||||||       ||||| |||||||| ||||||||||||||||||||||||||||||    
T  35442063 agttgatttatattgaatgttcgtgtaaaattaattaatattactaacaaaaaaagccac-ttgaggaggatgcatttacaattttgaacattcataaac 35442161  T
Q  540 tgtaatgacgacatttcatatatttaaggatcaaaatgaatgtttatcaaaacaaagttacctattttagtaaa 613  Q
    | |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35442162 tataatgacggcatttcacatatttaaggatcaaaatgaatgtttatcaaaacaaagttacctattttagtaaa 35442235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 238 - 314
Target Start/End: Original strand, 8362684 - 8362760
Alignment:
Q  238 gtattctaatttggcaatatccaccaaatcaaatgaatgcaatacgaagagtgtatctaaaatggggtccttatcaa 314  Q
    |||||| |||||||||||||||||||||||||| | ||||||||||||||| ||||| |||||||||||||||||||    
T  8362684 gtattccaatttggcaatatccaccaaatcaaaaggatgcaatacgaagagcgtatcaaaaatggggtccttatcaa 8362760  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 208 - 314
Target Start/End: Original strand, 31419757 - 31419863
Alignment:
Q  208 aaaattctttaggacgtgatcctggaaagtgtattctaatttggcaatatccaccaaatcaaatgaatgcaatacgaagagtgtatctaaaatggggtcc 307  Q
    |||||||||||| | | ||||| | |||  |||||| |||||  ||||||||||||||||||| | |||||||||||||||  |||||||||||||||||    
T  31419757 aaaattctttagaaagggatccagaaaaacgtattccaatttaccaatatccaccaaatcaaaaggatgcaatacgaagagcctatctaaaatggggtcc 31419856  T
Q  308 ttatcaa 314  Q
    |||||||    
T  31419857 ttatcaa 31419863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 35443205 - 35443264
Alignment:
Q  157 acaaacataaaaaa-ggtgaagaacaaaggtgattcctttgtttattttcgcaaaattct 215  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  35443205 acaaacataaaaaaaggtaaagaacaaaggtgattcctttgtttattttcgcaaaattct 35443264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 8e-75; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 210 - 376
Target Start/End: Original strand, 30798249 - 30798415
Alignment:
Q  210 aattctttaggacgtgatcctggaaagtgtattctaatttggcaatatccaccaaatcaaatgaatgcaatacgaagagtgtatctaaaatggggtcctt 309  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||    
T  30798249 aattctttaggatgtgatcctggaaagtgtattctaatttggcaatatccaccaaatcaaataaatgcaataagaagagcgtatctaaaatggggtcctt 30798348  T
Q  310 atcaaatgcatttagaaaattatcccttgttcgacagcgatgtttgaggtaggaacaatattacatc 376  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30798349 atcaaatgcatttaaaaaattatcccttgttcgacagagatgtttgaggtaggaacaatattacatc 30798415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 208 - 303
Target Start/End: Original strand, 7171642 - 7171737
Alignment:
Q  208 aaaattctttaggacgtgatcctggaaagtgtattctaatttggcaatatccaccaaatcaaatgaatgcaatacgaagagtgtatctaaaatggg 303  Q
    |||||||||||| | |  |||| ||||| ||||||| |||||  ||||||||||||||||||| | |||||||||||||||  |||||||||||||    
T  7171642 aaaattctttagaaaggtatccaggaaaatgtattccaatttaccaatatccaccaaatcaaaaggatgcaatacgaagagcctatctaaaatggg 7171737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 372 - 414
Target Start/End: Original strand, 30800279 - 30800321
Alignment:
Q  372 acatcaacacgcatttgagtttagtttggcgcggccatcccaa 414  Q
    |||||||||| |||||||||||||||||  |||||||||||||    
T  30800279 acatcaacactcatttgagtttagtttgatgcggccatcccaa 30800321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 223 - 339
Target Start/End: Original strand, 25535039 - 25535155
Alignment:
Q  223 gtgatcctggaaagtgtattctaatttggcaatatccaccaaatcaaatgaatgcaatacgaagagtgtatctaaaatggggtccttatcaaatgcattt 322  Q
    |||||| ||||||| |||||| |||||| ||||||||||| ||||||| | |||||| ||||||||||| ||||||||||||||||||||||||| | ||    
T  25535039 gtgatcttggaaagcgtattccaatttgtcaatatccaccgaatcaaaaggatgcaaaacgaagagtgtgtctaaaatggggtccttatcaaatgaaatt 25535138  T
Q  323 agaaaattatcccttgt 339  Q
    ||| ||  |||||||||    
T  25535139 agagaacaatcccttgt 25535155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 208 - 314
Target Start/End: Original strand, 40259 - 40365
Alignment:
Q  208 aaaattctttaggacgtgatcctggaaagtgtattctaatttggcaatatccaccaaatcaaatgaatgcaatacgaagagtgtatctaaaatggggtcc 307  Q
    |||||||||||| | | ||||| |||||  |||||| |||||| ||||||||||||||||||| | |||||||||||||||  |||||||||||||||||    
T  40259 aaaattctttagaaagggatccaggaaaacgtattccaatttgccaatatccaccaaatcaaaaggatgcaatacgaagagcctatctaaaatggggtcc 40358  T
Q  308 ttatcaa 314  Q
    |||||||    
T  40359 ttatcaa 40365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 208 - 314
Target Start/End: Complemental strand, 14799468 - 14799362
Alignment:
Q  208 aaaattctttaggacgtgatcctggaaagtgtattctaatttggcaatatccaccaaatcaaatgaatgcaatacgaagagtgtatctaaaatggggtcc 307  Q
    |||||||||||| | | ||||| |||||  |||||| |||||| ||||||||||||||||||| | |||||||||||||||  |||||||||||||||||    
T  14799468 aaaattctttagaaagggatccaggaaaacgtattccaatttgccaatatccaccaaatcaaaaggatgcaatacgaagagcctatctaaaatggggtcc 14799369  T
Q  308 ttatcaa 314  Q
    |||||||    
T  14799368 ttatcaa 14799362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 208 - 314
Target Start/End: Complemental strand, 37466347 - 37466241
Alignment:
Q  208 aaaattctttaggacgtgatcctggaaagtgtattctaatttggcaatatccaccaaatcaaatgaatgcaatacgaagagtgtatctaaaatggggtcc 307  Q
    |||||||||||| | | ||||| |||||  |||||  ||||||||||||||||||||||||||   || ||||||||||||| ||||||||||| |||||    
T  37466347 aaaattctttagaaagggatccaggaaaacgtattgcaatttggcaatatccaccaaatcaaaatgatacaatacgaagagtctatctaaaatgaggtcc 37466248  T
Q  308 ttatcaa 314  Q
    |||||||    
T  37466247 ttatcaa 37466241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 208 - 314
Target Start/End: Original strand, 2734388 - 2734494
Alignment:
Q  208 aaaattctttaggacgtgatcctggaaagtgtattctaatttggcaatatccaccaaatcaaatgaatgcaatacgaagagtgtatctaaaatggggtcc 307  Q
    |||||||||||| | | ||||| ||||| ||||||| |||||  ||||||||||||||||||| | |||||||||||||||  |||||||||||||||||    
T  2734388 aaaattctttagaaagggatccaggaaaatgtattccaatttaccaatatccaccaaatcaaaaggatgcaatacgaagagcctatctaaaatggggtcc 2734487  T
Q  308 ttatcaa 314  Q
    |||||||    
T  2734488 ttatcaa 2734494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 208 - 314
Target Start/End: Original strand, 40923434 - 40923540
Alignment:
Q  208 aaaattctttaggacgtgatcctggaaagtgtattctaatttggcaatatccaccaaatcaaatgaatgcaatacgaagagtgtatctaaaatggggtcc 307  Q
    |||||||||||| | | ||||| |||||  |||||| |||||  ||||||||||||||||||| | |||||||||||||||  |||||||||||||||||    
T  40923434 aaaattctttagaaagggatccaggaaaacgtattccaatttaccaatatccaccaaatcaaaaggatgcaatacgaagagcctatctaaaatggggtcc 40923533  T
Q  308 ttatcaa 314  Q
    |||||||    
T  40923534 ttatcaa 40923540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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