View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0119-INSERTION-8 (Length: 1222)

Name: NF0119-INSERTION-8
Description: NF0119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0119-INSERTION-8
NF0119-INSERTION-8
[»] chr4 (9 HSPs)
chr4 (122-608)||(2664297-2664781)
chr4 (749-1026)||(2663894-2664172)
chr4 (6-128)||(2663574-2663696)
chr4 (1129-1222)||(2663690-2663783)
chr4 (255-424)||(3281838-3282007)
chr4 (122-194)||(52648215-52648287)
chr4 (129-192)||(42883532-42883595)
chr4 (144-194)||(32103164-32103214)
chr4 (15-116)||(52952056-52952157)
[»] chr8 (2 HSPs)
chr8 (255-424)||(9468918-9469088)
chr8 (127-194)||(12868234-12868302)
[»] scaffold0129 (1 HSPs)
scaffold0129 (122-193)||(7461-7532)
[»] chr5 (7 HSPs)
chr5 (263-487)||(17347669-17347894)
chr5 (127-194)||(14009717-14009785)
chr5 (129-185)||(28313532-28313588)
chr5 (122-188)||(23120911-23120978)
chr5 (139-194)||(19321199-19321254)
chr5 (139-192)||(12036706-12036759)
chr5 (166-197)||(32379332-32379363)
[»] chr3 (4 HSPs)
chr3 (122-193)||(39703210-39703281)
chr3 (127-194)||(22509508-22509576)
chr3 (262-424)||(36275693-36275856)
chr3 (128-194)||(39622167-39622233)
[»] chr7 (5 HSPs)
chr7 (122-192)||(42452998-42453068)
chr7 (128-193)||(33532236-33532301)
chr7 (133-189)||(21525595-21525651)
chr7 (127-194)||(41596867-41596935)
chr7 (127-186)||(17174749-17174808)
[»] chr2 (3 HSPs)
chr2 (122-191)||(37551694-37551763)
chr2 (127-194)||(43525473-43525541)
chr2 (131-188)||(12054956-12055013)
[»] scaffold0711 (1 HSPs)
scaffold0711 (127-197)||(116-187)
[»] chr6 (4 HSPs)
chr6 (134-194)||(20431543-20431603)
chr6 (128-194)||(15667014-15667079)
chr6 (127-194)||(17912140-17912207)
chr6 (139-192)||(15717912-15717964)
[»] chr1 (4 HSPs)
chr1 (139-194)||(42677972-42678027)
chr1 (129-200)||(20256278-20256349)
chr1 (139-193)||(41946169-41946223)
chr1 (128-173)||(44316042-44316087)


Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 122 - 608
Target Start/End: Complemental strand, 2664781 - 2664297
Alignment:
Q  122 acaattgaaaaatttatgtttatatattagagtatattttggtggcccaccctcgatattttttctagctccgtcattgtctgcagctcctttggaagaa 221  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||    
T  2664781 acaactgaaaaatttatgtttatatattagagtatattttgctggcccaccctcgatattttttctagctccgccgttgtctgcagctcctttggaggaa 2664682  T
Q  222 cctctnnnnnnntgggcacaaaagaatcttgtgtatgcaactaaccaattcgcacttctgttttcttcaagtaaggtgaggtttatctgaaccttcccaa 321  Q
    |||||       |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2664681 cctctaaaacaatgggcacaaaagaatcttgtatatgcaactaaccaattcgcacttctgttttcttcaagtaaggtgaggttgatctgaaccttcccaa 2664582  T
Q  322 aaaattcaatgagatctcggattcgacaaatcaaaatgggaatagcccattaatcttgcaatttccggttaccatgtccactaatagtttggagtcgctt 421  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  2664581 aaaattcaatgagatctcggattcgacaaatcaaaatgggaatagcccattaatcttgcaattttcgattaccatgtccactaatagtttggagtcgctt 2664482  T
Q  422 t-ccccatgagttgcnnnnnnnccttttcttctggctattcttaagcaatcatacatgccccacatcgatatgttcatcttaattacatttattagaccg 520  Q
    | |||||||||||||       |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2664481 tcccccatgagttgc-aaaaatccttgtcttctggctattcttaagccatcatacatgccccacatcgatatgttcatcttaattacatttatgagaccg 2664383  T
Q  521 cataacatctcatcttataaaatacaatttacagttatatatgataagtgtttatgctcctctcagacacacatacatagaaacactt 608  Q
    |||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  2664382 cataacatcttatcttataaaatacaatttacagt--tatatgataagtgtttatgctcctctcaaacacacatatatagaaacactt 2664297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 163; E-Value: 2e-86
Query Start/End: Original strand, 749 - 1026
Target Start/End: Complemental strand, 2664172 - 2663894
Alignment:
Q  749 ctagtcacacccctaaaaatctgactacaccacaaaattactaaaatactgttaaattaaaataaatgctttattgtattattcaataaattaagtctat 848  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| ||||| |||    
T  2664172 ctagtcacacccctaaaa-tctgattacaccacaaaattactaaaatacttttaaagtaaaataaatggtttattgtattattcaataaactaagtttat 2664074  T
Q  849 gcaaacaaagtttacgatagtttatgtaaacgcacgtaaactcaaattatatacactaccctaatctaagtttacacacactatatcatatacaattcaa 948  Q
    ||||||  |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||    
T  2664073 gcaaactgagtttacgatagtttatgtaaaagtacgtaaactcaaattatatacactaccctaatctaagtttacaaacactatatcatatacaacttaa 2663974  T
Q  949 ttcacgtgaatct---nnnnnnnntattattcacatataaattctctaccgaagaaaaaagatgagtccttgtaaactgag 1026  Q
    ||||| |||||||            ||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  2663973 ttcacatgaatctgaagaaaaaagaattattcacatatgaa-tctctaccgaagaaaaaagatgagtccttgtaaactgag 2663894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 6 - 128
Target Start/End: Complemental strand, 2663696 - 2663574
Alignment:
Q  6 caaaagaaattttaaaaaatcagatgcacaagagcaattttaatattattaataaatttcaatgaaatttgggtgtaacaaaaatatttcggggtgcaag 105  Q
    ||||||||||||||| |||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  2663696 caaaagaaattttaagaaattagatgcacaagagcagttttagtattattaataaatttcaatgaaatttgggtgtaacaaaaatatttcgcggtggaag 2663597  T
Q  106 tagaaaaaatcctttaacaattg 128  Q
    |||||||||||||||||||||||    
T  2663596 tagaaaaaatcctttaacaattg 2663574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 1129 - 1222
Target Start/End: Complemental strand, 2663783 - 2663690
Alignment:
Q  1129 catcattgaagaagcagaatttcattgaaattgatcacacttctatgaatatttgcgagagcagatgaaaatttagagtaggagatgcaaaaga 1222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  2663783 catcattgaagaagcagaatttcattgaaattgatcacacttctatgaatatttgcgagagcagatgaagatttagagtgggagatgcaaaaga 2663690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 255 - 424
Target Start/End: Complemental strand, 3282007 - 3281838
Alignment:
Q  255 tatgcaactaaccaattcgcacttctgttttcttcaagtaaggtgaggtttatctgaaccttcccaaaaaattcaatgagatctcggattcgacaaatca 354  Q
    |||||| ||||||||| ||||||||||||| ||||| |||||||| ||||||||| ||||| |||| ||| ||||||||||| ||||||||||| |||||    
T  3282007 tatgcagctaaccaatccgcacttctgtttccttcacgtaaggtgtggtttatctaaacctccccagaaagttcaatgagatatcggattcgacgaatca 3281908  T
Q  355 aa--atgggaatag-cccattaatcttgcaatttccggttaccatgtccactaatagtttggagtcgctttcc 424  Q
    ||  ||||   ||| ||||||||||||||||||||  ||||||||||||| ||  |||||| ||| |||||||    
T  3281907 aaacatgg---tagccccattaatcttgcaatttcacgttaccatgtccagtagcagtttgaagttgctttcc 3281838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 52648287 - 52648215
Alignment:
Q  122 acaattgaaaaatttatgtttatatattagagtatattttggtggcccaccctcgatattttttctagctccg 194  Q
    |||| |||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||    
T  52648287 acaactgaaaaatttatgtttatatattagagtatattttgctagcccatcctcgatattttttctagctccg 52648215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 42883595 - 42883532
Alignment:
Q  129 aaaaatttatgtttatatattagagtatattttggtggcccaccctcgatattttttctagctc 192  Q
    |||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42883595 aaaagtttatgttcatatattagagtatattttgttggcccaccctcgatattttttctagctc 42883532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 32103214 - 32103164
Alignment:
Q  144 tatattagagtatattttggtggcccaccctcgatattttttctagctccg 194  Q
    ||||||||||||||||||| |||||||||| ||| ||||||||||||||||    
T  32103214 tatattagagtatattttgctggcccacccccgacattttttctagctccg 32103164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 52952157 - 52952056
Alignment:
Q  15 ttttaaaaaatcagatgcacaagagcaattttaatattattaataaatttcaatgaaatttgggtgtaacaaaaatatttcggggtgcaagtagaaaaaa 114  Q
    |||| |||||| ||||||| ||| |||||||| ||||| | || |||||  |||||||||||| |||||| |  |  |||| ||||| ||||||||||||    
T  52952157 ttttgaaaaattagatgcaaaagggcaattttgatattctcaacaaattctaatgaaatttggatgtaacgagtaattttcagggtggaagtagaaaaaa 52952058  T
Q  115 tc 116  Q
    ||    
T  52952057 tc 52952056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 6e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 255 - 424
Target Start/End: Complemental strand, 9469088 - 9468918
Alignment:
Q  255 tatgcaactaaccaattcgcacttctgttttcttcaagtaaggtgaggtttatctgaaccttcccaaaaaattcaatgagatctcggattcgacaaatca 354  Q
    |||||| ||||||||   ||||||||||||| |||| | |||||| ||||||||||||||| ||||  || |||||||||||||||||||||||  ||||    
T  9469088 tatgcagctaaccaaactgcacttctgttttattcacgcaaggtgtggtttatctgaacctccccaggaagttcaatgagatctcggattcgacggatca 9468989  T
Q  355 aaatgggaatag-cccattaatcttgcaatttccggttaccatgtccactaatagtttggagtcgctttcc 424  Q
     || ||| |||| ||||||||||||||||||||  ||||||||||||||||  |||||||| |||||||||    
T  9468988 gaacggggatagccccattaatcttgcaatttcatgttaccatgtccactagcagtttggaatcgctttcc 9468918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 12868302 - 12868234
Alignment:
Q  127 tgaaaaatttatgttt-atatattagagtatattttggtggcccaccctcgatattttttctagctccg 194  Q
    |||||||||||| ||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  12868302 tgaaaaatttatattttatatattagagtatattttgttggcccacccccgatattttttctagctccg 12868234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 60; Significance: 6e-25; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 7532 - 7461
Alignment:
Q  122 acaattgaaaaatttatgtttatatattagagtatattttggtggcccaccctcgatattttttctagctcc 193  Q
    |||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  7532 acaactgaaaaatttatgtttatatattatagtatattttgctggcccaccctcgatattttttctagctcc 7461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 3e-23; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 263 - 487
Target Start/End: Complemental strand, 17347894 - 17347669
Alignment:
Q  263 taaccaattcgcacttctgttttcttcaagtaaggtgaggtttatctgaaccttcccaaaaaattcaatgagatctcggattcgacaaatcaaaatggga 362  Q
    |||||||||  ||||| ||||| ||||| | |||||| ||||||| ||||||| || |  || |||||| ||||||||||||| || |||||| |||||     
T  17347894 taaccaattttcacttttgtttccttcatgcaaggtgtggtttatttgaacctccctaggaagttcaatcagatctcggattcaacgaatcaacatgggg 17347795  T
Q  363 atag-cccattaatcttgcaatttccggttaccatgtccactaatagtttggagtcgctttcc-ccatgagttgcnnnnnnnccttttcttctggctatt 460  Q
    |||| ||||||||||||| |||||   ||||| ||||||||||  |||||||||||||||||| | |||||||||       |||| ||||  ||||||     
T  17347794 atagccccattaatcttgaaattttatgttacaatgtccactagcagtttggagtcgctttccacaatgagttgc-gaaaaaccttatctttcggctatc 17347696  T
Q  461 cttaagcaatcatacatgccccacatc 487  Q
    |||||||  ||||||||||||||||||    
T  17347695 cttaagccctcatacatgccccacatc 17347669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 14009717 - 14009785
Alignment:
Q  127 tgaaaaatttatgttt-atatattagagtatattttggtggcccaccctcgatattttttctagctccg 194  Q
    |||||||||||| ||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  14009717 tgaaaaatttatattttatatattagagtatattttgttggcccacccccgatattttttctagctccg 14009785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 28313532 - 28313588
Alignment:
Q  129 aaaaatttatgtttatatattagagtatattttggtggcccaccctcgatatttttt 185  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  28313532 aaaaatttatgtttatatattagagtatattttgctggcccacccccgatatttttt 28313588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 23120978 - 23120911
Alignment:
Q  122 acaattgaaaaatttatgttt-atatattagagtatattttggtggcccaccctcgatattttttcta 188  Q
    |||| |||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||    
T  23120978 acaactgaaaaatttatgttttatatattagagtatattttgctggcccacccccgatattttttcta 23120911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 19321199 - 19321254
Alignment:
Q  139 gtttatatattagagtatattttggtggcccaccctcgatattttttctagctccg 194  Q
    |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||    
T  19321199 gtttatatattatagtataatttgctggcccaccctcgatattttttctagctccg 19321254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 12036706 - 12036759
Alignment:
Q  139 gtttatatattagagtatattttggtggcccaccctcgatattttttctagctc 192  Q
    ||||||||||||||||||| |||| ||| |||||||||||||||||||||||||    
T  12036706 gtttatatattagagtataatttgctggtccaccctcgatattttttctagctc 12036759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 197
Target Start/End: Complemental strand, 32379363 - 32379332
Alignment:
Q  166 gcccaccctcgatattttttctagctccgtca 197  Q
    ||||||||||||||||||||||||||||||||    
T  32379363 gcccaccctcgatattttttctagctccgtca 32379332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 1e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 122 - 193
Target Start/End: Original strand, 39703210 - 39703281
Alignment:
Q  122 acaattgaaaaatttatgtttatatattagagtatattttggtggcccaccctcgatattttttctagctcc 193  Q
    |||| |||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  39703210 acaactgaaaagtttatgtttatatattagagtatattttgttagcccaccctcgatattttttctagctcc 39703281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 22509576 - 22509508
Alignment:
Q  127 tgaaaaatttatgttt-atatattagagtatattttggtggcccaccctcgatattttttctagctccg 194  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  22509576 tgaaaaatttatgttttatatattagagtatattttgctggcccacccccgatattttttctagctccg 22509508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 262 - 424
Target Start/End: Complemental strand, 36275856 - 36275693
Alignment:
Q  262 ctaaccaattcgcacttctgttttcttcaagtaaggtgaggtttatctgaaccttcccaaaaaattcaatgagatctcggattcgacaaatcaaaatggg 361  Q
    ||||||||| ||||| ||||||| ||||| | || ||| |||||||||| |||  ||||| ||||||||| |||||||| |||| || ||| | || |||    
T  36275856 ctaaccaatccgcacatctgtttccttcacgaaatgtgtggtttatctgcaccaccccaagaaattcaataagatctcgtattcaacgaataagaacggg 36275757  T
Q  362 aatagccc-attaatcttgcaatttccggttaccatgtccactaatagtttggagtcgctttcc 424  Q
      |||||| ||||||||| ||||| || ||||||||||||||||  ||||||||||| ||||||    
T  36275756 ggtagccccattaatcttacaattacctgttaccatgtccactagaagtttggagtcactttcc 36275693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 39622167 - 39622233
Alignment:
Q  128 gaaaaatttatgtttatatattagagtatattttggtggcccaccctcgatattttttctagctccg 194  Q
    |||||| ||||| |||||||||||||||||||||| | |||||||  ||||||||||||||||||||    
T  39622167 gaaaaaattatgcttatatattagagtatattttgcttgcccacctccgatattttttctagctccg 39622233  T

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Target: chr7 (Bit Score: 51; Significance: 1e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 122 - 192
Target Start/End: Original strand, 42452998 - 42453068
Alignment:
Q  122 acaattgaaaaatttatgtttatatattagagtatattttggtggcccaccctcgatattttttctagctc 192  Q
    |||| |||| || ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  42452998 acaactgaataaattatgtttacatattagagtatattttgttggcccaccctcgatattttttctagctc 42453068  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 33532236 - 33532301
Alignment:
Q  128 gaaaaatttatgtttatatattagagtatattttggtggcccaccctcgatattttttctagctcc 193  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||   |||||||||||||||||    
T  33532236 gaaaaatttatgtttatatattagagtatgttttgttggcccaccccaaatattttttctagctcc 33532301  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 21525651 - 21525595
Alignment:
Q  133 atttatgtttatatattagagtatattttggtggcccaccctcgatattttttctag 189  Q
    |||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  21525651 atttttgtttatatattagagtatattttgctggcacaccctcgatattttttctag 21525595  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 41596867 - 41596935
Alignment:
Q  127 tgaaaaatttatgttt-atatattagagtatattttggtggcccaccctcgatattttttctagctccg 194  Q
    |||||||||||| ||| |||||||||||||||||||| |||||||||| |||||||||||||| |||||    
T  41596867 tgaaaaatttatattttatatattagagtatattttgttggcccacccccgatattttttctaactccg 41596935  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 17174808 - 17174749
Alignment:
Q  127 tgaaaaatttatgtttatatattagagtatattttggtggcccaccctcgatattttttc 186  Q
    |||||| |||||||||||||||||| |||||||||  |||||||||||| ||||||||||    
T  17174808 tgaaaagtttatgtttatatattagggtatattttactggcccaccctcaatattttttc 17174749  T

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Target: chr2 (Bit Score: 50; Significance: 5e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 37551763 - 37551694
Alignment:
Q  122 acaattgaaaaatttatgtttatatattagagtatattttggtggcccaccctcgatattttttctagct 191  Q
    |||| |||||||||||||||||||||||||||||||||||| ||| ||| |||||| |||||||||||||    
T  37551763 acaactgaaaaatttatgtttatatattagagtatattttgttggtccatcctcgacattttttctagct 37551694  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 43525473 - 43525541
Alignment:
Q  127 tgaaaaatttatgttt-atatattagagtatattttggtggcccaccctcgatattttttctagctccg 194  Q
    |||||||||||| ||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  43525473 tgaaaaatttatattttatatattagagtatattttgttggcccacccccgatattttttctagctccg 43525541  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 12055013 - 12054956
Alignment:
Q  131 aaatttatgtttatatattagagtatattttggtggcccaccctcgatattttttcta 188  Q
    ||||||||||||||||||  |||||||||||| ||||||||||  |||||||||||||    
T  12055013 aaatttatgtttatatatccgagtatattttgctggcccacccgagatattttttcta 12054956  T

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Target: scaffold0711 (Bit Score: 48; Significance: 8e-18; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 116 - 187
Alignment:
Q  127 tgaaaaatttatgttt-atatattagagtatattttggtggcccaccctcgatattttttctagctccgtca 197  Q
    |||||||||||| ||| |||||||||||||||||||| ||||||| || |||||||||||||||||||||||    
T  116 tgaaaaatttatattttatatattagagtatattttgttggcccaaccccgatattttttctagctccgtca 187  T

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Target: chr6 (Bit Score: 45; Significance: 5e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 20431603 - 20431543
Alignment:
Q  134 tttatgtttatatattagagtatattttggtggcccaccctcgatattttttctagctccg 194  Q
    ||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||||||||    
T  20431603 tttatgtttatatattagagtatattttgctggtccacccacgatattttttatagctccg 20431543  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 15667079 - 15667014
Alignment:
Q  128 gaaaaatttatgtttatatattagagtatattttggtggcccaccctcgatattttttctagctccg 194  Q
    ||||||| ||||||||||||||||||||||||||| ||| |||||| | ||||||||||||||||||    
T  15667079 gaaaaatgtatgtttatatattagagtatattttgctggtccaccc-ctatattttttctagctccg 15667014  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 17912207 - 17912140
Alignment:
Q  127 tgaaaaatttatgtttatatattagagtatattttggtggcccaccctcgatattttttctagctccg 194  Q
    |||||| ||||| ||||||||||| | ||||||||  ||||||||||||||||||||||| |||||||    
T  17912207 tgaaaagtttatatttatatattacaatatattttactggcccaccctcgatattttttccagctccg 17912140  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 15717912 - 15717964
Alignment:
Q  139 gtttatatattagagtatattttggtggcccaccctcgatattttttctagctc 192  Q
    |||||||| ||| |||||| |||| |||||||||||||||||||||||| ||||    
T  15717912 gtttatat-ttaaagtataatttgctggcccaccctcgatattttttcttgctc 15717964  T

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Target: chr1 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 42677972 - 42678027
Alignment:
Q  139 gtttatatattagagtatattttggtggcccaccctcgatattttttctagctccg 194  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||    
T  42677972 gtttatatattagagtataatttgctagcccaccctcgatattttttctagctccg 42678027  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 20256349 - 20256278
Alignment:
Q  129 aaaaatttatgtttatatattagagtatattttggtggcccaccctcgatattttttctagctccgtcattg 200  Q
    |||||||||||||||||||||||||| ||||||  |||| |||||   |||||||| ||||||||| |||||    
T  20256349 aaaaatttatgtttatatattagagtttattttactggcacacccaaaatatttttcctagctccgccattg 20256278  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 41946169 - 41946223
Alignment:
Q  139 gtttatatattagagtatattttggtggcccaccctcgatattttttctagctcc 193  Q
    |||||||||||||||||||  ||| | ||||||||| ||||||||||||||||||    
T  41946169 gtttatatattagagtataaattgctagcccacccttgatattttttctagctcc 41946223  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 44316087 - 44316042
Alignment:
Q  128 gaaaaatttatgtttatatattagagtatattttggtggcccaccc 173  Q
    ||||| |||||||||||||||||||||||||||||  |||||||||    
T  44316087 gaaaagtttatgtttatatattagagtatattttgtaggcccaccc 44316042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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